Wall clock time and date at job start Wed Apr 1 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.45183 * 2 1 4 4 C 1.53041 * 109.45730 * 119.96929 * 2 1 3 5 5 C 1.53195 * 109.31119 * 181.37938 * 4 2 1 6 6 N 1.46924 * 108.78016 * 305.36703 * 5 4 2 7 7 C 1.36937 * 120.63032 * 233.60991 * 6 5 4 8 8 H 1.07999 * 120.00362 * 27.67751 * 7 6 5 9 9 C 1.38812 * 119.99793 * 207.67494 * 7 6 5 10 10 N 1.31616 * 119.99796 * 17.36386 * 9 7 6 11 11 Si 1.86799 * 119.99932 * 197.36378 * 9 7 6 12 12 H 1.48497 * 109.47017 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46998 * 120.00139 * 11 9 7 14 14 H 1.48506 * 109.46869 * 240.00076 * 11 9 7 15 15 C 1.46937 * 118.76066 * 53.58417 * 6 5 4 16 16 C 1.53038 * 109.45992 * 240.03479 * 2 1 3 17 17 H 1.09003 * 109.49708 * 298.60561 * 16 2 1 18 18 N 1.46502 * 109.49965 * 58.66414 * 16 2 1 19 19 C 1.34775 * 120.00295 * 204.93964 * 18 16 2 20 20 O 1.21566 * 120.00135 * 359.97438 * 19 18 16 21 21 C 1.47715 * 119.99663 * 179.97438 * 19 18 16 22 22 C 1.41498 * 126.51425 * 179.97438 * 21 19 18 23 23 C 1.35366 * 105.50149 * 179.97438 * 22 21 19 24 24 N 1.35027 * 107.23115 * 0.02562 * 23 22 21 25 25 C 1.46502 * 124.88668 * 179.73649 * 24 23 22 26 26 C 1.54261 * 110.03354 * 32.89986 * 25 24 23 27 27 C 1.54962 * 104.15988 * 217.14037 * 26 25 24 28 28 C 1.54885 * 102.77921 * 37.89002 * 27 26 25 29 29 C 1.53880 * 110.02776 * 275.68310 * 25 24 23 30 30 N 1.28475 * 110.22734 * 359.97438 * 24 23 22 31 31 H 1.08995 * 109.47572 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46853 * 299.96751 * 1 2 3 33 33 H 1.09002 * 109.46952 * 59.95828 * 1 2 3 34 34 H 1.08994 * 109.49879 * 301.33156 * 4 2 1 35 35 H 1.09004 * 109.49878 * 61.43318 * 4 2 1 36 36 H 1.09004 * 109.58406 * 65.15539 * 5 4 2 37 37 H 1.09001 * 109.58456 * 185.43210 * 5 4 2 38 38 H 0.97009 * 120.00194 * 179.97438 * 10 9 7 39 39 H 1.09009 * 109.61054 * 186.64343 * 15 6 5 40 40 H 1.09002 * 109.56290 * 66.21757 * 15 6 5 41 41 H 0.97008 * 119.99433 * 24.93125 * 18 16 2 42 42 H 1.07998 * 127.25165 * 0.02600 * 22 21 19 43 43 H 1.08001 * 126.38641 * 179.97438 * 23 22 21 44 44 H 1.08997 * 110.01439 * 154.29499 * 25 24 23 45 45 H 1.09006 * 110.48819 * 335.78863 * 26 25 24 46 46 H 1.09001 * 110.48492 * 98.42740 * 26 25 24 47 47 H 1.09002 * 110.72084 * 279.57122 * 27 26 25 48 48 H 1.08999 * 110.92166 * 156.29568 * 27 26 25 49 49 H 1.09003 * 110.48672 * 203.41133 * 28 27 26 50 50 H 1.08996 * 110.59987 * 80.81683 * 28 27 26 51 51 H 1.09001 * 110.03230 * 238.56812 * 29 25 24 52 52 H 1.08999 * 110.03370 * 0.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5714 -0.6888 1.2642 6 7 4.0679 -1.2490 -0.0001 7 6 4.9760 -2.2739 -0.0001 8 1 5.0090 -2.9663 0.8281 9 6 5.8542 -2.4230 -1.0647 10 7 6.0603 -1.4212 -1.8930 11 14 6.7435 -4.0455 -1.3216 12 1 6.3407 -5.0041 -0.2614 13 1 6.3862 -4.6005 -2.6519 14 1 8.2102 -3.8219 -1.2563 15 6 3.5713 -0.6893 -1.2647 16 6 2.0399 -0.7207 -1.2501 17 1 1.6972 -1.7554 -1.2387 18 7 1.5256 -0.0486 -2.4460 19 6 1.3983 -0.7318 -3.6007 20 8 1.7106 -1.9056 -3.6502 21 6 0.8793 -0.0542 -4.8063 22 6 0.6905 -0.6346 -6.0829 23 6 0.2002 0.3575 -6.8625 24 7 0.1049 1.4620 -6.0915 25 6 -0.3786 2.7660 -6.5519 26 6 -1.4626 2.5762 -7.6329 27 6 -1.2030 3.7282 -8.6364 28 6 0.3432 3.8101 -8.6715 29 6 0.7691 3.5506 -7.2116 30 7 0.5037 1.2059 -4.8974 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5145 -0.8896 34 1 1.6573 -0.2208 2.1398 35 1 1.6977 -1.7557 1.2383 36 1 3.9144 0.3407 1.3674 37 1 3.9416 -1.2827 2.0999 38 1 6.6743 -1.5252 -2.6368 39 1 3.9412 -1.2857 -2.0989 40 1 3.9148 0.3400 -1.3680 41 1 1.2767 0.8881 -2.4066 42 1 0.8939 -1.6546 -6.3738 43 1 -0.0645 0.2804 -7.9067 44 1 -0.7832 3.3315 -5.7125 45 1 -1.3469 1.6098 -8.1236 46 1 -2.4570 2.6666 -7.1959 47 1 -1.6312 4.6617 -8.2710 48 1 -1.5993 3.4828 -9.6217 49 1 0.6656 4.8007 -8.9924 50 1 0.7530 3.0445 -9.3303 51 1 0.9208 4.4972 -6.6930 52 1 1.6855 2.9609 -7.1896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966488580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:24 Heat of formation + Delta-G solvation = 31.658074 kcal Electronic energy + Delta-G solvation = -31197.149155 eV Core-core repulsion = 27197.393834 eV Total energy + Delta-G solvation = -3999.755321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.73932 -40.91656 -39.22766 -38.79143 -36.10779 -34.72471 -33.42389 -32.82984 -31.85717 -30.59227 -29.74165 -29.09299 -28.59517 -25.97969 -25.03947 -23.45160 -23.10868 -22.61558 -21.55386 -21.35669 -20.77404 -20.54124 -18.91561 -18.75808 -17.90739 -17.19320 -17.08163 -16.67318 -16.34706 -15.70914 -15.69194 -15.48755 -15.32004 -15.19018 -14.90545 -14.59188 -14.44345 -14.31044 -14.12347 -13.88891 -13.53289 -13.29717 -13.10248 -13.06611 -12.77079 -12.67149 -12.58023 -12.33897 -12.16705 -12.12903 -12.04318 -12.00649 -11.91128 -11.76610 -11.65260 -11.55683 -11.48725 -11.22370 -11.06202 -10.56911 -10.30287 -10.14300 -9.94835 -8.71041 -7.89727 -5.35712 0.52927 1.16508 1.39444 1.44721 1.46328 1.53332 2.17668 2.40994 2.49157 3.19884 3.26878 3.49958 3.57535 3.74925 3.79390 3.82937 3.88104 3.98226 4.10919 4.17101 4.31374 4.38745 4.43158 4.46615 4.48285 4.56007 4.63784 4.65446 4.72513 4.73447 4.76352 4.85346 4.90910 4.96601 5.01132 5.05722 5.10715 5.15822 5.19672 5.20137 5.23889 5.25987 5.33619 5.41911 5.42405 5.44241 5.52345 5.61100 5.76154 5.89925 6.34772 6.50906 6.92185 7.09828 7.24401 7.83435 8.33427 9.15382 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013093 B = 0.002739 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.026559 B =10221.059819 C =11375.442311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.262 4.262 8 H 0.071 0.929 9 C -0.054 4.054 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.261 1.261 13 H -0.299 1.299 14 H -0.285 1.285 15 C 0.181 3.819 16 C 0.140 3.860 17 H 0.053 0.947 18 N -0.694 5.694 19 C 0.593 3.407 20 O -0.578 6.578 21 C -0.042 4.042 22 C -0.205 4.205 23 C 0.003 3.997 24 N -0.266 5.266 25 C 0.133 3.867 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.122 4.122 29 C -0.136 4.136 30 N -0.270 5.270 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.246 0.754 39 H 0.043 0.957 40 H -0.005 1.005 41 H 0.411 0.589 42 H 0.157 0.843 43 H 0.223 0.777 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.088 0.912 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.655 14.789 -12.809 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.392 4.392 8 H 0.089 0.911 9 C -0.249 4.249 10 N -0.578 5.578 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.226 1.226 14 H -0.212 1.212 15 C 0.054 3.946 16 C 0.034 3.966 17 H 0.071 0.929 18 N -0.344 5.344 19 C 0.379 3.621 20 O -0.456 6.456 21 C -0.201 4.201 22 C -0.233 4.233 23 C -0.140 4.140 24 N -0.055 5.055 25 C 0.034 3.966 26 C -0.169 4.169 27 C -0.151 4.151 28 C -0.159 4.159 29 C -0.175 4.175 30 N -0.107 5.107 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.013 0.987 41 H 0.247 0.753 42 H 0.175 0.825 43 H 0.239 0.761 44 H 0.133 0.867 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.089 0.911 51 H 0.107 0.893 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.459 15.051 -12.301 28.221 hybrid contribution 1.311 -1.388 -0.668 2.023 sum -19.149 13.662 -12.970 26.862 Atomic orbital electron populations 1.21755 0.93054 1.01716 1.02579 1.21269 0.96916 0.99276 0.92944 0.90574 1.21968 0.95717 1.00320 0.97350 1.21188 0.93574 0.96207 0.87988 1.44252 1.48158 1.39910 1.00926 1.19548 1.09505 1.03907 1.06274 0.91142 1.25840 0.98738 1.00456 0.99896 1.70197 1.38474 1.30885 1.18216 0.85262 0.77834 0.80299 0.77466 1.18525 1.22590 1.21167 1.20755 0.89630 0.94805 0.89454 1.21582 0.94938 0.95936 0.84157 0.92862 1.45742 1.64531 1.14731 1.09397 1.17381 0.76945 0.85354 0.82449 1.90781 1.52169 1.17751 1.84910 1.21774 1.10133 0.92028 0.96143 1.21961 1.07485 1.01993 0.91898 1.23156 1.04869 0.85361 1.00568 1.46148 1.43094 1.11188 1.05048 1.22774 0.96020 0.78319 0.99508 1.22887 0.97352 1.01633 0.95048 1.22479 0.95039 0.98017 0.99562 1.22385 0.96511 1.02931 0.94114 1.22605 0.96508 1.00443 0.97946 1.73411 1.15937 1.16318 1.05000 0.93616 0.90057 0.92603 0.88318 0.92881 0.96144 0.92259 0.94495 0.93831 0.98681 0.75311 0.82548 0.76104 0.86678 0.89299 0.89033 0.89879 0.89142 0.89994 0.91130 0.89328 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.02 71.98 0.65 -2.82 16 2 C -0.08 -2.81 2.27 -10.77 -0.02 -2.83 16 3 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.11 -3.82 5.36 30.67 0.16 -3.66 16 5 C 0.14 5.76 6.51 86.36 0.56 6.32 16 6 N -0.61 -33.03 3.00 -699.06 -2.09 -35.13 16 7 C -0.26 -15.59 9.59 84.03 0.81 -14.78 16 8 H 0.07 4.03 7.89 -2.91 -0.02 4.01 16 9 C -0.05 -3.30 4.91 84.86 0.42 -2.88 16 10 N -0.93 -60.38 11.19 21.65 0.24 -60.14 16 11 Si 0.96 49.26 29.59 68.60 2.03 51.29 16 12 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 15 C 0.18 9.79 4.88 86.36 0.42 10.21 16 16 C 0.14 6.04 2.06 45.07 0.09 6.14 16 17 H 0.05 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.69 -27.07 4.37 -445.17 -1.94 -29.01 16 19 C 0.59 25.55 7.79 86.75 0.68 26.23 16 20 O -0.58 -30.22 16.59 -3.92 -0.07 -30.29 16 21 C -0.04 -1.50 7.13 42.46 0.30 -1.20 16 22 C -0.21 -6.08 10.81 22.41 0.24 -5.83 16 23 C 0.00 0.07 10.38 83.54 0.87 0.94 16 24 N -0.27 -5.69 3.13 -323.95 -1.02 -6.71 16 25 C 0.13 1.73 3.87 45.72 0.18 1.90 16 26 C -0.13 -0.89 6.36 31.69 0.20 -0.69 16 27 C -0.11 -0.46 6.91 31.91 0.22 -0.24 16 28 C -0.12 -0.86 6.83 31.67 0.22 -0.64 16 29 C -0.14 -1.66 6.60 31.32 0.21 -1.46 16 30 N -0.27 -7.93 11.67 -48.18 -0.56 -8.49 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.39 7.36 -2.39 -0.02 1.38 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 38 H 0.25 15.52 8.31 -92.70 -0.77 14.75 16 39 H 0.04 2.81 6.04 -2.38 -0.01 2.80 16 40 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.41 13.66 8.03 -92.70 -0.74 12.91 16 42 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 43 H 0.22 2.31 6.83 -2.91 -0.02 2.29 16 44 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 0.54 5.86 -2.38 -0.01 0.53 16 46 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 51 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 0.93 7.92 -2.39 -0.02 0.91 16 Total: -1.00 -83.44 407.94 2.96 -80.48 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.17 Total: 23.30 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.20 Total: 14.69 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -5.37 Total: -139.47 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.07 Total: -30.29 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.29 kcal Total: -83.44 2.96 -80.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966488580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.138 kcal (2) G-P(sol) polarization free energy of solvation -83.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds