Wall clock time and date at job start Wed Apr 1 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.45230 * 2 1 4 4 C 1.53045 * 109.46276 * 240.03217 * 2 1 3 5 5 C 1.53191 * 109.31413 * 178.61551 * 4 2 1 6 6 N 1.46920 * 108.77839 * 54.63459 * 5 4 2 7 7 C 1.36940 * 120.63052 * 126.41119 * 6 5 4 8 8 H 1.07999 * 119.99933 * 330.38761 * 7 6 5 9 9 C 1.38808 * 119.99995 * 150.38882 * 7 6 5 10 10 N 1.31622 * 120.00033 * 344.58250 * 9 7 6 11 11 Si 1.86800 * 120.00233 * 164.58364 * 9 7 6 12 12 H 1.48497 * 109.47018 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46814 * 119.99521 * 11 9 7 14 14 H 1.48491 * 109.47215 * 239.99894 * 11 9 7 15 15 C 1.46998 * 118.75586 * 306.39430 * 6 5 4 16 16 C 1.53037 * 109.46201 * 119.96850 * 2 1 3 17 17 H 1.09004 * 109.49459 * 301.36978 * 16 2 1 18 18 N 1.46497 * 109.49905 * 61.43006 * 16 2 1 19 19 C 1.34780 * 120.00159 * 204.93706 * 18 16 2 20 20 O 1.21632 * 119.99782 * 354.98558 * 19 18 16 21 21 C 1.47161 * 119.99942 * 174.98027 * 19 18 16 22 22 C 1.37190 * 127.04613 * 94.75180 * 21 19 18 23 23 C 1.40086 * 105.88633 * 179.97438 * 22 21 19 24 24 N 1.30105 * 107.72667 * 359.92399 * 23 22 21 25 25 N 1.28830 * 110.78025 * 359.85003 * 24 23 22 26 26 C 1.46499 * 125.15335 * 180.16582 * 25 24 23 27 27 C 1.50863 * 123.21817 * 179.82218 * 23 22 21 28 28 C 1.53399 * 108.18414 * 343.21982 * 27 23 22 29 29 C 1.53027 * 109.88531 * 50.74160 * 28 27 23 30 30 C 1.50387 * 129.91052 * 0.11527 * 22 21 19 31 31 H 1.09001 * 109.47583 * 300.03686 * 1 2 3 32 32 H 1.09007 * 109.47124 * 60.03330 * 1 2 3 33 33 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.50010 * 298.57012 * 4 2 1 35 35 H 1.09004 * 109.49634 * 58.66596 * 4 2 1 36 36 H 1.09006 * 109.58496 * 174.42665 * 5 4 2 37 37 H 1.09004 * 109.58778 * 294.70286 * 5 4 2 38 38 H 0.96994 * 120.00200 * 180.02562 * 10 9 7 39 39 H 1.08994 * 109.58225 * 293.82530 * 15 6 5 40 40 H 1.09000 * 109.62912 * 173.37484 * 15 6 5 41 41 H 0.96997 * 120.00186 * 25.21275 * 18 16 2 42 42 H 1.09003 * 109.47127 * 264.78273 * 26 25 24 43 43 H 1.08998 * 109.47310 * 24.77957 * 26 25 24 44 44 H 1.08994 * 109.47305 * 144.78331 * 26 25 24 45 45 H 1.09002 * 109.72757 * 223.54630 * 27 23 22 46 46 H 1.08999 * 109.75776 * 102.90825 * 27 23 22 47 47 H 1.08999 * 109.39842 * 290.61349 * 28 27 23 48 48 H 1.09000 * 109.40633 * 170.87227 * 28 27 23 49 49 H 1.08999 * 109.43152 * 168.52058 * 29 28 27 50 50 H 1.09000 * 109.39888 * 48.63512 * 29 28 27 51 51 H 1.08999 * 109.73218 * 283.23827 * 30 22 21 52 52 H 1.08993 * 109.73570 * 43.87598 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9764 -2.2734 0.0000 8 1 4.9890 -2.9840 -0.8132 9 6 5.8812 -2.3987 1.0452 10 7 6.0790 -1.3912 1.8688 11 14 6.8181 -3.9971 1.2831 12 1 6.4186 -4.9663 0.2313 13 1 8.2766 -3.7351 1.1856 14 1 6.5046 -4.5603 2.6208 15 6 3.5713 -0.6886 1.2651 16 6 2.0398 -0.7208 1.2500 17 1 1.6567 -0.2211 2.1398 18 7 1.5801 -2.1116 1.2342 19 6 1.4528 -2.7925 2.3904 20 8 1.8055 -2.2841 3.4375 21 6 0.8868 -4.1510 2.3858 22 6 1.5790 -5.3345 2.3383 23 6 0.6102 -6.3462 2.3556 24 7 -0.5577 -5.7755 2.4111 25 7 -0.4389 -4.4929 2.4346 26 6 -1.5529 -3.5437 2.4997 27 6 0.9490 -7.8157 2.3121 28 6 2.3985 -7.9588 1.8309 29 6 3.3129 -7.0510 2.6565 30 6 3.0609 -5.5840 2.2816 31 1 -0.3634 0.5144 0.8896 32 1 -0.3634 0.5133 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.6978 -1.7556 -1.2384 35 1 1.6573 -0.2207 -2.1399 36 1 3.9417 -1.2846 -2.0984 37 1 3.9143 0.3407 -1.3699 38 1 6.7115 -1.4785 2.5989 39 1 3.9142 0.3409 1.3682 40 1 3.9412 -1.2844 2.0996 41 1 1.3711 -2.5438 0.3914 42 1 -1.8093 -3.2147 1.4927 43 1 -2.4169 -4.0282 2.9546 44 1 -1.2615 -2.6821 3.1003 45 1 0.2797 -8.3272 1.6203 46 1 0.8479 -8.2468 3.3081 47 1 2.4607 -7.6762 0.7800 48 1 2.7175 -8.9947 1.9455 49 1 4.3537 -7.3036 2.4536 50 1 3.1048 -7.1951 3.7166 51 1 3.4278 -5.3938 1.2730 52 1 3.5716 -4.9299 2.9883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966420488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:27 Heat of formation + Delta-G solvation = 28.604914 kcal Electronic energy + Delta-G solvation = -33321.253402 eV Core-core repulsion = 29321.365686 eV Total energy + Delta-G solvation = -3999.887716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.67760 -41.04759 -39.07705 -37.99861 -35.95343 -34.45658 -33.71089 -33.00018 -32.76687 -31.06166 -29.97430 -28.90612 -28.19850 -25.93591 -24.78042 -24.31360 -23.43428 -22.94953 -22.72705 -21.00400 -20.34234 -20.12627 -18.80489 -18.63025 -17.40456 -17.03280 -16.87376 -16.70553 -15.95478 -15.80932 -15.67396 -15.48938 -15.10474 -14.85376 -14.80406 -14.71952 -14.57909 -14.23133 -14.04941 -13.84453 -13.69863 -13.59531 -13.43894 -13.14850 -12.99971 -12.75755 -12.74599 -12.64402 -12.51396 -12.28922 -12.20551 -11.95069 -11.78412 -11.68598 -11.58299 -11.41512 -11.21190 -11.15981 -11.08412 -10.55234 -10.09774 -10.03971 -9.60291 -8.62087 -7.85795 -5.32169 0.59851 1.08825 1.39426 1.42797 1.51001 1.56660 1.67540 2.28655 2.49093 3.27388 3.31497 3.55701 3.68369 3.84897 3.89485 3.96691 3.98136 4.05730 4.10126 4.11598 4.24508 4.32603 4.48823 4.50056 4.53922 4.56784 4.64083 4.65893 4.66971 4.68851 4.78267 4.86982 4.94839 4.97412 5.01014 5.06346 5.13661 5.16188 5.19909 5.22457 5.24796 5.29000 5.44147 5.44843 5.47849 5.55217 5.58489 5.65360 5.71277 5.80519 6.40562 6.45038 7.01852 7.09576 7.15740 7.88110 8.39201 9.19281 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.006055 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.353539 B = 4623.145734 C = 6920.495605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.599 5.599 7 C -0.245 4.245 8 H 0.066 0.934 9 C -0.044 4.044 10 N -0.933 5.933 11 Si 0.939 3.061 12 H -0.255 1.255 13 H -0.295 1.295 14 H -0.294 1.294 15 C 0.171 3.829 16 C 0.135 3.865 17 H 0.070 0.930 18 N -0.668 5.668 19 C 0.595 3.405 20 O -0.573 6.573 21 C -0.034 4.034 22 C -0.167 4.167 23 C 0.029 3.971 24 N -0.283 5.283 25 N -0.282 5.282 26 C 0.081 3.919 27 C -0.026 4.026 28 C -0.108 4.108 29 C -0.115 4.115 30 C -0.049 4.049 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.244 0.756 39 H 0.000 1.000 40 H 0.048 0.952 41 H 0.406 0.594 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.102 0.898 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.095 -7.305 -4.377 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.322 5.322 7 C -0.376 4.376 8 H 0.084 0.916 9 C -0.240 4.240 10 N -0.580 5.580 11 Si 0.768 3.232 12 H -0.179 1.179 13 H -0.223 1.223 14 H -0.221 1.221 15 C 0.044 3.956 16 C 0.029 3.971 17 H 0.088 0.912 18 N -0.318 5.318 19 C 0.378 3.622 20 O -0.451 6.451 21 C -0.161 4.161 22 C -0.178 4.178 23 C -0.131 4.131 24 N -0.113 5.113 25 N -0.070 5.070 26 C -0.057 4.057 27 C -0.065 4.065 28 C -0.146 4.146 29 C -0.152 4.152 30 C -0.087 4.087 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.018 0.982 40 H 0.066 0.934 41 H 0.243 0.757 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.121 0.879 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.057 -6.987 -3.511 19.678 hybrid contribution 2.159 0.011 0.403 2.196 sum -15.899 -6.976 -3.109 17.638 Atomic orbital electron populations 1.21771 0.92782 1.02073 1.02617 1.21280 0.97116 0.99197 0.92930 0.90084 1.21963 0.95703 1.00155 0.97706 1.21141 0.93642 0.95966 0.88194 1.44151 1.48164 1.39417 1.00517 1.19362 1.08206 1.02880 1.07116 0.91638 1.25672 0.98568 0.99439 1.00296 1.70148 1.37793 1.30737 1.19283 0.85608 0.78085 0.81499 0.77982 1.17866 1.22286 1.22089 1.20877 0.89852 0.95223 0.89688 1.21641 0.95646 0.80668 0.99113 0.91199 1.45708 1.64826 1.13477 1.07776 1.17112 0.78051 0.82874 0.84197 1.90806 1.51557 1.69263 1.33480 1.20894 0.86656 0.94794 1.13783 1.20513 0.97294 0.91074 1.08920 1.22364 0.87314 0.98433 1.04998 1.72736 1.25867 0.91177 1.21543 1.45949 1.04543 1.04199 1.52344 1.22454 0.86967 0.90572 1.05748 1.20146 0.97151 0.85626 1.03529 1.21556 0.92933 1.00651 0.99476 1.21595 1.00570 0.92233 1.00824 1.19950 0.89423 0.98489 1.00882 0.92578 0.90490 0.92670 0.92501 0.88987 0.92692 0.96722 0.94688 0.98172 0.93384 0.75732 0.87545 0.86226 0.89506 0.88297 0.88925 0.91864 0.87938 0.91028 0.91468 0.91612 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.05 71.98 0.65 -2.01 16 2 C -0.09 -2.37 2.48 -10.77 -0.03 -2.39 16 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -3.20 5.20 30.67 0.16 -3.04 16 5 C 0.14 5.13 6.52 86.36 0.56 5.69 16 6 N -0.60 -28.80 2.91 -698.92 -2.03 -30.83 16 7 C -0.25 -13.23 9.58 84.03 0.80 -12.43 16 8 H 0.07 3.45 7.88 -2.91 -0.02 3.42 16 9 C -0.04 -2.53 4.94 84.86 0.42 -2.11 16 10 N -0.93 -57.57 11.21 21.65 0.24 -57.33 16 11 Si 0.94 45.98 29.58 68.60 2.03 48.01 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 14 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 15 C 0.17 8.35 4.89 86.35 0.42 8.77 16 16 C 0.14 4.98 2.20 45.07 0.10 5.08 16 17 H 0.07 2.67 7.66 -2.38 -0.02 2.66 16 18 N -0.67 -23.58 4.24 -445.68 -1.89 -25.47 16 19 C 0.59 23.72 7.10 86.59 0.61 24.33 16 20 O -0.57 -27.90 16.79 -4.13 -0.07 -27.97 16 21 C -0.03 -1.21 6.70 40.43 0.27 -0.94 16 22 C -0.17 -5.92 6.02 -19.76 -0.12 -6.04 16 23 C 0.03 0.85 7.13 43.31 0.31 1.16 16 24 N -0.28 -8.37 11.89 -47.47 -0.56 -8.93 16 25 N -0.28 -8.18 3.77 -356.73 -1.34 -9.52 16 26 C 0.08 1.54 11.11 127.77 1.42 2.96 16 27 C -0.03 -0.54 6.31 30.03 0.19 -0.35 16 28 C -0.11 -2.24 5.85 30.74 0.18 -2.06 16 29 C -0.11 -3.15 5.88 30.77 0.18 -2.97 16 30 C -0.05 -1.81 6.22 29.92 0.19 -1.62 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.03 7.55 -2.39 -0.02 1.02 16 34 H 0.06 1.56 6.40 -2.39 -0.02 1.54 16 35 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.05 2.04 7.93 -2.38 -0.02 2.03 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.05 2.85 6.09 -2.39 -0.01 2.84 16 41 H 0.41 12.96 6.63 -92.71 -0.62 12.35 16 42 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 1.72 7.95 -2.39 -0.02 1.70 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 48 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 51 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 52 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.92 405.46 2.99 -72.93 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.30 Total: 27.09 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.32 Total: 12.04 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -5.59 Total: -132.09 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.07 Total: -27.97 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.92 2.99 -72.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966420488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.530 kcal (2) G-P(sol) polarization free energy of solvation -75.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds