Wall clock time and date at job start Wed Apr 1 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.44972 * 2 1 4 4 C 1.53037 * 109.45831 * 240.03581 * 2 1 3 5 5 C 1.53194 * 109.31234 * 178.61653 * 4 2 1 6 6 N 1.46920 * 108.77674 * 54.63584 * 5 4 2 7 7 C 1.36939 * 120.63242 * 126.36791 * 6 5 4 8 8 H 1.07993 * 119.99814 * 331.83183 * 7 6 5 9 9 C 1.38813 * 119.99717 * 151.82646 * 7 6 5 10 10 N 1.31615 * 120.00210 * 343.09337 * 9 7 6 11 11 Si 1.86801 * 119.99618 * 163.09641 * 9 7 6 12 12 H 1.48501 * 109.47673 * 59.99873 * 11 9 7 13 13 H 1.48498 * 109.47265 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47020 * 299.99920 * 11 9 7 15 15 C 1.46929 * 118.73588 * 306.39054 * 6 5 4 16 16 C 1.53039 * 109.45773 * 119.97201 * 2 1 3 17 17 H 1.09001 * 109.52273 * 301.34920 * 16 2 1 18 18 N 1.46495 * 109.50135 * 61.43114 * 16 2 1 19 19 C 1.34777 * 120.00188 * 204.83330 * 18 16 2 20 20 O 1.21279 * 119.99770 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.46496 * 109.46811 * 180.02562 * 21 19 18 23 23 C 1.35314 * 126.50176 * 264.69120 * 22 21 19 24 24 N 1.30748 * 108.76524 * 179.80144 * 23 22 21 25 25 C 1.33570 * 109.15171 * 0.43136 * 24 23 22 26 26 C 1.35029 * 107.98023 * 359.77305 * 25 24 23 27 27 C 1.50648 * 124.46043 * 179.85368 * 26 25 24 28 28 C 1.53399 * 108.38472 * 343.65460 * 27 26 25 29 29 C 1.53123 * 109.44777 * 49.62077 * 28 27 26 30 30 C 1.50865 * 128.03611 * 179.87915 * 25 24 23 31 31 H 1.09003 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46545 * 299.96571 * 1 2 3 33 33 H 1.09000 * 109.46832 * 59.96124 * 1 2 3 34 34 H 1.09003 * 109.50199 * 58.66278 * 4 2 1 35 35 H 1.09000 * 109.49994 * 298.56853 * 4 2 1 36 36 H 1.09000 * 109.58700 * 174.42467 * 5 4 2 37 37 H 1.09005 * 109.58786 * 294.70332 * 5 4 2 38 38 H 0.97006 * 119.99439 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.58149 * 173.39751 * 15 6 5 40 40 H 1.08995 * 109.58763 * 293.81777 * 15 6 5 41 41 H 0.97004 * 120.00203 * 24.84104 * 18 16 2 42 42 H 1.08997 * 109.47426 * 300.00681 * 21 19 18 43 43 H 1.09000 * 109.46336 * 60.00868 * 21 19 18 44 44 H 1.07998 * 125.61035 * 359.94519 * 23 22 21 45 45 H 1.08995 * 109.68588 * 103.37144 * 27 26 25 46 46 H 1.08992 * 109.68395 * 223.93194 * 27 26 25 47 47 H 1.08996 * 109.47804 * 289.63160 * 28 27 26 48 48 H 1.09000 * 109.48326 * 169.61357 * 28 27 26 49 49 H 1.08996 * 109.46868 * 169.95768 * 29 28 27 50 50 H 1.09008 * 109.46165 * 49.99589 * 29 28 27 51 51 H 1.09003 * 109.67852 * 282.99357 * 30 25 24 52 52 H 1.09001 * 109.67514 * 43.48988 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6886 -1.2643 6 7 4.0679 -1.2489 -0.0001 7 6 4.9757 -2.2741 -0.0001 8 1 5.0030 -2.9711 -0.8246 9 6 5.8609 -2.4173 1.0595 10 7 6.0660 -1.4137 1.8859 11 14 6.7611 -4.0344 1.3124 12 1 7.5846 -4.3354 0.1138 13 1 7.6406 -3.9303 2.5044 14 1 5.7733 -5.1236 1.5204 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2214 2.1401 18 7 1.5801 -2.1117 1.2341 19 6 1.4547 -2.7933 2.3901 20 8 1.7221 -2.2550 3.4435 21 6 0.9812 -4.2239 2.3738 22 7 0.9294 -4.7367 3.7451 23 6 1.8938 -5.4457 4.3763 24 7 1.4880 -5.7215 5.5882 25 6 0.2653 -5.2143 5.7670 26 6 -0.1005 -4.5955 4.6239 27 6 -1.4189 -3.8965 4.4173 28 6 -2.3862 -4.3531 5.5168 29 6 -1.7029 -4.2276 6.8814 30 6 -0.5993 -5.2856 7.0012 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8896 34 1 1.6572 -0.2207 -2.1399 35 1 1.6978 -1.7556 -1.2384 36 1 3.9417 -1.2845 -2.0985 37 1 3.9144 0.3407 -1.3699 38 1 6.6843 -1.5140 2.6266 39 1 3.9417 -1.2847 2.0983 40 1 3.9144 0.3408 1.3673 41 1 1.3660 -2.5422 0.3916 42 1 -0.0132 -4.2725 1.9302 43 1 1.6715 -4.8283 1.7853 44 1 2.8433 -5.7339 3.9500 45 1 -1.2761 -2.8177 4.4791 46 1 -1.8240 -4.1583 3.4400 47 1 -2.6669 -5.3923 5.3453 48 1 -3.2787 -3.7278 5.4985 49 1 -2.4385 -4.3791 7.6713 50 1 -1.2655 -3.2339 6.9785 51 1 -1.0474 -6.2762 7.0788 52 1 0.0062 -5.0866 7.8855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967401992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:22 Heat of formation + Delta-G solvation = 13.529227 kcal Electronic energy + Delta-G solvation = -32394.469673 eV Core-core repulsion = 28393.928226 eV Total energy + Delta-G solvation = -4000.541447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.32383 -41.09526 -39.16578 -37.50666 -35.95325 -35.18624 -34.37293 -32.85444 -31.58191 -30.82890 -29.85553 -29.07012 -28.31968 -25.81739 -24.48057 -23.95134 -22.93505 -22.76549 -22.45643 -21.39011 -20.31241 -19.79192 -18.77930 -18.57608 -17.91862 -16.92481 -16.66044 -16.38930 -16.13485 -15.74643 -15.65902 -15.45247 -15.15013 -14.89187 -14.79654 -14.73492 -14.64812 -14.35931 -14.13293 -14.08823 -13.58966 -13.44945 -13.26920 -13.12388 -13.01801 -12.81305 -12.71155 -12.59366 -12.49026 -12.28462 -11.96044 -11.82704 -11.76905 -11.73189 -11.56431 -11.35820 -11.20847 -11.07602 -10.79263 -10.56857 -10.37324 -9.99356 -9.03307 -8.66143 -7.87929 -5.33358 0.95063 1.41057 1.42066 1.49996 1.58872 1.70200 2.11196 2.38618 2.47670 3.28425 3.50296 3.64362 3.67744 3.75030 3.77669 3.90011 3.98711 3.99033 4.00528 4.08296 4.12936 4.23718 4.35955 4.51755 4.57689 4.64468 4.67006 4.71096 4.71343 4.81029 4.81938 4.89754 4.96653 5.03599 5.09436 5.10713 5.17438 5.18017 5.25524 5.26390 5.27634 5.45954 5.47240 5.49171 5.51890 5.59282 5.68942 5.69416 5.87959 6.17745 6.36893 6.61864 7.11451 7.12851 7.29947 7.86595 8.37645 9.16649 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004015 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.692048 B = 6971.593983 C = 8889.289335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.599 5.599 7 C -0.249 4.249 8 H 0.075 0.925 9 C -0.050 4.050 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.309 1.309 14 H -0.272 1.272 15 C 0.172 3.828 16 C 0.142 3.858 17 H 0.058 0.942 18 N -0.680 5.680 19 C 0.492 3.508 20 O -0.581 6.581 21 C 0.088 3.912 22 N -0.431 5.431 23 C 0.164 3.836 24 N -0.522 5.522 25 C -0.035 4.035 26 C -0.015 4.015 27 C -0.041 4.041 28 C -0.105 4.105 29 C -0.115 4.115 30 C -0.031 4.031 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.007 0.993 38 H 0.242 0.758 39 H 0.046 0.954 40 H -0.011 1.011 41 H 0.411 0.589 42 H 0.160 0.840 43 H 0.144 0.856 44 H 0.209 0.791 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.048 0.952 51 H 0.083 0.917 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.288 -4.647 -3.147 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.322 5.322 7 C -0.380 4.380 8 H 0.092 0.908 9 C -0.245 4.245 10 N -0.582 5.582 11 Si 0.781 3.219 12 H -0.197 1.197 13 H -0.236 1.236 14 H -0.197 1.197 15 C 0.045 3.955 16 C 0.035 3.965 17 H 0.076 0.924 18 N -0.332 5.332 19 C 0.278 3.722 20 O -0.461 6.461 21 C -0.037 4.037 22 N -0.112 5.112 23 C -0.117 4.117 24 N -0.241 5.241 25 C -0.164 4.164 26 C -0.131 4.131 27 C -0.079 4.079 28 C -0.143 4.143 29 C -0.153 4.153 30 C -0.069 4.069 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.007 0.993 41 H 0.249 0.751 42 H 0.178 0.822 43 H 0.161 0.839 44 H 0.225 0.775 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.094 0.906 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.067 0.933 51 H 0.102 0.898 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.514 -4.639 -1.884 22.089 hybrid contribution 1.680 -0.057 -0.302 1.708 sum -19.834 -4.696 -2.186 20.499 Atomic orbital electron populations 1.21755 0.92710 1.02529 1.02107 1.21267 0.97109 0.98892 0.93375 0.91200 1.21948 0.95230 1.00782 0.97305 1.21169 0.94028 0.95707 0.88218 1.44172 1.48160 1.39379 1.00486 1.19426 1.09099 1.03394 1.06036 0.90757 1.25731 0.98697 0.99687 1.00395 1.70179 1.38425 1.31023 1.18600 0.85564 0.78549 0.81027 0.76734 1.19675 1.23592 1.19727 1.20839 0.90353 0.94642 0.89670 1.21389 0.94862 0.81767 0.98436 0.92400 1.45581 1.65795 1.13376 1.08424 1.21119 0.77892 0.89089 0.84135 1.90760 1.51819 1.70793 1.32720 1.21934 1.08123 0.91999 0.81686 1.44664 1.14210 1.40007 1.12362 1.25170 0.96621 1.00081 0.89866 1.69891 1.12835 1.25454 1.15905 1.21039 0.93549 1.04370 0.97421 1.21418 0.93959 1.06343 0.91350 1.20227 0.87923 0.98172 1.01589 1.21544 0.97389 1.02782 0.92558 1.21604 0.97169 0.97743 0.98776 1.19997 0.94496 1.00594 0.91805 0.91728 0.93458 0.90684 0.89178 0.91180 0.92286 0.97469 0.94856 0.93569 0.99290 0.75104 0.82231 0.83854 0.77495 0.91692 0.88750 0.90606 0.88589 0.88582 0.93293 0.89825 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.05 71.98 0.65 -1.84 16 2 C -0.09 -2.29 2.48 -10.77 -0.03 -2.31 16 3 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.11 -2.82 5.20 30.67 0.16 -2.66 16 5 C 0.13 4.80 6.52 86.36 0.56 5.36 16 6 N -0.60 -27.63 2.91 -699.09 -2.03 -29.66 16 7 C -0.25 -12.88 9.58 84.03 0.81 -12.08 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 9 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 10 N -0.94 -57.44 11.20 21.65 0.24 -57.20 16 11 Si 0.95 45.07 29.59 68.60 2.03 47.09 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 C 0.17 8.25 4.90 86.36 0.42 8.67 16 16 C 0.14 4.99 2.24 45.07 0.10 5.09 16 17 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 18 N -0.68 -20.10 4.25 -442.17 -1.88 -21.98 16 19 C 0.49 16.18 7.86 87.66 0.69 16.87 16 20 O -0.58 -26.01 16.09 -3.03 -0.05 -26.06 16 21 C 0.09 2.05 6.48 85.63 0.56 2.60 16 22 N -0.43 -12.89 2.23 -518.57 -1.16 -14.05 16 23 C 0.16 5.65 12.57 180.10 2.26 7.92 16 24 N -0.52 -19.59 11.25 -187.90 -2.11 -21.70 16 25 C -0.03 -1.12 6.98 41.61 0.29 -0.83 16 26 C -0.01 -0.43 6.73 41.14 0.28 -0.16 16 27 C -0.04 -0.83 6.06 29.97 0.18 -0.64 16 28 C -0.11 -1.60 5.91 30.77 0.18 -1.42 16 29 C -0.12 -2.10 5.90 30.75 0.18 -1.92 16 30 C -0.03 -0.75 6.30 30.02 0.19 -0.56 16 31 H 0.06 1.04 7.54 -2.39 -0.02 1.02 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.56 6.40 -2.39 -0.02 1.54 16 36 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 37 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 38 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 39 H 0.05 2.69 6.06 -2.38 -0.01 2.68 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.41 9.46 6.64 -92.71 -0.62 8.85 16 42 H 0.16 2.16 7.96 -2.39 -0.02 2.15 16 43 H 0.14 2.81 8.13 -2.39 -0.02 2.79 16 44 H 0.21 6.46 8.06 -2.91 -0.02 6.44 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 46 H 0.09 1.39 7.99 -2.39 -0.02 1.37 16 47 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 48 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.05 1.07 8.12 -2.38 -0.02 1.05 16 51 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -81.43 404.79 3.23 -78.20 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.29 Total: 25.62 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 7.90 Total: 19.75 kcal Atomic # 7 Polarization: -137.65 SS G_CDS: -6.94 Total: -144.60 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -81.43 3.23 -78.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967401992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.726 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds