Wall clock time and date at job start Wed Apr 1 2020 04:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.44900 * 2 1 4 4 C 1.53044 * 109.45605 * 240.03192 * 2 1 3 5 5 C 1.53196 * 109.30810 * 178.61485 * 4 2 1 6 6 N 1.46921 * 108.77580 * 54.63940 * 5 4 2 7 7 C 1.36938 * 120.63311 * 126.37026 * 6 5 4 8 8 H 1.07997 * 120.00111 * 207.68195 * 7 6 5 9 9 C 1.38811 * 119.99833 * 27.68388 * 7 6 5 10 10 N 1.31622 * 119.99967 * 17.36569 * 9 7 6 11 11 Si 1.86800 * 120.00071 * 197.35911 * 9 7 6 12 12 H 1.48501 * 109.46709 * 60.00545 * 11 9 7 13 13 H 1.48497 * 109.47232 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47317 * 300.00363 * 11 9 7 15 15 C 1.46925 * 118.73797 * 306.38481 * 6 5 4 16 16 C 1.53037 * 109.45805 * 119.96726 * 2 1 3 17 17 H 1.08998 * 109.52645 * 61.41876 * 16 2 1 18 18 N 1.46496 * 109.49977 * 301.33559 * 16 2 1 19 19 C 1.34777 * 120.00099 * 155.16575 * 18 16 2 20 20 O 1.21278 * 120.00251 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99767 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.47306 * 179.97438 * 21 19 18 23 23 C 1.34849 * 125.96222 * 124.99426 * 22 21 19 24 24 N 1.36317 * 106.68746 * 179.97438 * 23 22 21 25 25 C 1.35426 * 107.39973 * 0.05368 * 24 23 22 26 26 N 1.30094 * 108.62575 * 359.65831 * 25 24 23 27 27 C 1.51035 * 123.98219 * 179.88003 * 25 24 23 28 28 C 1.53398 * 108.20911 * 344.04325 * 27 25 24 29 29 C 1.53148 * 109.24035 * 48.83241 * 28 27 25 30 30 C 1.46472 * 127.77515 * 180.02562 * 24 23 22 31 31 H 1.09003 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47360 * 299.96153 * 1 2 3 33 33 H 1.09000 * 109.47423 * 59.97161 * 1 2 3 34 34 H 1.09000 * 109.49995 * 58.66715 * 4 2 1 35 35 H 1.08996 * 109.50406 * 298.56614 * 4 2 1 36 36 H 1.09002 * 109.58271 * 174.42487 * 5 4 2 37 37 H 1.09006 * 109.58458 * 294.70550 * 5 4 2 38 38 H 0.96998 * 119.99685 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.59031 * 173.39948 * 15 6 5 40 40 H 1.09003 * 109.59243 * 293.68444 * 15 6 5 41 41 H 0.97000 * 119.99961 * 335.16479 * 18 16 2 42 42 H 1.09000 * 109.47298 * 299.99944 * 21 19 18 43 43 H 1.09001 * 109.47325 * 60.00280 * 21 19 18 44 44 H 1.08005 * 126.66101 * 359.97438 * 23 22 21 45 45 H 1.09004 * 109.71546 * 224.36700 * 27 25 24 46 46 H 1.08999 * 109.75367 * 103.74163 * 27 25 24 47 47 H 1.08999 * 109.51445 * 288.90327 * 28 27 25 48 48 H 1.09005 * 109.51510 * 168.75984 * 28 27 25 49 49 H 1.08998 * 109.47109 * 170.50952 * 29 28 27 50 50 H 1.09001 * 109.46699 * 50.52196 * 29 28 27 51 51 H 1.08999 * 109.58616 * 282.67108 * 30 24 23 52 52 H 1.08992 * 109.58519 * 43.08707 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 6 4.9757 -2.2741 -0.0001 8 1 5.0085 -2.9663 0.8282 9 6 5.8538 -2.4235 -1.0647 10 7 6.0602 -1.4217 -1.8931 11 14 6.7428 -4.0461 -1.3215 12 1 5.7473 -5.1294 -1.5230 13 1 7.6160 -3.9482 -2.5187 14 1 7.5714 -4.3511 -0.1275 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2501 17 1 1.6978 -1.7556 1.2389 18 7 1.5256 -0.0488 2.4459 19 6 1.4002 -0.7315 3.6012 20 8 1.7127 -1.9022 3.6507 21 6 0.8707 -0.0403 4.8311 22 6 0.8292 -1.0172 5.9779 23 6 1.4129 -0.8503 7.1819 24 7 1.1274 -1.9647 7.9133 25 6 0.3783 -2.7800 7.1333 26 7 0.1994 -2.2033 5.9810 27 6 -0.1443 -4.1260 7.5764 28 6 0.6308 -4.5523 8.8296 29 6 0.6499 -3.3928 9.8300 30 6 1.5349 -2.2646 9.2878 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5132 0.8903 33 1 -0.3634 0.5143 -0.8897 34 1 1.6572 -0.2208 -2.1399 35 1 1.6977 -1.7557 -1.2384 36 1 3.9416 -1.2846 -2.0985 37 1 3.9142 0.3407 -1.3699 38 1 6.6741 -1.5260 -2.6368 39 1 3.9417 -1.2845 2.0984 40 1 3.9164 0.3401 1.3685 41 1 1.2753 0.8876 2.4063 42 1 1.5228 0.7945 5.0880 43 1 -0.1350 0.3314 4.6345 44 1 1.9941 0.0010 7.5044 45 1 0.0072 -4.8584 6.7835 46 1 -1.2065 -4.0503 7.8091 47 1 1.6529 -4.8126 8.5546 48 1 0.1439 -5.4159 9.2827 49 1 1.0489 -3.7413 10.7825 50 1 -0.3646 -3.0216 9.9752 51 1 2.5780 -2.5807 9.2989 52 1 1.4137 -1.3759 9.9070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966236530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:50 Heat of formation + Delta-G solvation = 32.011227 kcal Electronic energy + Delta-G solvation = -30901.917292 eV Core-core repulsion = 26902.177286 eV Total energy + Delta-G solvation = -3999.740007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.36041 -39.45856 -37.57013 -36.77809 -34.29875 -33.36416 -32.84033 -31.82699 -30.99282 -29.28226 -28.75502 -27.58935 -26.83162 -24.24659 -23.91237 -22.47111 -22.30647 -21.00758 -20.56657 -19.77555 -19.29370 -19.02640 -17.07031 -16.70699 -16.60279 -15.94036 -15.53517 -15.13074 -14.71231 -14.52820 -14.38096 -14.32429 -13.86917 -13.81003 -13.66651 -13.54762 -13.36531 -13.20143 -12.99251 -12.60830 -12.33601 -12.15542 -11.97380 -11.81976 -11.52947 -11.52342 -11.42954 -11.36559 -11.33583 -10.93099 -10.71672 -10.54894 -10.16642 -10.09569 -9.83519 -9.80009 -9.67648 -9.51489 -9.48981 -9.20567 -8.60483 -8.28236 -8.19321 -6.58018 -5.70526 -3.11721 1.99883 2.66106 3.07325 3.18952 3.46407 3.50415 3.53980 3.74414 4.05545 4.19383 4.26038 4.33652 4.59662 4.74318 4.88060 4.95021 4.99332 5.04737 5.19419 5.24150 5.28250 5.34686 5.38631 5.42366 5.46776 5.48315 5.52367 5.59413 5.64125 5.71854 5.77313 5.90314 6.02902 6.10000 6.20544 6.28204 6.30050 6.35278 6.41308 6.68082 6.72264 6.74436 6.85149 6.88121 6.96410 7.15656 7.18097 7.44795 7.73132 7.90829 8.01689 8.20878 8.53904 8.79060 9.30811 9.93525 10.49400 11.38184 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.002573 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.430022 B =10877.614851 C =12375.498815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.134 4.134 5 C 0.168 3.832 6 N -0.588 5.588 7 C -0.247 4.247 8 H 0.065 0.935 9 C 0.001 3.999 10 N -0.905 5.905 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.143 3.857 16 C 0.136 3.864 17 H 0.084 0.916 18 N -0.727 5.727 19 C 0.511 3.489 20 O -0.516 6.516 21 C -0.054 4.054 22 C 0.022 3.978 23 C -0.052 4.052 24 N -0.459 5.459 25 C 0.205 3.795 26 N -0.457 5.457 27 C -0.033 4.033 28 C -0.126 4.126 29 C -0.134 4.134 30 C 0.104 3.896 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.392 0.608 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.173 0.827 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 3.517 22.127 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.377 4.377 8 H 0.083 0.917 9 C -0.197 4.197 10 N -0.550 5.550 11 Si 0.732 3.268 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.015 3.985 16 C 0.030 3.970 17 H 0.102 0.898 18 N -0.379 5.379 19 C 0.296 3.704 20 O -0.390 6.390 21 C -0.095 4.095 22 C -0.108 4.108 23 C -0.185 4.185 24 N -0.143 5.143 25 C -0.058 4.058 26 N -0.175 5.175 27 C -0.072 4.072 28 C -0.164 4.164 29 C -0.171 4.171 30 C -0.018 4.018 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.225 0.775 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.190 0.810 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.467 2.299 21.520 26.032 hybrid contribution 0.995 0.228 0.473 1.125 sum -13.471 2.527 21.993 25.914 Atomic orbital electron populations 1.21840 0.96052 1.01547 1.00591 1.21292 0.94528 0.99546 0.95584 0.91620 1.22247 1.00626 0.99553 0.94918 1.20831 0.87367 0.97238 0.90382 1.43983 1.48098 1.39754 0.99213 1.19187 1.09601 1.02806 1.06099 0.91714 1.25000 0.97289 0.97482 0.99931 1.70034 1.37905 1.29029 1.18049 0.86363 0.79223 0.83981 0.77218 1.20997 1.21683 1.20926 1.21187 0.90426 0.96408 0.90447 1.21654 0.96313 0.96926 0.82077 0.89819 1.46103 1.67089 1.14097 1.10612 1.20318 0.78579 0.87453 0.84091 1.90753 1.47998 1.15972 1.84282 1.19880 1.03022 0.96196 0.90410 1.19938 1.02147 0.94874 0.93853 1.22173 1.08783 0.93641 0.93921 1.45273 1.40741 1.15564 1.12704 1.23243 0.98715 0.96339 0.87479 1.69945 1.22438 1.06787 1.18284 1.20158 0.99589 0.89601 0.97826 1.21682 1.01703 0.98018 0.95027 1.21893 1.00635 0.95114 0.99504 1.21943 0.99858 0.99828 0.80216 0.92984 0.93332 0.93158 0.92848 0.92484 0.89335 0.96407 0.93700 0.92584 0.96666 0.77535 0.88146 0.88319 0.81019 0.88631 0.89543 0.91014 0.90020 0.89418 0.90674 0.89891 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.02 37.16 0.34 -1.67 16 2 C -0.09 -1.53 2.27 -90.58 -0.21 -1.73 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -2.61 5.36 -26.61 -0.14 -2.75 16 5 C 0.17 4.09 5.31 -3.71 -0.02 4.07 16 6 N -0.59 -15.53 2.99 -172.31 -0.52 -16.05 16 7 C -0.25 -7.21 9.59 -15.06 -0.14 -7.36 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 9 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 10 N -0.91 -26.96 11.19 55.49 0.62 -26.34 16 11 Si 0.90 22.72 29.59 -169.99 -5.03 17.69 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 C 0.14 3.28 6.09 -3.71 -0.02 3.25 16 16 C 0.14 2.58 2.06 -67.81 -0.14 2.44 16 17 H 0.08 1.88 7.58 -51.93 -0.39 1.48 16 18 N -0.73 -11.09 4.37 -53.69 -0.23 -11.33 16 19 C 0.51 8.57 7.79 -10.99 -0.09 8.49 16 20 O -0.52 -11.43 15.24 5.56 0.08 -11.35 16 21 C -0.05 -0.66 6.26 -29.03 -0.18 -0.85 16 22 C 0.02 0.32 5.87 -82.71 -0.49 -0.17 16 23 C -0.05 -0.62 11.53 -16.76 -0.19 -0.81 16 24 N -0.46 -5.07 3.13 -113.74 -0.36 -5.43 16 25 C 0.20 2.72 7.65 -155.24 -1.19 1.53 16 26 N -0.46 -7.59 10.63 -6.88 -0.07 -7.66 16 27 C -0.03 -0.31 6.33 -27.51 -0.17 -0.48 16 28 C -0.13 -0.80 5.96 -26.45 -0.16 -0.96 16 29 C -0.13 -0.67 5.94 -26.50 -0.16 -0.83 16 30 C 0.10 0.69 6.98 -3.90 -0.03 0.66 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.60 7.35 -51.93 -0.38 0.21 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.39 4.56 8.30 -40.82 -0.34 4.22 16 42 H 0.10 0.91 8.11 -51.93 -0.42 0.48 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 51 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 407.18 15.07 6.14 6.14 Total: -1.00 -37.68 407.18 -11.44 -49.11 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.99 Total: 2.43 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -3.07 Total: 2.79 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.56 Total: -66.81 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.68 -11.44 -49.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966236530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.125 kcal (2) G-P(sol) polarization free energy of solvation -37.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds