Wall clock time and date at job start Wed Apr 1 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.45230 * 2 1 4 4 C 1.53045 * 109.46276 * 240.03217 * 2 1 3 5 5 C 1.53191 * 109.31413 * 178.61551 * 4 2 1 6 6 N 1.46920 * 108.77839 * 54.63459 * 5 4 2 7 7 C 1.36940 * 120.63052 * 126.41119 * 6 5 4 8 8 H 1.07999 * 119.99933 * 330.38761 * 7 6 5 9 9 C 1.38808 * 119.99995 * 150.38882 * 7 6 5 10 10 N 1.31622 * 120.00033 * 344.58250 * 9 7 6 11 11 Si 1.86800 * 120.00233 * 164.58364 * 9 7 6 12 12 H 1.48497 * 109.47018 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46814 * 119.99521 * 11 9 7 14 14 H 1.48491 * 109.47215 * 239.99894 * 11 9 7 15 15 C 1.46998 * 118.75586 * 306.39430 * 6 5 4 16 16 C 1.53037 * 109.46201 * 119.96850 * 2 1 3 17 17 H 1.09004 * 109.49459 * 301.36978 * 16 2 1 18 18 N 1.46497 * 109.49905 * 61.43006 * 16 2 1 19 19 C 1.34780 * 120.00159 * 204.93706 * 18 16 2 20 20 O 1.21632 * 119.99782 * 354.98558 * 19 18 16 21 21 C 1.47161 * 119.99942 * 174.98027 * 19 18 16 22 22 C 1.37190 * 127.04613 * 94.75180 * 21 19 18 23 23 C 1.40086 * 105.88633 * 179.97438 * 22 21 19 24 24 N 1.30105 * 107.72667 * 359.92399 * 23 22 21 25 25 N 1.28830 * 110.78025 * 359.85003 * 24 23 22 26 26 C 1.46499 * 125.15335 * 180.16582 * 25 24 23 27 27 C 1.50863 * 123.21817 * 179.82218 * 23 22 21 28 28 C 1.53399 * 108.18414 * 343.21982 * 27 23 22 29 29 C 1.53027 * 109.88531 * 50.74160 * 28 27 23 30 30 C 1.50387 * 129.91052 * 0.11527 * 22 21 19 31 31 H 1.09001 * 109.47583 * 300.03686 * 1 2 3 32 32 H 1.09007 * 109.47124 * 60.03330 * 1 2 3 33 33 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.50010 * 298.57012 * 4 2 1 35 35 H 1.09004 * 109.49634 * 58.66596 * 4 2 1 36 36 H 1.09006 * 109.58496 * 174.42665 * 5 4 2 37 37 H 1.09004 * 109.58778 * 294.70286 * 5 4 2 38 38 H 0.96994 * 120.00200 * 180.02562 * 10 9 7 39 39 H 1.08994 * 109.58225 * 293.82530 * 15 6 5 40 40 H 1.09000 * 109.62912 * 173.37484 * 15 6 5 41 41 H 0.96997 * 120.00186 * 25.21275 * 18 16 2 42 42 H 1.09003 * 109.47127 * 264.78273 * 26 25 24 43 43 H 1.08998 * 109.47310 * 24.77957 * 26 25 24 44 44 H 1.08994 * 109.47305 * 144.78331 * 26 25 24 45 45 H 1.09002 * 109.72757 * 223.54630 * 27 23 22 46 46 H 1.08999 * 109.75776 * 102.90825 * 27 23 22 47 47 H 1.08999 * 109.39842 * 290.61349 * 28 27 23 48 48 H 1.09000 * 109.40633 * 170.87227 * 28 27 23 49 49 H 1.08999 * 109.43152 * 168.52058 * 29 28 27 50 50 H 1.09000 * 109.39888 * 48.63512 * 29 28 27 51 51 H 1.08999 * 109.73218 * 283.23827 * 30 22 21 52 52 H 1.08993 * 109.73570 * 43.87598 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9764 -2.2734 0.0000 8 1 4.9890 -2.9840 -0.8132 9 6 5.8812 -2.3987 1.0452 10 7 6.0790 -1.3912 1.8688 11 14 6.8181 -3.9971 1.2831 12 1 6.4186 -4.9663 0.2313 13 1 8.2766 -3.7351 1.1856 14 1 6.5046 -4.5603 2.6208 15 6 3.5713 -0.6886 1.2651 16 6 2.0398 -0.7208 1.2500 17 1 1.6567 -0.2211 2.1398 18 7 1.5801 -2.1116 1.2342 19 6 1.4528 -2.7925 2.3904 20 8 1.8055 -2.2841 3.4375 21 6 0.8868 -4.1510 2.3858 22 6 1.5790 -5.3345 2.3383 23 6 0.6102 -6.3462 2.3556 24 7 -0.5577 -5.7755 2.4111 25 7 -0.4389 -4.4929 2.4346 26 6 -1.5529 -3.5437 2.4997 27 6 0.9490 -7.8157 2.3121 28 6 2.3985 -7.9588 1.8309 29 6 3.3129 -7.0510 2.6565 30 6 3.0609 -5.5840 2.2816 31 1 -0.3634 0.5144 0.8896 32 1 -0.3634 0.5133 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.6978 -1.7556 -1.2384 35 1 1.6573 -0.2207 -2.1399 36 1 3.9417 -1.2846 -2.0984 37 1 3.9143 0.3407 -1.3699 38 1 6.7115 -1.4785 2.5989 39 1 3.9142 0.3409 1.3682 40 1 3.9412 -1.2844 2.0996 41 1 1.3711 -2.5438 0.3914 42 1 -1.8093 -3.2147 1.4927 43 1 -2.4169 -4.0282 2.9546 44 1 -1.2615 -2.6821 3.1003 45 1 0.2797 -8.3272 1.6203 46 1 0.8479 -8.2468 3.3081 47 1 2.4607 -7.6762 0.7800 48 1 2.7175 -8.9947 1.9455 49 1 4.3537 -7.3036 2.4536 50 1 3.1048 -7.1951 3.7166 51 1 3.4278 -5.3938 1.2730 52 1 3.5716 -4.9299 2.9883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966420488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:28 Heat of formation + Delta-G solvation = 48.096023 kcal Electronic energy + Delta-G solvation = -33320.408204 eV Core-core repulsion = 29321.365686 eV Total energy + Delta-G solvation = -3999.042518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.44538 -39.50125 -37.48760 -36.88618 -34.16329 -32.92399 -32.57743 -31.75047 -31.03475 -29.57052 -28.65910 -27.36846 -27.11713 -24.19548 -23.45037 -23.01551 -22.04470 -21.72070 -21.13085 -19.64201 -18.97990 -18.73639 -17.49585 -16.75282 -16.14983 -15.77067 -15.21218 -15.01501 -14.79259 -14.37966 -14.02846 -13.90674 -13.72687 -13.67471 -13.53117 -13.32079 -13.09467 -12.93498 -12.89060 -12.66658 -12.58775 -12.32949 -11.99073 -11.67906 -11.62824 -11.43288 -11.19716 -11.08965 -10.91866 -10.74998 -10.71154 -10.61743 -10.55225 -10.21780 -10.01310 -9.96483 -9.78792 -9.61356 -9.48029 -8.79446 -8.47742 -8.45685 -8.35365 -6.62987 -5.76378 -3.21382 1.91390 2.36762 2.80231 3.09558 3.38052 3.45098 3.47547 3.67813 4.38109 4.50452 4.90237 4.92094 4.99743 5.01977 5.04670 5.12822 5.17552 5.27302 5.28428 5.32214 5.41876 5.50825 5.53066 5.62116 5.69037 5.73378 5.79254 5.81140 5.86665 5.93612 6.03864 6.08373 6.09866 6.22055 6.22679 6.28938 6.34185 6.39617 6.47298 6.51427 6.54974 6.59403 6.72291 6.81205 6.83615 6.93439 6.96363 7.32094 7.65778 7.81317 7.96737 8.24295 8.47787 8.60807 9.22074 9.85573 10.42058 11.31725 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.006055 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.353539 B = 4623.145734 C = 6920.495605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.253 4.253 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.897 5.897 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.161 3.839 16 C 0.125 3.875 17 H 0.076 0.924 18 N -0.683 5.683 19 C 0.591 3.409 20 O -0.526 6.526 21 C -0.015 4.015 22 C -0.145 4.145 23 C 0.031 3.969 24 N -0.284 5.284 25 N -0.289 5.289 26 C 0.093 3.907 27 C -0.027 4.027 28 C -0.116 4.116 29 C -0.117 4.117 30 C -0.051 4.051 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.098 0.902 41 H 0.397 0.603 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.082 0.918 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 -5.553 -2.256 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.382 4.382 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.200 1.200 13 H -0.219 1.219 14 H -0.211 1.211 15 C 0.034 3.966 16 C 0.019 3.981 17 H 0.094 0.906 18 N -0.333 5.333 19 C 0.373 3.627 20 O -0.401 6.401 21 C -0.141 4.141 22 C -0.155 4.155 23 C -0.130 4.130 24 N -0.113 5.113 25 N -0.078 5.078 26 C -0.047 4.047 27 C -0.066 4.066 28 C -0.154 4.154 29 C -0.154 4.154 30 C -0.089 4.089 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.116 0.884 41 H 0.233 0.767 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.893 -5.228 -1.320 15.839 hybrid contribution 1.193 -0.621 -0.229 1.365 sum -13.700 -5.849 -1.549 14.977 Atomic orbital electron populations 1.21855 0.96102 1.01156 1.01060 1.21312 0.94510 0.99971 0.95449 0.90223 1.22088 0.99412 0.99329 0.96034 1.20926 0.90542 0.96563 0.90377 1.43964 1.48313 1.39583 0.99000 1.19076 1.08863 1.02482 1.07796 0.91978 1.25026 0.96976 0.97033 0.99855 1.69983 1.36650 1.28890 1.18591 0.86429 0.79594 0.83962 0.78131 1.20034 1.21856 1.21064 1.21203 0.86344 0.97909 0.91120 1.21888 0.99441 0.79827 0.96943 0.90639 1.45831 1.65878 1.13792 1.07811 1.16857 0.78882 0.82411 0.84590 1.90833 1.49528 1.67959 1.31827 1.21076 0.85004 0.95798 1.12218 1.20357 0.97201 0.90156 1.07831 1.21808 0.88218 0.97018 1.05955 1.72720 1.25965 0.91074 1.21591 1.45568 1.04708 1.03795 1.53715 1.22053 0.87679 0.91146 1.03871 1.19957 0.96754 0.87911 1.01989 1.21572 0.93681 0.99636 1.00496 1.21572 0.99468 0.94338 1.00028 1.20043 0.89198 0.96534 1.03116 0.93073 0.93024 0.93282 0.92829 0.92754 0.92819 0.96427 0.93638 0.95586 0.88391 0.76728 0.90109 0.88562 0.89219 0.90503 0.90467 0.91404 0.91263 0.91391 0.91833 0.89924 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.05 37.15 0.34 -1.36 16 2 C -0.09 -1.38 2.48 -90.58 -0.22 -1.60 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -1.97 5.20 -26.61 -0.14 -2.11 16 5 C 0.14 2.76 6.52 -3.71 -0.02 2.73 16 6 N -0.59 -13.74 2.91 -172.26 -0.50 -14.24 16 7 C -0.25 -6.63 9.58 -15.06 -0.14 -6.78 16 8 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 9 C 0.01 0.29 4.94 -17.43 -0.09 0.20 16 10 N -0.90 -26.04 11.21 55.49 0.62 -25.42 16 11 Si 0.89 21.47 29.58 -169.99 -5.03 16.44 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.16 3.74 4.89 -3.67 -0.02 3.72 16 16 C 0.12 2.26 2.20 -67.81 -0.15 2.11 16 17 H 0.08 1.40 7.66 -51.93 -0.40 1.00 16 18 N -0.68 -11.98 4.24 -54.85 -0.23 -12.21 16 19 C 0.59 11.40 7.10 -12.64 -0.09 11.31 16 20 O -0.53 -12.09 16.79 5.25 0.09 -12.00 16 21 C -0.01 -0.26 6.70 -82.32 -0.55 -0.81 16 22 C -0.15 -2.55 6.02 -104.46 -0.63 -3.18 16 23 C 0.03 0.48 7.13 -82.55 -0.59 -0.11 16 24 N -0.28 -4.50 11.89 33.65 0.40 -4.10 16 25 N -0.29 -4.41 3.77 -64.10 -0.24 -4.65 16 26 C 0.09 0.99 11.11 59.85 0.66 1.66 16 27 C -0.03 -0.33 6.31 -27.60 -0.17 -0.50 16 28 C -0.12 -1.35 5.85 -26.51 -0.16 -1.51 16 29 C -0.12 -1.64 5.88 -26.46 -0.16 -1.79 16 30 C -0.05 -0.90 6.22 -27.78 -0.17 -1.07 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.56 7.55 -51.93 -0.39 0.17 16 34 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 2.71 6.09 -51.93 -0.32 2.39 16 41 H 0.40 6.55 6.63 -40.82 -0.27 6.28 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 51 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 52 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -32.09 405.46 -9.93 -42.02 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.84 Total: 7.13 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.30 Total: 0.92 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.05 Total: -60.62 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.09 -9.93 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966420488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.116 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds