Wall clock time and date at job start Wed Apr 1 2020 03:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.45183 * 2 1 4 4 C 1.53041 * 109.45730 * 119.96929 * 2 1 3 5 5 C 1.53195 * 109.31119 * 181.37938 * 4 2 1 6 6 N 1.46924 * 108.78016 * 305.36703 * 5 4 2 7 7 C 1.36937 * 120.63032 * 233.60991 * 6 5 4 8 8 H 1.07999 * 120.00362 * 27.67751 * 7 6 5 9 9 C 1.38812 * 119.99793 * 207.67494 * 7 6 5 10 10 N 1.31616 * 119.99796 * 17.36386 * 9 7 6 11 11 Si 1.86799 * 119.99932 * 197.36378 * 9 7 6 12 12 H 1.48497 * 109.47017 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46998 * 120.00139 * 11 9 7 14 14 H 1.48506 * 109.46869 * 240.00076 * 11 9 7 15 15 C 1.46937 * 118.76066 * 53.58417 * 6 5 4 16 16 C 1.53038 * 109.45992 * 240.03479 * 2 1 3 17 17 H 1.09003 * 109.49708 * 298.60561 * 16 2 1 18 18 N 1.46502 * 109.49965 * 58.66414 * 16 2 1 19 19 C 1.34775 * 120.00295 * 204.93964 * 18 16 2 20 20 O 1.21566 * 120.00135 * 359.97438 * 19 18 16 21 21 C 1.47715 * 119.99663 * 179.97438 * 19 18 16 22 22 C 1.41498 * 126.51425 * 179.97438 * 21 19 18 23 23 C 1.35366 * 105.50149 * 179.97438 * 22 21 19 24 24 N 1.35027 * 107.23115 * 0.02562 * 23 22 21 25 25 C 1.46502 * 124.88668 * 179.73649 * 24 23 22 26 26 C 1.54261 * 110.03354 * 32.89986 * 25 24 23 27 27 C 1.54962 * 104.15988 * 217.14037 * 26 25 24 28 28 C 1.54885 * 102.77921 * 37.89002 * 27 26 25 29 29 C 1.53880 * 110.02776 * 275.68310 * 25 24 23 30 30 N 1.28475 * 110.22734 * 359.97438 * 24 23 22 31 31 H 1.08995 * 109.47572 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46853 * 299.96751 * 1 2 3 33 33 H 1.09002 * 109.46952 * 59.95828 * 1 2 3 34 34 H 1.08994 * 109.49879 * 301.33156 * 4 2 1 35 35 H 1.09004 * 109.49878 * 61.43318 * 4 2 1 36 36 H 1.09004 * 109.58406 * 65.15539 * 5 4 2 37 37 H 1.09001 * 109.58456 * 185.43210 * 5 4 2 38 38 H 0.97009 * 120.00194 * 179.97438 * 10 9 7 39 39 H 1.09009 * 109.61054 * 186.64343 * 15 6 5 40 40 H 1.09002 * 109.56290 * 66.21757 * 15 6 5 41 41 H 0.97008 * 119.99433 * 24.93125 * 18 16 2 42 42 H 1.07998 * 127.25165 * 0.02600 * 22 21 19 43 43 H 1.08001 * 126.38641 * 179.97438 * 23 22 21 44 44 H 1.08997 * 110.01439 * 154.29499 * 25 24 23 45 45 H 1.09006 * 110.48819 * 335.78863 * 26 25 24 46 46 H 1.09001 * 110.48492 * 98.42740 * 26 25 24 47 47 H 1.09002 * 110.72084 * 279.57122 * 27 26 25 48 48 H 1.08999 * 110.92166 * 156.29568 * 27 26 25 49 49 H 1.09003 * 110.48672 * 203.41133 * 28 27 26 50 50 H 1.08996 * 110.59987 * 80.81683 * 28 27 26 51 51 H 1.09001 * 110.03230 * 238.56812 * 29 25 24 52 52 H 1.08999 * 110.03370 * 0.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6888 1.2642 6 7 4.0679 -1.2490 -0.0001 7 6 4.9760 -2.2739 -0.0001 8 1 5.0090 -2.9663 0.8281 9 6 5.8542 -2.4230 -1.0647 10 7 6.0603 -1.4212 -1.8930 11 14 6.7435 -4.0455 -1.3216 12 1 6.3407 -5.0041 -0.2614 13 1 6.3862 -4.6005 -2.6519 14 1 8.2102 -3.8219 -1.2563 15 6 3.5713 -0.6893 -1.2647 16 6 2.0399 -0.7207 -1.2501 17 1 1.6972 -1.7554 -1.2387 18 7 1.5256 -0.0486 -2.4460 19 6 1.3983 -0.7318 -3.6007 20 8 1.7106 -1.9056 -3.6502 21 6 0.8793 -0.0542 -4.8063 22 6 0.6905 -0.6346 -6.0829 23 6 0.2002 0.3575 -6.8625 24 7 0.1049 1.4620 -6.0915 25 6 -0.3786 2.7660 -6.5519 26 6 -1.4626 2.5762 -7.6329 27 6 -1.2030 3.7282 -8.6364 28 6 0.3432 3.8101 -8.6715 29 6 0.7691 3.5506 -7.2116 30 7 0.5037 1.2059 -4.8974 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5145 -0.8896 34 1 1.6573 -0.2208 2.1398 35 1 1.6977 -1.7557 1.2383 36 1 3.9144 0.3407 1.3674 37 1 3.9416 -1.2827 2.0999 38 1 6.6743 -1.5252 -2.6368 39 1 3.9412 -1.2857 -2.0989 40 1 3.9148 0.3400 -1.3680 41 1 1.2767 0.8881 -2.4066 42 1 0.8939 -1.6546 -6.3738 43 1 -0.0645 0.2804 -7.9067 44 1 -0.7832 3.3315 -5.7125 45 1 -1.3469 1.6098 -8.1236 46 1 -2.4570 2.6666 -7.1959 47 1 -1.6312 4.6617 -8.2710 48 1 -1.5993 3.4828 -9.6217 49 1 0.6656 4.8007 -8.9924 50 1 0.7530 3.0445 -9.3303 51 1 0.9208 4.4972 -6.6930 52 1 1.6855 2.9609 -7.1896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966488580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:26 Heat of formation + Delta-G solvation = 54.118214 kcal Electronic energy + Delta-G solvation = -31196.175210 eV Core-core repulsion = 27197.393834 eV Total energy + Delta-G solvation = -3998.781376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.69652 -39.31138 -38.39684 -37.32699 -34.22488 -33.02892 -32.47478 -30.93425 -30.72959 -29.30779 -28.99435 -27.87685 -27.17219 -24.12694 -23.59369 -22.48486 -21.70935 -21.06005 -20.85791 -20.05135 -19.58759 -19.15072 -17.91330 -16.85252 -16.70096 -16.20799 -15.47006 -15.38976 -15.00397 -14.74149 -14.16397 -13.95662 -13.87201 -13.64068 -13.52336 -13.37944 -13.22915 -12.98382 -12.84222 -12.54623 -12.32484 -12.02675 -11.89968 -11.71029 -11.68577 -11.56039 -11.49674 -11.32972 -11.11724 -10.83842 -10.82149 -10.64442 -10.53419 -10.34724 -10.06545 -9.91584 -9.82171 -9.46185 -9.36030 -9.19044 -8.97500 -8.36518 -8.33326 -6.56870 -5.66877 -3.09903 1.76795 2.25548 2.34501 3.48097 3.56385 3.57818 3.67063 3.81998 3.88096 3.99095 4.31055 4.57875 4.62244 4.65962 4.75854 4.84226 4.88853 4.97254 5.04710 5.23160 5.27646 5.35199 5.36103 5.43279 5.49342 5.51405 5.53438 5.62503 5.67785 5.69097 5.74661 5.78226 5.87029 6.01204 6.12154 6.12465 6.20838 6.33667 6.47111 6.50836 6.55176 6.64164 6.78363 6.82912 6.85290 7.05309 7.09249 7.40889 7.83184 7.88195 7.93001 8.18883 8.56610 8.79139 9.31556 9.95914 10.50856 11.40955 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013093 B = 0.002739 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.026559 B =10221.059819 C =11375.442311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.005 3.995 10 N -0.898 5.898 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.291 1.291 15 C 0.167 3.833 16 C 0.125 3.875 17 H 0.083 0.917 18 N -0.705 5.705 19 C 0.598 3.402 20 O -0.526 6.526 21 C -0.006 4.006 22 C -0.178 4.178 23 C -0.024 4.024 24 N -0.279 5.279 25 C 0.145 3.855 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.137 4.137 30 N -0.264 5.264 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.017 0.983 41 H 0.397 0.603 42 H 0.161 0.839 43 H 0.177 0.823 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.082 0.918 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.893 12.949 -12.335 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.219 1.219 15 C 0.040 3.960 16 C 0.019 3.981 17 H 0.101 0.899 18 N -0.355 5.355 19 C 0.381 3.619 20 O -0.400 6.400 21 C -0.167 4.167 22 C -0.206 4.206 23 C -0.166 4.166 24 N -0.067 5.067 25 C 0.044 3.956 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.163 4.163 29 C -0.176 4.176 30 N -0.099 5.099 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.035 0.965 41 H 0.231 0.769 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.664 13.163 -11.872 25.024 hybrid contribution 0.469 -0.951 -0.773 1.312 sum -17.195 12.211 -12.645 24.590 Atomic orbital electron populations 1.21847 0.96045 1.01520 1.00718 1.21295 0.94568 0.99673 0.95540 0.91525 1.22070 0.98939 1.00036 0.95428 1.20953 0.90841 0.96437 0.90174 1.43973 1.48095 1.39863 0.99185 1.19176 1.09709 1.03157 1.06358 0.91594 1.25031 0.97229 0.97390 0.99710 1.70033 1.37446 1.29009 1.17707 0.86250 0.78825 0.83868 0.77986 1.20233 1.21416 1.21859 1.21106 0.86484 0.97474 0.90963 1.22007 0.98330 0.96362 0.81369 0.89923 1.45895 1.65217 1.14266 1.10106 1.16854 0.77911 0.85765 0.81375 1.90829 1.49800 1.15431 1.83941 1.22172 1.07270 0.90686 0.96550 1.21792 1.05793 1.00975 0.92070 1.22630 1.07721 0.86952 0.99324 1.45659 1.45242 1.09801 1.06040 1.22283 0.94929 0.80035 0.98393 1.22845 0.98045 1.00779 0.95756 1.22488 0.96107 0.98148 0.99208 1.22384 0.95552 1.02414 0.95907 1.22609 0.97945 1.00831 0.96197 1.73493 1.15748 1.17557 1.03129 0.92959 0.93226 0.93159 0.92670 0.92089 0.96489 0.92649 0.93768 0.88638 0.96532 0.76876 0.82167 0.80600 0.87159 0.89813 0.90032 0.90778 0.90589 0.90847 0.91122 0.89902 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.02 37.16 0.34 -1.72 16 2 C -0.09 -1.57 2.27 -90.58 -0.21 -1.78 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.12 -2.21 5.36 -26.61 -0.14 -2.35 16 5 C 0.14 3.05 6.51 -3.71 -0.02 3.03 16 6 N -0.59 -15.44 3.00 -172.31 -0.52 -15.96 16 7 C -0.25 -7.33 9.59 -15.06 -0.14 -7.48 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.44 16 9 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 10 N -0.90 -27.59 11.19 55.49 0.62 -26.96 16 11 Si 0.90 23.09 29.59 -169.99 -5.03 18.06 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 C 0.17 4.26 4.88 -3.71 -0.02 4.24 16 16 C 0.12 2.59 2.06 -67.81 -0.14 2.45 16 17 H 0.08 1.93 7.58 -51.93 -0.39 1.54 16 18 N -0.70 -13.16 4.37 -54.68 -0.24 -13.39 16 19 C 0.60 12.08 7.79 -12.39 -0.10 11.98 16 20 O -0.53 -12.70 16.59 5.31 0.09 -12.61 16 21 C -0.01 -0.10 7.13 -82.77 -0.59 -0.69 16 22 C -0.18 -2.59 10.81 -39.36 -0.43 -3.01 16 23 C -0.02 -0.26 10.38 -17.17 -0.18 -0.44 16 24 N -0.28 -3.19 3.13 -53.74 -0.17 -3.36 16 25 C 0.14 1.11 3.87 -66.81 -0.26 0.85 16 26 C -0.14 -0.71 6.36 -25.04 -0.16 -0.87 16 27 C -0.12 -0.48 6.91 -24.70 -0.17 -0.65 16 28 C -0.12 -0.62 6.83 -25.07 -0.17 -0.79 16 29 C -0.14 -0.96 6.60 -25.61 -0.17 -1.13 16 30 N -0.26 -3.90 11.67 33.42 0.39 -3.51 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.69 7.36 -51.93 -0.38 0.30 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.16 7.94 -51.93 -0.41 0.74 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.10 2.87 6.04 -51.92 -0.31 2.55 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.40 6.49 8.03 -40.82 -0.33 6.17 16 42 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 43 H 0.18 1.25 6.83 -52.49 -0.36 0.89 16 44 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.43 5.86 -51.93 -0.30 0.13 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 LS Contribution 407.94 15.07 6.15 6.15 Total: -1.00 -35.05 407.94 -10.14 -45.19 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.79 Total: 4.68 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.64 Total: 1.71 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.09 Total: -63.18 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.05 -10.14 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966488580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.309 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds