Wall clock time and date at job start Wed Apr 1 2020 04:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.44780 * 2 1 4 4 C 1.53040 * 109.45935 * 240.02958 * 2 1 3 5 5 C 1.53201 * 109.31072 * 178.61324 * 4 2 1 6 6 N 1.46920 * 108.77186 * 54.63691 * 5 4 2 7 7 C 1.36944 * 120.63004 * 126.36712 * 6 5 4 8 8 H 1.07995 * 120.00010 * 331.83379 * 7 6 5 9 9 C 1.38813 * 119.99747 * 151.82669 * 7 6 5 10 10 N 1.31615 * 120.00210 * 343.08690 * 9 7 6 11 11 Si 1.86801 * 119.99618 * 163.08995 * 9 7 6 12 12 H 1.48495 * 109.47418 * 90.00041 * 11 9 7 13 13 H 1.48501 * 109.47154 * 210.00251 * 11 9 7 14 14 H 1.48500 * 109.47325 * 329.99678 * 11 9 7 15 15 C 1.46924 * 118.74371 * 306.38964 * 6 5 4 16 16 C 1.53036 * 109.45876 * 119.96382 * 2 1 3 17 17 H 1.09004 * 109.52428 * 301.35244 * 16 2 1 18 18 N 1.46500 * 109.50032 * 61.43651 * 16 2 1 19 19 C 1.34777 * 120.00007 * 204.83974 * 18 16 2 20 20 O 1.21280 * 120.00235 * 359.97438 * 19 18 16 21 21 C 1.50702 * 120.00210 * 179.97438 * 19 18 16 22 22 C 1.50693 * 109.47133 * 180.02562 * 21 19 18 23 23 C 1.40059 * 126.09985 * 264.68827 * 22 21 19 24 24 N 1.31030 * 108.25708 * 179.80804 * 23 22 21 25 25 N 1.39649 * 108.12293 * 0.40534 * 24 23 22 26 26 C 1.34748 * 126.10400 * 85.00549 * 22 21 19 27 27 C 1.50869 * 127.76434 * 0.05003 * 26 22 21 28 28 C 1.53435 * 108.17898 * 164.24164 * 27 26 22 29 29 C 1.53157 * 109.18907 * 48.56331 * 28 27 26 30 30 C 1.46590 * 127.55024 * 179.85241 * 25 24 23 31 31 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47370 * 299.97099 * 1 2 3 33 33 H 1.08997 * 109.47143 * 59.96962 * 1 2 3 34 34 H 1.09004 * 109.49735 * 58.66462 * 4 2 1 35 35 H 1.08999 * 109.49879 * 298.56667 * 4 2 1 36 36 H 1.09000 * 109.58393 * 174.42097 * 5 4 2 37 37 H 1.08996 * 109.58536 * 294.70523 * 5 4 2 38 38 H 0.97006 * 119.99439 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.58940 * 173.39949 * 15 6 5 40 40 H 1.09001 * 109.58767 * 293.82551 * 15 6 5 41 41 H 0.96996 * 120.00263 * 24.83019 * 18 16 2 42 42 H 1.08997 * 109.46721 * 300.00148 * 21 19 18 43 43 H 1.09008 * 109.46718 * 59.99649 * 21 19 18 44 44 H 1.08003 * 125.87146 * 359.97438 * 23 22 21 45 45 H 1.09001 * 109.72410 * 283.91686 * 27 26 22 46 46 H 1.09004 * 109.71700 * 44.56742 * 27 26 22 47 47 H 1.08996 * 109.51824 * 168.47716 * 28 27 26 48 48 H 1.09001 * 109.51818 * 288.65259 * 28 27 26 49 49 H 1.09004 * 109.45195 * 50.58719 * 29 28 27 50 50 H 1.09000 * 109.45372 * 170.53609 * 29 28 27 51 51 H 1.09007 * 109.58054 * 42.86019 * 30 25 24 52 52 H 1.09003 * 109.69467 * 282.51958 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0031 -2.9711 -0.8242 9 6 5.8608 -2.4171 1.0599 10 7 6.0659 -1.4134 1.8862 11 14 6.7609 -4.0343 1.3130 12 1 8.0452 -4.0079 0.5681 13 1 7.0319 -4.2287 2.7601 14 1 5.9210 -5.1519 0.8124 15 6 3.5713 -0.6885 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6571 -0.2211 2.1401 18 7 1.5801 -2.1116 1.2343 19 6 1.4547 -2.7930 2.3904 20 8 1.7227 -2.2549 3.4437 21 6 0.9813 -4.2237 2.3743 22 6 0.9278 -4.7510 3.7849 23 6 1.9316 -5.4842 4.4304 24 7 1.5226 -5.7594 5.6444 25 7 0.2450 -5.2190 5.8054 26 6 -0.0965 -4.6064 4.6484 27 6 -1.4082 -3.8983 4.4156 28 6 -2.3875 -4.3311 5.5147 29 6 -1.6993 -4.2115 6.8777 30 6 -0.6073 -5.2800 6.9965 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6572 -0.2208 -2.1398 35 1 1.6978 -1.7557 -1.2382 36 1 3.9417 -1.2846 -2.0983 37 1 3.9142 0.3406 -1.3699 38 1 6.6843 -1.5136 2.6269 39 1 3.9416 -1.2844 2.0985 40 1 3.9142 0.3410 1.3674 41 1 1.3659 -2.5421 0.3920 42 1 -0.0132 -4.2723 1.9307 43 1 1.6716 -4.8282 1.7858 44 1 2.8807 -5.7709 4.0021 45 1 -1.2572 -2.8198 4.4613 46 1 -1.8064 -4.1734 3.4389 47 1 -3.2668 -3.6875 5.4930 48 1 -2.6879 -5.3655 5.3480 49 1 -1.2513 -3.2223 6.9726 50 1 -2.4347 -4.3542 7.6694 51 1 -0.0061 -5.0906 7.8859 52 1 -1.0670 -6.2657 7.0693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966875557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:03 Heat of formation + Delta-G solvation = 25.111262 kcal Electronic energy + Delta-G solvation = -32304.837309 eV Core-core repulsion = 28304.798097 eV Total energy + Delta-G solvation = -4000.039212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.55007 -40.87794 -38.97142 -37.38872 -35.85470 -34.32503 -34.14099 -32.79164 -31.63459 -31.21059 -30.40589 -28.87985 -27.24765 -25.73920 -25.11803 -23.81440 -23.14397 -22.69524 -22.14871 -21.05359 -20.19041 -19.66558 -18.59561 -18.03862 -17.37152 -16.85245 -16.66025 -16.47276 -15.91575 -15.66862 -15.47824 -15.27462 -15.20621 -14.99143 -14.84974 -14.67390 -14.60685 -14.49548 -14.04522 -13.84241 -13.55692 -13.45277 -13.08447 -12.95571 -12.88172 -12.72689 -12.66836 -12.54186 -12.41418 -12.21437 -11.96184 -11.91914 -11.89539 -11.84561 -11.50672 -11.46132 -11.23421 -11.01018 -10.69085 -10.49655 -10.13114 -9.78174 -9.24929 -8.60542 -7.83522 -5.28447 0.92401 1.41335 1.45208 1.52565 1.61534 1.72316 1.97441 2.50832 2.69222 3.33129 3.44708 3.66656 3.73053 3.79947 3.82917 3.94022 3.99395 4.05787 4.18464 4.18951 4.30663 4.31567 4.41851 4.49040 4.58519 4.60733 4.71664 4.73372 4.77252 4.82160 4.85712 4.90971 4.94375 4.99662 5.01094 5.04027 5.09480 5.16428 5.21789 5.26856 5.28434 5.30879 5.33142 5.53397 5.58507 5.64369 5.67283 5.76472 5.88557 6.18199 6.41840 6.74748 6.90664 7.17595 7.62162 7.91642 8.42321 9.21015 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.003984 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.704482 B = 7025.877707 C = 8963.248258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.246 4.246 8 H 0.073 0.927 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.951 3.049 12 H -0.284 1.284 13 H -0.308 1.308 14 H -0.260 1.260 15 C 0.172 3.828 16 C 0.141 3.859 17 H 0.056 0.944 18 N -0.691 5.691 19 C 0.508 3.492 20 O -0.591 6.591 21 C -0.049 4.049 22 C -0.234 4.234 23 C 0.037 3.963 24 N -0.336 5.336 25 N -0.375 5.375 26 C 0.101 3.899 27 C -0.060 4.060 28 C -0.118 4.118 29 C -0.132 4.132 30 C 0.122 3.878 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.008 0.992 38 H 0.242 0.758 39 H 0.045 0.955 40 H -0.013 1.013 41 H 0.407 0.593 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.176 0.824 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.124 0.876 51 H 0.085 0.915 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.294 -5.156 0.508 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.322 5.322 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.246 4.246 10 N -0.583 5.583 11 Si 0.780 3.220 12 H -0.211 1.211 13 H -0.235 1.235 14 H -0.184 1.184 15 C 0.045 3.955 16 C 0.034 3.966 17 H 0.075 0.925 18 N -0.342 5.342 19 C 0.296 3.704 20 O -0.471 6.471 21 C -0.090 4.090 22 C -0.245 4.245 23 C -0.147 4.147 24 N -0.158 5.158 25 N -0.159 5.159 26 C -0.027 4.027 27 C -0.098 4.098 28 C -0.156 4.156 29 C -0.170 4.170 30 C 0.002 3.998 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.005 0.995 41 H 0.244 0.756 42 H 0.149 0.851 43 H 0.123 0.877 44 H 0.193 0.807 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.123 0.877 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.142 0.858 51 H 0.103 0.897 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.780 -5.373 2.616 24.519 hybrid contribution 1.873 -0.227 -0.294 1.910 sum -21.907 -5.601 2.322 22.730 Atomic orbital electron populations 1.21738 0.92736 1.02494 1.02011 1.21255 0.97128 0.98763 0.93506 0.91354 1.21947 0.95258 1.00733 0.97355 1.21158 0.94048 0.95650 0.88194 1.44164 1.48101 1.39379 1.00569 1.19438 1.08910 1.03340 1.05982 0.90970 1.25705 0.98797 0.99689 1.00373 1.70188 1.38477 1.30982 1.18625 0.85513 0.79065 0.81510 0.75921 1.21062 1.23514 1.18401 1.20851 0.90672 0.94395 0.89566 1.21324 0.94607 0.82509 0.98133 0.92547 1.45704 1.66592 1.13139 1.08800 1.21183 0.76768 0.89194 0.83288 1.90653 1.52200 1.71367 1.32914 1.19891 1.04964 0.90705 0.93439 1.19258 0.95824 1.10576 0.98833 1.23989 1.00098 0.98827 0.91827 1.77128 0.95567 1.23834 1.19241 1.48851 1.12385 1.42532 1.12140 1.21230 0.98505 0.96527 0.86469 1.20626 0.87988 0.99000 1.02230 1.21687 0.98159 1.03510 0.92226 1.21999 0.97098 0.97465 1.00441 1.22136 0.90975 1.02345 0.84339 0.91808 0.93374 0.90778 0.89239 0.91394 0.92406 0.97417 0.94918 0.93641 0.99476 0.75636 0.85073 0.87714 0.80665 0.90312 0.86980 0.87745 0.90254 0.92237 0.85772 0.89659 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.05 71.98 0.65 -2.07 16 2 C -0.09 -2.49 2.48 -10.77 -0.03 -2.52 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.11 -3.12 5.20 30.67 0.16 -2.96 16 5 C 0.13 5.14 6.52 86.37 0.56 5.70 16 6 N -0.60 -29.18 2.91 -699.10 -2.03 -31.22 16 7 C -0.25 -13.37 9.58 84.03 0.81 -12.57 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 10 N -0.94 -59.21 11.20 21.65 0.24 -58.97 16 11 Si 0.95 46.97 29.59 68.60 2.03 49.00 16 12 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 13 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 14 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.17 8.69 4.90 86.36 0.42 9.11 16 16 C 0.14 5.33 2.24 45.07 0.10 5.43 16 17 H 0.06 2.32 7.58 -2.38 -0.02 2.30 16 18 N -0.69 -22.99 4.25 -442.16 -1.88 -24.87 16 19 C 0.51 18.56 7.79 87.66 0.68 19.24 16 20 O -0.59 -27.87 15.70 -3.03 -0.05 -27.92 16 21 C -0.05 -1.36 5.98 29.10 0.17 -1.19 16 22 C -0.23 -7.49 4.59 -20.23 -0.09 -7.59 16 23 C 0.04 1.36 11.97 85.25 1.02 2.38 16 24 N -0.34 -12.23 12.62 -56.79 -0.72 -12.94 16 25 N -0.38 -11.00 4.04 -334.09 -1.35 -12.35 16 26 C 0.10 2.82 6.59 41.28 0.27 3.09 16 27 C -0.06 -1.10 6.02 30.05 0.18 -0.91 16 28 C -0.12 -1.37 5.97 30.79 0.18 -1.19 16 29 C -0.13 -1.72 5.93 30.73 0.18 -1.54 16 30 C 0.12 2.32 7.28 86.44 0.63 2.95 16 31 H 0.06 1.18 7.54 -2.39 -0.02 1.16 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 36 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.24 15.21 8.31 -92.70 -0.77 14.44 16 39 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.41 11.19 6.64 -92.71 -0.62 10.57 16 42 H 0.13 2.42 7.89 -2.39 -0.02 2.40 16 43 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 44 H 0.18 6.10 8.06 -2.91 -0.02 6.07 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 46 H 0.11 1.51 7.94 -2.39 -0.02 1.49 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 49 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 50 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 52 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -83.51 404.78 2.86 -80.65 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.29 Total: 25.75 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.33 Total: 12.86 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -5.74 Total: -140.35 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -83.51 2.86 -80.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966875557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.760 kcal (2) G-P(sol) polarization free energy of solvation -83.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds