Wall clock time and date at job start Wed Apr 1 2020 04:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.44900 * 2 1 4 4 C 1.53044 * 109.45605 * 240.03192 * 2 1 3 5 5 C 1.53196 * 109.30810 * 178.61485 * 4 2 1 6 6 N 1.46921 * 108.77580 * 54.63940 * 5 4 2 7 7 C 1.36938 * 120.63311 * 126.37026 * 6 5 4 8 8 H 1.07997 * 120.00111 * 207.68195 * 7 6 5 9 9 C 1.38811 * 119.99833 * 27.68388 * 7 6 5 10 10 N 1.31622 * 119.99967 * 17.36569 * 9 7 6 11 11 Si 1.86800 * 120.00071 * 197.35911 * 9 7 6 12 12 H 1.48501 * 109.46709 * 60.00545 * 11 9 7 13 13 H 1.48497 * 109.47232 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47317 * 300.00363 * 11 9 7 15 15 C 1.46925 * 118.73797 * 306.38481 * 6 5 4 16 16 C 1.53037 * 109.45805 * 119.96726 * 2 1 3 17 17 H 1.08998 * 109.52645 * 61.41876 * 16 2 1 18 18 N 1.46496 * 109.49977 * 301.33559 * 16 2 1 19 19 C 1.34777 * 120.00099 * 155.16575 * 18 16 2 20 20 O 1.21278 * 120.00251 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99767 * 180.02562 * 19 18 16 22 22 C 1.50705 * 109.47306 * 179.97438 * 21 19 18 23 23 C 1.34849 * 125.96222 * 124.99426 * 22 21 19 24 24 N 1.36317 * 106.68746 * 179.97438 * 23 22 21 25 25 C 1.35426 * 107.39973 * 0.05368 * 24 23 22 26 26 N 1.30094 * 108.62575 * 359.65831 * 25 24 23 27 27 C 1.51035 * 123.98219 * 179.88003 * 25 24 23 28 28 C 1.53398 * 108.20911 * 344.04325 * 27 25 24 29 29 C 1.53148 * 109.24035 * 48.83241 * 28 27 25 30 30 C 1.46472 * 127.77515 * 180.02562 * 24 23 22 31 31 H 1.09003 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47360 * 299.96153 * 1 2 3 33 33 H 1.09000 * 109.47423 * 59.97161 * 1 2 3 34 34 H 1.09000 * 109.49995 * 58.66715 * 4 2 1 35 35 H 1.08996 * 109.50406 * 298.56614 * 4 2 1 36 36 H 1.09002 * 109.58271 * 174.42487 * 5 4 2 37 37 H 1.09006 * 109.58458 * 294.70550 * 5 4 2 38 38 H 0.96998 * 119.99685 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.59031 * 173.39948 * 15 6 5 40 40 H 1.09003 * 109.59243 * 293.68444 * 15 6 5 41 41 H 0.97000 * 119.99961 * 335.16479 * 18 16 2 42 42 H 1.09000 * 109.47298 * 299.99944 * 21 19 18 43 43 H 1.09001 * 109.47325 * 60.00280 * 21 19 18 44 44 H 1.08005 * 126.66101 * 359.97438 * 23 22 21 45 45 H 1.09004 * 109.71546 * 224.36700 * 27 25 24 46 46 H 1.08999 * 109.75367 * 103.74163 * 27 25 24 47 47 H 1.08999 * 109.51445 * 288.90327 * 28 27 25 48 48 H 1.09005 * 109.51510 * 168.75984 * 28 27 25 49 49 H 1.08998 * 109.47109 * 170.50952 * 29 28 27 50 50 H 1.09001 * 109.46699 * 50.52196 * 29 28 27 51 51 H 1.08999 * 109.58616 * 282.67108 * 30 24 23 52 52 H 1.08992 * 109.58519 * 43.08707 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 6 4.9757 -2.2741 -0.0001 8 1 5.0085 -2.9663 0.8282 9 6 5.8538 -2.4235 -1.0647 10 7 6.0602 -1.4217 -1.8931 11 14 6.7428 -4.0461 -1.3215 12 1 5.7473 -5.1294 -1.5230 13 1 7.6160 -3.9482 -2.5187 14 1 7.5714 -4.3511 -0.1275 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2501 17 1 1.6978 -1.7556 1.2389 18 7 1.5256 -0.0488 2.4459 19 6 1.4002 -0.7315 3.6012 20 8 1.7127 -1.9022 3.6507 21 6 0.8707 -0.0403 4.8311 22 6 0.8292 -1.0172 5.9779 23 6 1.4129 -0.8503 7.1819 24 7 1.1274 -1.9647 7.9133 25 6 0.3783 -2.7800 7.1333 26 7 0.1994 -2.2033 5.9810 27 6 -0.1443 -4.1260 7.5764 28 6 0.6308 -4.5523 8.8296 29 6 0.6499 -3.3928 9.8300 30 6 1.5349 -2.2646 9.2878 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5132 0.8903 33 1 -0.3634 0.5143 -0.8897 34 1 1.6572 -0.2208 -2.1399 35 1 1.6977 -1.7557 -1.2384 36 1 3.9416 -1.2846 -2.0985 37 1 3.9142 0.3407 -1.3699 38 1 6.6741 -1.5260 -2.6368 39 1 3.9417 -1.2845 2.0984 40 1 3.9164 0.3401 1.3685 41 1 1.2753 0.8876 2.4063 42 1 1.5228 0.7945 5.0880 43 1 -0.1350 0.3314 4.6345 44 1 1.9941 0.0010 7.5044 45 1 0.0072 -4.8584 6.7835 46 1 -1.2065 -4.0503 7.8091 47 1 1.6529 -4.8126 8.5546 48 1 0.1439 -5.4159 9.2827 49 1 1.0489 -3.7413 10.7825 50 1 -0.3646 -3.0216 9.9752 51 1 2.5780 -2.5807 9.2989 52 1 1.4137 -1.3759 9.9070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966236530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:48 Heat of formation + Delta-G solvation = 7.401734 kcal Electronic energy + Delta-G solvation = -30902.984440 eV Core-core repulsion = 26902.177286 eV Total energy + Delta-G solvation = -4000.807155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.21845 -40.90756 -39.13261 -37.49434 -36.12251 -34.40926 -34.13476 -33.05566 -32.78570 -30.59617 -29.75965 -29.02160 -28.08038 -25.89161 -24.89904 -23.88672 -23.12718 -22.70538 -21.81145 -21.21660 -20.53390 -19.92395 -18.74316 -17.99936 -17.65770 -17.13327 -16.71722 -16.64200 -16.27105 -15.60964 -15.49974 -15.28468 -15.13107 -15.06930 -14.92023 -14.77496 -14.49455 -14.45941 -14.34548 -14.13355 -13.58309 -13.39638 -13.22219 -13.13076 -13.05876 -12.75391 -12.66909 -12.59752 -12.31560 -12.06474 -12.02526 -11.96504 -11.94938 -11.86981 -11.65721 -11.39842 -11.23659 -10.84059 -10.62891 -10.60292 -10.36726 -9.98926 -9.10661 -8.70311 -7.92494 -5.37618 1.12470 1.40922 1.43888 1.51514 1.86402 1.93507 2.05837 2.42656 2.56529 3.20734 3.37663 3.62776 3.70141 3.74154 3.78691 3.80092 3.99601 4.02899 4.13647 4.19952 4.27809 4.35336 4.41023 4.45668 4.46649 4.54587 4.58754 4.66224 4.68582 4.75762 4.83041 4.83685 4.93558 4.95755 4.97157 4.99041 5.03670 5.09557 5.12327 5.21743 5.26510 5.26895 5.44580 5.46423 5.47163 5.60671 5.65445 5.77190 5.85909 6.34817 6.35777 6.78710 7.10906 7.29328 7.52405 7.81024 8.30886 9.12902 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.002573 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.430022 B =10877.614851 C =12375.498815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.270 4.270 8 H 0.047 0.953 9 C -0.042 4.042 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.279 1.279 15 C 0.147 3.853 16 C 0.154 3.846 17 H 0.044 0.956 18 N -0.710 5.710 19 C 0.506 3.494 20 O -0.578 6.578 21 C -0.042 4.042 22 C -0.021 4.021 23 C -0.045 4.045 24 N -0.457 5.457 25 C 0.185 3.815 26 N -0.514 5.514 27 C -0.035 4.035 28 C -0.121 4.121 29 C -0.127 4.127 30 C 0.094 3.906 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.008 0.992 38 H 0.253 0.747 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.415 0.585 42 H 0.139 0.861 43 H 0.122 0.878 44 H 0.208 0.792 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 5.233 24.148 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.400 4.400 8 H 0.065 0.935 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.208 1.208 13 H -0.208 1.208 14 H -0.205 1.205 15 C 0.020 3.980 16 C 0.047 3.953 17 H 0.062 0.938 18 N -0.363 5.363 19 C 0.294 3.706 20 O -0.456 6.456 21 C -0.082 4.082 22 C -0.150 4.150 23 C -0.179 4.179 24 N -0.140 5.140 25 C -0.079 4.079 26 N -0.233 5.233 27 C -0.074 4.074 28 C -0.159 4.159 29 C -0.165 4.165 30 C -0.027 4.027 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.252 0.748 42 H 0.157 0.843 43 H 0.140 0.860 44 H 0.224 0.776 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.077 0.923 48 H 0.123 0.877 49 H 0.135 0.865 50 H 0.096 0.904 51 H 0.106 0.894 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.727 4.069 23.576 28.630 hybrid contribution 1.423 -0.310 -0.104 1.460 sum -14.304 3.759 23.471 27.742 Atomic orbital electron populations 1.21759 0.93018 1.01383 1.02938 1.21223 0.96870 0.99405 0.92565 0.89773 1.22093 0.96789 0.99596 0.97859 1.20713 0.90600 0.95512 0.88443 1.44206 1.48258 1.39721 1.00940 1.19319 1.10748 1.03777 1.06195 0.93494 1.25701 0.98063 1.00552 0.99527 1.70156 1.38350 1.30512 1.18245 0.85391 0.78092 0.79998 0.77281 1.20757 1.20811 1.20464 1.21200 0.93134 0.95589 0.88033 1.21111 0.93394 0.95884 0.84943 0.93810 1.45862 1.66201 1.15053 1.09195 1.21253 0.77191 0.86858 0.85318 1.90734 1.50656 1.18955 1.85261 1.19948 1.04772 0.96210 0.87317 1.20428 1.03719 0.95218 0.95646 1.22732 1.07527 0.94471 0.93214 1.45576 1.39575 1.14787 1.14021 1.23799 0.99128 0.97536 0.87389 1.69868 1.24522 1.08451 1.20477 1.20303 1.00777 0.87657 0.98704 1.21680 1.00609 0.99559 0.94064 1.21913 1.00722 0.93836 0.99997 1.22346 1.00409 1.01669 0.78265 0.94433 0.91035 0.90785 0.89760 0.94087 0.92724 0.97427 0.93747 0.95911 0.95874 0.74761 0.84277 0.85996 0.77573 0.90550 0.88314 0.92298 0.87710 0.86494 0.90387 0.89417 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.02 71.98 0.65 -2.70 16 2 C -0.08 -2.63 2.27 -10.77 -0.02 -2.65 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.12 -4.79 5.36 30.67 0.16 -4.62 16 5 C 0.17 8.65 5.31 86.36 0.46 9.10 16 6 N -0.61 -33.48 2.99 -699.08 -2.09 -35.57 16 7 C -0.27 -16.51 9.59 84.03 0.81 -15.71 16 8 H 0.05 2.96 7.89 -2.91 -0.02 2.94 16 9 C -0.04 -2.52 4.91 84.86 0.42 -2.11 16 10 N -0.93 -56.60 11.19 21.65 0.24 -56.36 16 11 Si 0.96 47.95 29.59 68.60 2.03 49.98 16 12 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 15 C 0.15 7.01 6.09 86.37 0.53 7.54 16 16 C 0.15 5.93 2.06 45.07 0.09 6.02 16 17 H 0.04 2.07 7.58 -2.39 -0.02 2.05 16 18 N -0.71 -20.99 4.37 -442.17 -1.93 -22.92 16 19 C 0.51 17.06 7.79 87.66 0.68 17.74 16 20 O -0.58 -27.01 15.24 -3.02 -0.05 -27.05 16 21 C -0.04 -0.97 6.26 29.10 0.18 -0.79 16 22 C -0.02 -0.60 5.87 41.40 0.24 -0.35 16 23 C -0.05 -1.00 11.53 83.22 0.96 -0.05 16 24 N -0.46 -9.61 3.13 -513.77 -1.61 -11.22 16 25 C 0.18 4.99 7.65 138.23 1.06 6.05 16 26 N -0.51 -17.70 10.63 -175.68 -1.87 -19.56 16 27 C -0.04 -0.68 6.33 30.09 0.19 -0.49 16 28 C -0.12 -1.40 5.96 30.78 0.18 -1.22 16 29 C -0.13 -0.95 5.94 30.74 0.18 -0.77 16 30 C 0.09 1.02 6.98 86.48 0.60 1.62 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.48 7.35 -2.39 -0.02 1.46 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 3.09 6.04 -2.39 -0.01 3.08 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.02 1.19 7.93 -2.39 -0.02 1.18 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.42 8.44 8.30 -92.71 -0.77 7.67 16 42 H 0.14 2.04 8.11 -2.39 -0.02 2.02 16 43 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 48 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 51 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -89.83 407.18 2.23 -87.60 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.13 Total: 18.49 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 7.37 Total: 16.62 kcal Atomic # 7 Polarization: -138.37 SS G_CDS: -7.26 Total: -145.63 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -89.83 2.23 -87.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966236530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.005 kcal (2) G-P(sol) polarization free energy of solvation -89.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds