Wall clock time and date at job start Wed Apr 1 2020 03:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.45133 * 2 1 4 4 C 1.53042 * 109.45933 * 119.96831 * 2 1 3 5 5 C 1.53203 * 109.31062 * 181.38497 * 4 2 1 6 6 N 1.46921 * 108.77288 * 305.36200 * 5 4 2 7 7 C 1.36942 * 120.62834 * 233.62815 * 6 5 4 8 8 H 1.07993 * 120.00253 * 31.27216 * 7 6 5 9 9 C 1.38817 * 119.99554 * 211.27007 * 7 6 5 10 10 N 1.31612 * 120.00473 * 10.75064 * 9 7 6 11 11 Si 1.86807 * 119.99470 * 190.75142 * 9 7 6 12 12 H 1.48503 * 109.47118 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46789 * 120.00207 * 11 9 7 14 14 H 1.48502 * 109.46776 * 240.00160 * 11 9 7 15 15 C 1.46993 * 118.75739 * 53.61348 * 6 5 4 16 16 C 1.53040 * 109.46195 * 240.03369 * 2 1 3 17 17 H 1.09003 * 109.49867 * 58.62905 * 16 2 1 18 18 N 1.46503 * 109.49945 * 298.56936 * 16 2 1 19 19 C 1.34769 * 120.00220 * 155.06235 * 18 16 2 20 20 O 1.21629 * 119.99978 * 4.76332 * 19 18 16 21 21 C 1.47162 * 119.99943 * 184.76755 * 19 18 16 22 22 C 1.38403 * 126.88740 * 354.59984 * 21 19 18 23 23 C 1.39669 * 105.36432 * 180.22605 * 22 21 19 24 24 N 1.30869 * 107.85931 * 359.56862 * 23 22 21 25 25 N 1.28444 * 110.92606 * 0.45114 * 24 23 22 26 26 C 1.46500 * 125.18960 * 179.73163 * 25 24 23 27 27 C 1.54271 * 110.03052 * 62.32092 * 26 25 24 28 28 C 1.54889 * 104.19502 * 217.10456 * 27 26 25 29 29 C 1.54892 * 102.74883 * 37.93877 * 28 27 26 30 30 C 1.53870 * 110.03497 * 305.15172 * 26 25 24 31 31 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46919 * 299.96658 * 1 2 3 33 33 H 1.09000 * 109.46887 * 59.96334 * 1 2 3 34 34 H 1.09001 * 109.49467 * 301.33178 * 4 2 1 35 35 H 1.08996 * 109.50133 * 61.43531 * 4 2 1 36 36 H 1.08998 * 109.58302 * 65.15224 * 5 4 2 37 37 H 1.08999 * 109.57949 * 185.43428 * 5 4 2 38 38 H 0.96995 * 120.00031 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.63515 * 186.61475 * 15 6 5 40 40 H 1.09002 * 109.58595 * 66.16468 * 15 6 5 41 41 H 0.96999 * 119.99439 * 335.05973 * 18 16 2 42 42 H 1.08006 * 127.31461 * 359.96774 * 22 21 19 43 43 H 1.07999 * 126.07167 * 179.71363 * 23 22 21 44 44 H 1.08999 * 110.01868 * 183.75809 * 26 25 24 45 45 H 1.08996 * 110.48412 * 335.77789 * 27 26 25 46 46 H 1.08994 * 110.48670 * 98.42627 * 27 26 25 47 47 H 1.09000 * 110.75467 * 279.62922 * 28 27 26 48 48 H 1.09000 * 110.75700 * 156.25604 * 28 27 26 49 49 H 1.09004 * 110.48661 * 203.38031 * 29 28 27 50 50 H 1.09001 * 110.48589 * 80.73804 * 29 28 27 51 51 H 1.09001 * 110.03561 * 238.56766 * 30 26 25 52 52 H 1.08998 * 110.03244 * 359.97438 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5715 -0.6886 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9758 -2.2740 0.0000 8 1 4.9703 -3.0002 0.7993 9 6 5.9032 -2.3798 -1.0275 10 7 6.0535 -1.3907 -1.8828 11 14 6.9378 -3.9260 -1.1963 12 1 6.5800 -4.8812 -0.1171 13 1 6.6801 -4.5521 -2.5179 14 1 8.3762 -3.5733 -1.0877 15 6 3.5714 -0.6886 -1.2651 16 6 2.0399 -0.7207 -1.2501 17 1 1.6568 -0.2211 -2.1399 18 7 1.5801 -2.1117 -1.2343 19 6 1.4528 -2.7925 -2.3904 20 8 1.8014 -2.2823 -3.4381 21 6 0.8921 -4.1531 -2.3852 22 6 0.5489 -4.9059 -1.2757 23 6 0.0710 -6.1162 -1.7832 24 7 0.1283 -6.0544 -3.0891 25 7 0.6052 -4.9258 -3.4745 26 6 0.8099 -4.5278 -4.8695 27 6 -0.5419 -4.4897 -5.6119 28 6 -0.2106 -5.0142 -7.0312 29 6 0.8260 -6.1301 -6.7499 30 6 1.6796 -5.5708 -5.5930 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6572 -0.2207 2.1398 35 1 1.6979 -1.7557 1.2383 36 1 3.9143 0.3409 1.3673 37 1 3.9416 -1.2825 2.0999 38 1 6.7012 -1.4648 -2.6009 39 1 3.9412 -1.2843 -2.0996 40 1 3.9142 0.3409 -1.3682 41 1 1.3674 -2.5426 -0.3917 42 1 0.6364 -4.6200 -0.2379 43 1 -0.2849 -6.9535 -1.2012 44 1 1.2877 -3.5491 -4.9120 45 1 -1.2642 -5.1432 -5.1228 46 1 -0.9214 -3.4692 -5.6613 47 1 0.2277 -4.2250 -7.6421 48 1 -1.1003 -5.4248 -7.5087 49 1 1.4448 -6.3067 -7.6298 50 1 0.3245 -7.0485 -6.4446 51 1 2.5791 -5.0980 -5.9874 52 1 1.9498 -6.3728 -4.9062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966485925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:07 Heat of formation + Delta-G solvation = 51.839324 kcal Electronic energy + Delta-G solvation = -32665.039373 eV Core-core repulsion = 28666.159177 eV Total energy + Delta-G solvation = -3998.880196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.39564 -39.47137 -37.96970 -37.45538 -34.18413 -33.03318 -32.08049 -31.10558 -30.73275 -28.93795 -28.87188 -27.60864 -27.29391 -24.20123 -23.33077 -22.14879 -22.00071 -21.10685 -20.86429 -20.63224 -19.29451 -18.64043 -17.80739 -16.73986 -16.07121 -15.79144 -15.53894 -15.13866 -14.88952 -14.58183 -14.17964 -14.05917 -13.88464 -13.74225 -13.60179 -13.45392 -13.27220 -12.98756 -12.87283 -12.59878 -11.97593 -11.89977 -11.65352 -11.59484 -11.40655 -11.27980 -11.26378 -11.16772 -10.96674 -10.89242 -10.75988 -10.71883 -10.56806 -10.52406 -10.20348 -9.96222 -9.70596 -9.54379 -9.40063 -8.99011 -8.82319 -8.47345 -8.39687 -6.59799 -5.75990 -3.24360 1.56441 2.56180 2.80305 3.37497 3.45254 3.46257 3.59832 3.72530 4.34369 4.43654 4.49802 4.78671 4.86407 4.95755 5.17507 5.22232 5.25959 5.29430 5.32572 5.34984 5.38848 5.44635 5.46526 5.51086 5.54183 5.69895 5.73823 5.76924 5.86302 5.90117 5.91144 5.92155 5.98349 6.05116 6.13637 6.17053 6.19233 6.26825 6.34366 6.42919 6.51866 6.62839 6.67721 6.74638 6.86934 6.96790 6.97791 7.35384 7.69990 7.80992 7.98045 8.28321 8.49740 8.64880 9.23127 9.85337 10.42064 11.31380 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.004389 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.263375 B = 6378.498283 C = 7761.634853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.900 5.900 11 Si 0.897 3.103 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.161 3.839 16 C 0.127 3.873 17 H 0.076 0.924 18 N -0.678 5.678 19 C 0.588 3.412 20 O -0.546 6.546 21 C -0.024 4.024 22 C -0.194 4.194 23 C -0.010 4.010 24 N -0.282 5.282 25 N -0.249 5.249 26 C 0.129 3.871 27 C -0.129 4.129 28 C -0.121 4.121 29 C -0.119 4.119 30 C -0.131 4.131 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.100 0.900 40 H 0.026 0.974 41 H 0.398 0.602 42 H 0.156 0.844 43 H 0.182 0.818 44 H 0.142 0.858 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 -4.115 -2.396 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.169 4.169 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.382 4.382 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.544 5.544 11 Si 0.727 3.273 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.216 1.216 15 C 0.034 3.966 16 C 0.021 3.979 17 H 0.094 0.906 18 N -0.328 5.328 19 C 0.373 3.627 20 O -0.425 6.425 21 C -0.153 4.153 22 C -0.223 4.223 23 C -0.185 4.185 24 N -0.114 5.114 25 N -0.037 5.037 26 C 0.029 3.971 27 C -0.167 4.167 28 C -0.159 4.159 29 C -0.157 4.157 30 C -0.169 4.169 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.234 0.766 42 H 0.174 0.826 43 H 0.199 0.801 44 H 0.159 0.841 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.973 -4.274 -4.373 16.174 hybrid contribution 0.776 -0.621 1.186 1.547 sum -14.198 -4.896 -3.187 15.353 Atomic orbital electron populations 1.21860 0.95964 1.01425 1.01003 1.21319 0.94602 0.99934 0.95425 0.90272 1.22093 0.99316 0.99388 0.96094 1.20942 0.90603 0.96565 0.90337 1.43959 1.48491 1.39457 0.99093 1.19111 1.07758 1.02094 1.09220 0.91959 1.25107 0.97107 0.97164 0.99603 1.69944 1.36448 1.30080 1.17883 0.86303 0.80158 0.83157 0.77663 1.20253 1.21690 1.21614 1.21239 0.86257 0.97899 0.91195 1.21891 0.99343 0.79636 0.97018 0.90576 1.45512 1.65774 1.13951 1.07572 1.16803 0.78269 0.82941 0.84716 1.90694 1.51057 1.69460 1.31303 1.21607 1.09303 0.96217 0.88142 1.22201 1.06411 0.95143 0.98539 1.23469 1.05673 0.99311 0.90082 1.73052 1.17274 1.05285 1.15795 1.45882 1.42201 1.08800 1.06795 1.22856 0.97794 1.01751 0.74698 1.22721 0.95935 1.02204 0.95863 1.22462 0.99160 0.98323 0.95922 1.22326 0.97250 0.98478 0.97654 1.22464 0.98386 0.98250 0.97771 0.93001 0.93069 0.93125 0.92698 0.92749 0.96416 0.92786 0.93657 0.88195 0.95609 0.76608 0.82596 0.80130 0.84095 0.90315 0.90741 0.90926 0.91042 0.91278 0.91196 0.90255 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.05 37.16 0.34 -1.45 16 2 C -0.09 -1.41 2.48 -90.58 -0.22 -1.63 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -1.97 5.20 -26.60 -0.14 -2.11 16 5 C 0.14 2.76 6.51 -3.71 -0.02 2.73 16 6 N -0.59 -13.94 2.90 -172.26 -0.50 -14.44 16 7 C -0.25 -6.75 9.59 -15.06 -0.14 -6.89 16 8 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 9 C 0.01 0.26 5.05 -17.43 -0.09 0.17 16 10 N -0.90 -26.36 11.05 55.49 0.61 -25.75 16 11 Si 0.90 22.24 29.57 -169.99 -5.03 17.22 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 C 0.16 3.76 4.86 -3.67 -0.02 3.74 16 16 C 0.13 2.32 2.20 -67.81 -0.15 2.17 16 17 H 0.08 1.43 7.65 -51.93 -0.40 1.03 16 18 N -0.68 -11.89 4.24 -54.85 -0.23 -12.12 16 19 C 0.59 11.20 7.75 -12.64 -0.10 11.10 16 20 O -0.55 -11.79 14.09 5.25 0.07 -11.72 16 21 C -0.02 -0.41 6.96 -82.06 -0.57 -0.98 16 22 C -0.19 -2.82 10.50 -38.99 -0.41 -3.23 16 23 C -0.01 -0.13 12.03 -17.43 -0.21 -0.34 16 24 N -0.28 -4.35 11.04 30.59 0.34 -4.01 16 25 N -0.25 -4.05 3.06 -49.61 -0.15 -4.20 16 26 C 0.13 1.91 3.60 -66.81 -0.24 1.67 16 27 C -0.13 -1.55 6.51 -25.07 -0.16 -1.71 16 28 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 29 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 30 C -0.13 -1.75 6.47 -25.62 -0.17 -1.92 16 31 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.04 7.94 -51.93 -0.41 0.62 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.10 2.78 6.08 -51.93 -0.32 2.46 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.40 6.32 5.67 -40.82 -0.23 6.08 16 42 H 0.16 1.90 7.59 -52.48 -0.40 1.50 16 43 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.14 2.38 5.36 -51.93 -0.28 2.11 16 45 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.08 1.14 7.63 -51.93 -0.40 0.75 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -31.40 401.31 -10.09 -41.49 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.60 Total: 8.92 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.65 Total: -1.44 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.07 Total: -60.51 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.40 -10.09 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966485925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.331 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds