Wall clock time and date at job start Wed Apr 1 2020 03:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.45133 * 2 1 4 4 C 1.53042 * 109.45933 * 119.96831 * 2 1 3 5 5 C 1.53203 * 109.31062 * 181.38497 * 4 2 1 6 6 N 1.46921 * 108.77288 * 305.36200 * 5 4 2 7 7 C 1.36942 * 120.62834 * 233.62815 * 6 5 4 8 8 H 1.07993 * 120.00253 * 31.27216 * 7 6 5 9 9 C 1.38817 * 119.99554 * 211.27007 * 7 6 5 10 10 N 1.31612 * 120.00473 * 10.75064 * 9 7 6 11 11 Si 1.86807 * 119.99470 * 190.75142 * 9 7 6 12 12 H 1.48503 * 109.47118 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46789 * 120.00207 * 11 9 7 14 14 H 1.48502 * 109.46776 * 240.00160 * 11 9 7 15 15 C 1.46993 * 118.75739 * 53.61348 * 6 5 4 16 16 C 1.53040 * 109.46195 * 240.03369 * 2 1 3 17 17 H 1.09003 * 109.49867 * 58.62905 * 16 2 1 18 18 N 1.46503 * 109.49945 * 298.56936 * 16 2 1 19 19 C 1.34769 * 120.00220 * 155.06235 * 18 16 2 20 20 O 1.21629 * 119.99978 * 4.76332 * 19 18 16 21 21 C 1.47162 * 119.99943 * 184.76755 * 19 18 16 22 22 C 1.38403 * 126.88740 * 354.59984 * 21 19 18 23 23 C 1.39669 * 105.36432 * 180.22605 * 22 21 19 24 24 N 1.30869 * 107.85931 * 359.56862 * 23 22 21 25 25 N 1.28444 * 110.92606 * 0.45114 * 24 23 22 26 26 C 1.46500 * 125.18960 * 179.73163 * 25 24 23 27 27 C 1.54271 * 110.03052 * 62.32092 * 26 25 24 28 28 C 1.54889 * 104.19502 * 217.10456 * 27 26 25 29 29 C 1.54892 * 102.74883 * 37.93877 * 28 27 26 30 30 C 1.53870 * 110.03497 * 305.15172 * 26 25 24 31 31 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46919 * 299.96658 * 1 2 3 33 33 H 1.09000 * 109.46887 * 59.96334 * 1 2 3 34 34 H 1.09001 * 109.49467 * 301.33178 * 4 2 1 35 35 H 1.08996 * 109.50133 * 61.43531 * 4 2 1 36 36 H 1.08998 * 109.58302 * 65.15224 * 5 4 2 37 37 H 1.08999 * 109.57949 * 185.43428 * 5 4 2 38 38 H 0.96995 * 120.00031 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.63515 * 186.61475 * 15 6 5 40 40 H 1.09002 * 109.58595 * 66.16468 * 15 6 5 41 41 H 0.96999 * 119.99439 * 335.05973 * 18 16 2 42 42 H 1.08006 * 127.31461 * 359.96774 * 22 21 19 43 43 H 1.07999 * 126.07167 * 179.71363 * 23 22 21 44 44 H 1.08999 * 110.01868 * 183.75809 * 26 25 24 45 45 H 1.08996 * 110.48412 * 335.77789 * 27 26 25 46 46 H 1.08994 * 110.48670 * 98.42627 * 27 26 25 47 47 H 1.09000 * 110.75467 * 279.62922 * 28 27 26 48 48 H 1.09000 * 110.75700 * 156.25604 * 28 27 26 49 49 H 1.09004 * 110.48661 * 203.38031 * 29 28 27 50 50 H 1.09001 * 110.48589 * 80.73804 * 29 28 27 51 51 H 1.09001 * 110.03561 * 238.56766 * 30 26 25 52 52 H 1.08998 * 110.03244 * 359.97438 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5715 -0.6886 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9758 -2.2740 0.0000 8 1 4.9703 -3.0002 0.7993 9 6 5.9032 -2.3798 -1.0275 10 7 6.0535 -1.3907 -1.8828 11 14 6.9378 -3.9260 -1.1963 12 1 6.5800 -4.8812 -0.1171 13 1 6.6801 -4.5521 -2.5179 14 1 8.3762 -3.5733 -1.0877 15 6 3.5714 -0.6886 -1.2651 16 6 2.0399 -0.7207 -1.2501 17 1 1.6568 -0.2211 -2.1399 18 7 1.5801 -2.1117 -1.2343 19 6 1.4528 -2.7925 -2.3904 20 8 1.8014 -2.2823 -3.4381 21 6 0.8921 -4.1531 -2.3852 22 6 0.5489 -4.9059 -1.2757 23 6 0.0710 -6.1162 -1.7832 24 7 0.1283 -6.0544 -3.0891 25 7 0.6052 -4.9258 -3.4745 26 6 0.8099 -4.5278 -4.8695 27 6 -0.5419 -4.4897 -5.6119 28 6 -0.2106 -5.0142 -7.0312 29 6 0.8260 -6.1301 -6.7499 30 6 1.6796 -5.5708 -5.5930 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6572 -0.2207 2.1398 35 1 1.6979 -1.7557 1.2383 36 1 3.9143 0.3409 1.3673 37 1 3.9416 -1.2825 2.0999 38 1 6.7012 -1.4648 -2.6009 39 1 3.9412 -1.2843 -2.0996 40 1 3.9142 0.3409 -1.3682 41 1 1.3674 -2.5426 -0.3917 42 1 0.6364 -4.6200 -0.2379 43 1 -0.2849 -6.9535 -1.2012 44 1 1.2877 -3.5491 -4.9120 45 1 -1.2642 -5.1432 -5.1228 46 1 -0.9214 -3.4692 -5.6613 47 1 0.2277 -4.2250 -7.6421 48 1 -1.1003 -5.4248 -7.5087 49 1 1.4448 -6.3067 -7.6298 50 1 0.3245 -7.0485 -6.4446 51 1 2.5791 -5.0980 -5.9874 52 1 1.9498 -6.3728 -4.9062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966485925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:06 Heat of formation + Delta-G solvation = 33.825934 kcal Electronic energy + Delta-G solvation = -32665.820492 eV Core-core repulsion = 28666.159177 eV Total energy + Delta-G solvation = -3999.661315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.57497 -40.96929 -39.05273 -38.90885 -35.95848 -34.50635 -33.21265 -32.85716 -32.10868 -30.43795 -29.85596 -28.90222 -28.62115 -25.94726 -24.77288 -23.53465 -23.17526 -22.72520 -21.90767 -21.69931 -20.61345 -20.15180 -19.04024 -18.62442 -17.31826 -17.01735 -16.92476 -16.64529 -16.39940 -15.81981 -15.74341 -15.51371 -15.31158 -15.03475 -14.89882 -14.62804 -14.55693 -14.40661 -14.15152 -14.05476 -13.58298 -13.13970 -12.99799 -12.91908 -12.77671 -12.69771 -12.63836 -12.50027 -12.23518 -12.20645 -12.13885 -12.06699 -11.93354 -11.75640 -11.58934 -11.54938 -11.29445 -11.05634 -10.91405 -10.57845 -10.28573 -9.99549 -9.88165 -8.59138 -7.86170 -5.36010 0.27456 1.36354 1.38112 1.39487 1.47416 1.69090 2.19551 2.34088 2.45969 3.30504 3.31968 3.45657 3.61887 3.70593 3.78930 3.89477 3.90353 4.00667 4.13805 4.16133 4.28225 4.34059 4.36494 4.44480 4.53240 4.61773 4.65883 4.68800 4.72020 4.72881 4.81730 4.86413 4.90017 4.92731 4.98067 5.05221 5.08575 5.10746 5.13449 5.19398 5.26340 5.28091 5.33879 5.48096 5.53036 5.58045 5.61510 5.70160 5.74916 5.81237 6.41570 6.54289 7.10691 7.15718 7.22110 7.87759 8.38870 9.17912 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.004389 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.263375 B = 6378.498283 C = 7761.634853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.601 5.601 7 C -0.245 4.245 8 H 0.069 0.931 9 C -0.048 4.048 10 N -0.934 5.934 11 Si 0.950 3.050 12 H -0.260 1.260 13 H -0.305 1.305 14 H -0.290 1.290 15 C 0.171 3.829 16 C 0.138 3.862 17 H 0.066 0.934 18 N -0.668 5.668 19 C 0.582 3.418 20 O -0.583 6.583 21 C -0.060 4.060 22 C -0.181 4.181 23 C -0.006 4.006 24 N -0.290 5.290 25 N -0.257 5.257 26 C 0.120 3.880 27 C -0.121 4.121 28 C -0.113 4.113 29 C -0.111 4.111 30 C -0.131 4.131 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.013 0.987 37 H 0.057 0.943 38 H 0.244 0.756 39 H 0.050 0.950 40 H -0.002 1.002 41 H 0.408 0.592 42 H 0.182 0.818 43 H 0.221 0.779 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 -5.579 -0.503 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.324 5.324 7 C -0.376 4.376 8 H 0.086 0.914 9 C -0.243 4.243 10 N -0.581 5.581 11 Si 0.780 3.220 12 H -0.184 1.184 13 H -0.233 1.233 14 H -0.217 1.217 15 C 0.044 3.956 16 C 0.032 3.968 17 H 0.084 0.916 18 N -0.318 5.318 19 C 0.368 3.632 20 O -0.465 6.465 21 C -0.188 4.188 22 C -0.210 4.210 23 C -0.181 4.181 24 N -0.122 5.122 25 N -0.044 5.044 26 C 0.020 3.980 27 C -0.160 4.160 28 C -0.151 4.151 29 C -0.149 4.149 30 C -0.169 4.169 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.016 0.984 41 H 0.246 0.754 42 H 0.200 0.800 43 H 0.237 0.763 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.088 0.912 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.743 -5.744 -2.417 18.805 hybrid contribution 1.651 -0.148 0.668 1.787 sum -16.092 -5.892 -1.749 17.225 Atomic orbital electron populations 1.21770 0.93020 1.02177 1.02333 1.21279 0.96867 0.99199 0.93212 0.90289 1.21976 0.95561 1.00496 0.97524 1.21161 0.93715 0.95936 0.88144 1.44152 1.48344 1.39252 1.00652 1.19445 1.07116 1.02588 1.08459 0.91355 1.25770 0.98901 0.99505 1.00138 1.70120 1.37404 1.31921 1.18611 0.85443 0.78785 0.80692 0.77089 1.18410 1.23325 1.21655 1.20892 0.89745 0.95128 0.89789 1.21584 0.95523 0.80722 0.98937 0.91556 1.45372 1.65182 1.13523 1.07728 1.17209 0.77744 0.83797 0.84468 1.90681 1.52604 1.70558 1.32649 1.21582 1.11589 0.95922 0.89719 1.22593 1.04622 0.94795 0.98996 1.24161 1.04451 0.99971 0.89557 1.73053 1.17337 1.04870 1.16986 1.46009 1.42487 1.08976 1.06973 1.22893 0.99488 1.00645 0.74973 1.22680 0.94131 1.02289 0.96852 1.22476 0.99875 0.98155 0.94570 1.22306 0.97098 0.98616 0.96846 1.22463 0.98572 0.97351 0.98505 0.92525 0.90426 0.93175 0.88922 0.91889 0.96852 0.92421 0.94668 0.93148 0.98366 0.75370 0.80042 0.76252 0.87075 0.90594 0.90786 0.90377 0.88678 0.89607 0.90759 0.91228 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.05 71.98 0.65 -2.22 16 2 C -0.09 -2.42 2.48 -10.77 -0.03 -2.44 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -3.16 5.20 30.68 0.16 -3.00 16 5 C 0.14 5.07 6.51 86.37 0.56 5.63 16 6 N -0.60 -28.84 2.90 -698.91 -2.03 -30.87 16 7 C -0.25 -13.27 9.59 84.03 0.81 -12.47 16 8 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 9 C -0.05 -2.75 5.05 84.86 0.43 -2.32 16 10 N -0.93 -57.66 11.05 21.65 0.24 -57.42 16 11 Si 0.95 46.94 29.57 68.60 2.03 48.97 16 12 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 14 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 15 C 0.17 8.40 4.86 86.35 0.42 8.82 16 16 C 0.14 5.15 2.20 45.07 0.10 5.25 16 17 H 0.07 2.60 7.65 -2.39 -0.02 2.58 16 18 N -0.67 -23.32 4.24 -445.68 -1.89 -25.21 16 19 C 0.58 22.86 7.75 86.59 0.67 23.53 16 20 O -0.58 -26.96 14.09 -4.12 -0.06 -27.02 16 21 C -0.06 -2.06 6.96 40.79 0.28 -1.77 16 22 C -0.18 -4.88 10.50 22.65 0.24 -4.65 16 23 C -0.01 -0.15 12.03 85.18 1.02 0.87 16 24 N -0.29 -8.60 11.04 -57.14 -0.63 -9.23 16 25 N -0.26 -8.40 3.06 -310.88 -0.95 -9.35 16 26 C 0.12 3.70 3.60 45.72 0.16 3.87 16 27 C -0.12 -2.88 6.51 31.67 0.21 -2.67 16 28 C -0.11 -2.05 6.91 31.89 0.22 -1.83 16 29 C -0.11 -2.21 6.83 31.67 0.22 -1.99 16 30 C -0.13 -3.62 6.47 31.32 0.20 -3.42 16 31 H 0.06 1.16 7.54 -2.39 -0.02 1.14 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.63 6.40 -2.39 -0.02 1.61 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 2.10 7.94 -2.39 -0.02 2.08 16 38 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.05 2.99 6.08 -2.39 -0.01 2.98 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 41 H 0.41 12.24 5.67 -92.71 -0.53 11.71 16 42 H 0.18 3.78 7.59 -2.91 -0.02 3.76 16 43 H 0.22 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.11 4.09 5.36 -2.39 -0.01 4.08 16 45 H 0.08 1.84 7.76 -2.39 -0.02 1.83 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.06 1.83 7.63 -2.39 -0.02 1.81 16 Total: -1.00 -73.42 401.31 3.42 -70.00 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.39 Total: 30.96 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.33 Total: 9.18 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -5.26 Total: -132.08 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.06 Total: -27.02 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -73.42 3.42 -70.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966485925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.823 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds