Wall clock time and date at job start Wed Apr 1 2020 04:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.44972 * 2 1 4 4 C 1.53037 * 109.45831 * 240.03581 * 2 1 3 5 5 C 1.53194 * 109.31234 * 178.61653 * 4 2 1 6 6 N 1.46920 * 108.77674 * 54.63584 * 5 4 2 7 7 C 1.36939 * 120.63242 * 126.36791 * 6 5 4 8 8 H 1.07993 * 119.99814 * 331.83183 * 7 6 5 9 9 C 1.38813 * 119.99717 * 151.82646 * 7 6 5 10 10 N 1.31615 * 120.00210 * 343.09337 * 9 7 6 11 11 Si 1.86801 * 119.99618 * 163.09641 * 9 7 6 12 12 H 1.48501 * 109.47673 * 59.99873 * 11 9 7 13 13 H 1.48498 * 109.47265 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47020 * 299.99920 * 11 9 7 15 15 C 1.46929 * 118.73588 * 306.39054 * 6 5 4 16 16 C 1.53039 * 109.45773 * 119.97201 * 2 1 3 17 17 H 1.09001 * 109.52273 * 301.34920 * 16 2 1 18 18 N 1.46495 * 109.50135 * 61.43114 * 16 2 1 19 19 C 1.34777 * 120.00188 * 204.83330 * 18 16 2 20 20 O 1.21279 * 119.99770 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.46496 * 109.46811 * 180.02562 * 21 19 18 23 23 C 1.35314 * 126.50176 * 264.69120 * 22 21 19 24 24 N 1.30748 * 108.76524 * 179.80144 * 23 22 21 25 25 C 1.33570 * 109.15171 * 0.43136 * 24 23 22 26 26 C 1.35029 * 107.98023 * 359.77305 * 25 24 23 27 27 C 1.50648 * 124.46043 * 179.85368 * 26 25 24 28 28 C 1.53399 * 108.38472 * 343.65460 * 27 26 25 29 29 C 1.53123 * 109.44777 * 49.62077 * 28 27 26 30 30 C 1.50865 * 128.03611 * 179.87915 * 25 24 23 31 31 H 1.09003 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46545 * 299.96571 * 1 2 3 33 33 H 1.09000 * 109.46832 * 59.96124 * 1 2 3 34 34 H 1.09003 * 109.50199 * 58.66278 * 4 2 1 35 35 H 1.09000 * 109.49994 * 298.56853 * 4 2 1 36 36 H 1.09000 * 109.58700 * 174.42467 * 5 4 2 37 37 H 1.09005 * 109.58786 * 294.70332 * 5 4 2 38 38 H 0.97006 * 119.99439 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.58149 * 173.39751 * 15 6 5 40 40 H 1.08995 * 109.58763 * 293.81777 * 15 6 5 41 41 H 0.97004 * 120.00203 * 24.84104 * 18 16 2 42 42 H 1.08997 * 109.47426 * 300.00681 * 21 19 18 43 43 H 1.09000 * 109.46336 * 60.00868 * 21 19 18 44 44 H 1.07998 * 125.61035 * 359.94519 * 23 22 21 45 45 H 1.08995 * 109.68588 * 103.37144 * 27 26 25 46 46 H 1.08992 * 109.68395 * 223.93194 * 27 26 25 47 47 H 1.08996 * 109.47804 * 289.63160 * 28 27 26 48 48 H 1.09000 * 109.48326 * 169.61357 * 28 27 26 49 49 H 1.08996 * 109.46868 * 169.95768 * 29 28 27 50 50 H 1.09008 * 109.46165 * 49.99589 * 29 28 27 51 51 H 1.09003 * 109.67852 * 282.99357 * 30 25 24 52 52 H 1.09001 * 109.67514 * 43.48988 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6886 -1.2643 6 7 4.0679 -1.2489 -0.0001 7 6 4.9757 -2.2741 -0.0001 8 1 5.0030 -2.9711 -0.8246 9 6 5.8609 -2.4173 1.0595 10 7 6.0660 -1.4137 1.8859 11 14 6.7611 -4.0344 1.3124 12 1 7.5846 -4.3354 0.1138 13 1 7.6406 -3.9303 2.5044 14 1 5.7733 -5.1236 1.5204 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2214 2.1401 18 7 1.5801 -2.1117 1.2341 19 6 1.4547 -2.7933 2.3901 20 8 1.7221 -2.2550 3.4435 21 6 0.9812 -4.2239 2.3738 22 7 0.9294 -4.7367 3.7451 23 6 1.8938 -5.4457 4.3763 24 7 1.4880 -5.7215 5.5882 25 6 0.2653 -5.2143 5.7670 26 6 -0.1005 -4.5955 4.6239 27 6 -1.4189 -3.8965 4.4173 28 6 -2.3862 -4.3531 5.5168 29 6 -1.7029 -4.2276 6.8814 30 6 -0.5993 -5.2856 7.0012 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8896 34 1 1.6572 -0.2207 -2.1399 35 1 1.6978 -1.7556 -1.2384 36 1 3.9417 -1.2845 -2.0985 37 1 3.9144 0.3407 -1.3699 38 1 6.6843 -1.5140 2.6266 39 1 3.9417 -1.2847 2.0983 40 1 3.9144 0.3408 1.3673 41 1 1.3660 -2.5422 0.3916 42 1 -0.0132 -4.2725 1.9302 43 1 1.6715 -4.8283 1.7853 44 1 2.8433 -5.7339 3.9500 45 1 -1.2761 -2.8177 4.4791 46 1 -1.8240 -4.1583 3.4400 47 1 -2.6669 -5.3923 5.3453 48 1 -3.2787 -3.7278 5.4985 49 1 -2.4385 -4.3791 7.6713 50 1 -1.2655 -3.2339 6.9785 51 1 -1.0474 -6.2762 7.0788 52 1 0.0062 -5.0866 7.8855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967401992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:24 Heat of formation + Delta-G solvation = 33.110144 kcal Electronic energy + Delta-G solvation = -32393.620581 eV Core-core repulsion = 28393.928226 eV Total energy + Delta-G solvation = -3999.692354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.17405 -39.69011 -37.71755 -36.60822 -34.24180 -33.99570 -32.94188 -31.11927 -30.51200 -29.44073 -28.82881 -27.71541 -26.96138 -24.13941 -23.49587 -22.48428 -21.96490 -21.25443 -21.16791 -20.20660 -18.83264 -18.74691 -17.45465 -16.97282 -16.59442 -15.48959 -15.20013 -15.09662 -14.79296 -14.57100 -14.31646 -13.94419 -13.91130 -13.87658 -13.54071 -13.43917 -13.33358 -13.25070 -12.97727 -12.67524 -12.47309 -12.17830 -12.04599 -11.88911 -11.66764 -11.47702 -11.18714 -10.98928 -10.98014 -10.94267 -10.90885 -10.78143 -10.60146 -10.30772 -10.02287 -9.92801 -9.74366 -9.63219 -9.58332 -9.11053 -8.52882 -8.50489 -7.88806 -6.71594 -5.82898 -3.27001 2.13862 2.78565 2.90779 3.32513 3.33012 3.38546 3.42940 3.64216 4.44075 4.48407 4.65117 4.76301 4.79868 4.85553 4.94125 4.99755 5.10614 5.13744 5.14608 5.25565 5.35222 5.38060 5.44417 5.47493 5.51383 5.59327 5.70259 5.77259 5.81667 5.83445 5.89096 5.90451 5.99880 6.05435 6.18877 6.21633 6.26143 6.26465 6.35204 6.44213 6.55079 6.56931 6.66927 6.78318 6.89227 6.96712 7.26644 7.34911 7.59095 7.73555 7.90625 8.31553 8.40236 8.57790 9.15154 9.79195 10.35255 11.24850 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004015 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.692048 B = 6971.593983 C = 8889.289335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.260 4.260 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.898 3.102 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.285 1.285 15 C 0.161 3.839 16 C 0.128 3.872 17 H 0.075 0.925 18 N -0.693 5.693 19 C 0.496 3.504 20 O -0.525 6.525 21 C 0.084 3.916 22 N -0.430 5.430 23 C 0.190 3.810 24 N -0.488 5.488 25 C -0.004 4.004 26 C -0.015 4.015 27 C -0.041 4.041 28 C -0.110 4.110 29 C -0.119 4.119 30 C -0.029 4.029 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.256 0.744 39 H 0.096 0.904 40 H 0.025 0.975 41 H 0.395 0.605 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.203 0.797 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 -3.540 -0.422 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.167 4.167 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.389 4.389 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.539 5.539 11 Si 0.728 3.272 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.212 1.212 15 C 0.034 3.966 16 C 0.022 3.978 17 H 0.093 0.907 18 N -0.344 5.344 19 C 0.279 3.721 20 O -0.401 6.401 21 C -0.043 4.043 22 N -0.111 5.111 23 C -0.091 4.091 24 N -0.205 5.205 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.079 4.079 28 C -0.148 4.148 29 C -0.157 4.157 30 C -0.068 4.068 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.043 0.957 41 H 0.230 0.770 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.219 0.781 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.532 -3.511 0.929 17.904 hybrid contribution 0.391 -0.482 -1.115 1.276 sum -17.141 -3.994 -0.185 17.601 Atomic orbital electron populations 1.21845 0.95986 1.01233 1.01026 1.21316 0.94575 0.99960 0.95450 0.90391 1.22076 0.99272 0.99311 0.96079 1.20934 0.90658 0.96589 0.90317 1.43965 1.48353 1.39554 0.99065 1.19026 1.10090 1.03102 1.06694 0.91890 1.25032 0.97035 0.97179 0.99841 1.69980 1.37042 1.28989 1.17870 0.86454 0.79500 0.83815 0.77435 1.20907 1.21524 1.21168 1.21183 0.86582 0.97825 0.90990 1.21807 0.99014 0.80043 0.96906 0.90718 1.45745 1.66717 1.14196 1.07786 1.20366 0.79120 0.87672 0.84921 1.90771 1.49448 1.69196 1.30665 1.21703 1.05092 0.95162 0.82376 1.44509 1.14566 1.40563 1.11441 1.24963 0.95765 0.98864 0.89514 1.69943 1.11375 1.24184 1.14993 1.20345 0.93664 1.03792 0.95548 1.20750 0.92961 1.07458 0.91866 1.20046 0.89292 0.99409 0.99186 1.21521 0.97334 1.01685 0.94292 1.21600 0.97447 0.99726 0.96890 1.19862 0.94290 0.98935 0.93673 0.93152 0.93138 0.93081 0.92745 0.92770 0.92806 0.96464 0.93426 0.88580 0.95715 0.76990 0.87007 0.85797 0.78089 0.90459 0.91457 0.91573 0.91236 0.91326 0.91505 0.91147 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.05 37.16 0.34 -1.31 16 2 C -0.09 -1.35 2.48 -90.58 -0.22 -1.57 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.13 -1.84 5.20 -26.61 -0.14 -1.98 16 5 C 0.14 2.66 6.52 -3.71 -0.02 2.64 16 6 N -0.59 -13.48 2.91 -172.32 -0.50 -13.98 16 7 C -0.26 -6.70 9.58 -15.06 -0.14 -6.85 16 8 H 0.06 1.59 7.88 -52.49 -0.41 1.18 16 9 C 0.01 0.24 4.92 -17.43 -0.09 0.16 16 10 N -0.90 -25.99 11.20 55.49 0.62 -25.36 16 11 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.16 3.69 4.90 -3.71 -0.02 3.67 16 16 C 0.13 2.26 2.24 -67.81 -0.15 2.11 16 17 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 18 N -0.69 -10.84 4.25 -53.69 -0.23 -11.07 16 19 C 0.50 8.36 7.86 -10.98 -0.09 8.27 16 20 O -0.53 -11.38 16.09 5.56 0.09 -11.29 16 21 C 0.08 1.07 6.48 -5.19 -0.03 1.04 16 22 N -0.43 -6.59 2.23 -115.26 -0.26 -6.85 16 23 C 0.19 3.21 12.57 -89.92 -1.13 2.08 16 24 N -0.49 -8.83 11.25 -10.74 -0.12 -8.96 16 25 C 0.00 -0.06 6.98 -82.90 -0.58 -0.64 16 26 C -0.02 -0.23 6.73 -81.85 -0.55 -0.78 16 27 C -0.04 -0.47 6.06 -27.70 -0.17 -0.63 16 28 C -0.11 -1.02 5.91 -26.46 -0.16 -1.17 16 29 C -0.12 -1.19 5.90 -26.49 -0.16 -1.34 16 30 C -0.03 -0.36 6.30 -27.62 -0.17 -0.54 16 31 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 36 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.10 2.64 6.06 -51.93 -0.31 2.32 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.40 5.29 6.64 -40.82 -0.27 5.01 16 42 H 0.11 1.03 7.96 -51.93 -0.41 0.62 16 43 H 0.12 1.40 8.13 -51.93 -0.42 0.97 16 44 H 0.20 3.01 8.06 -52.49 -0.42 2.58 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.64 7.99 -51.93 -0.42 0.23 16 47 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.75 8.12 -51.92 -0.42 0.32 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -33.87 404.79 -11.64 -45.51 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.83 Total: 6.33 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -3.49 Total: 3.15 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -0.49 Total: -66.22 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.87 -11.64 -45.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967401992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.625 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds