Wall clock time and date at job start Wed Apr 1 2020 04:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.45993 * 2 1 4 4 C 1.53081 * 109.43862 * 119.82022 * 2 1 3 5 5 C 1.53190 * 109.29209 * 181.23705 * 4 2 1 6 6 N 1.46921 * 108.89311 * 305.57883 * 5 4 2 7 7 C 1.36940 * 120.63187 * 233.51481 * 6 5 4 8 8 H 1.08001 * 120.00319 * 152.61971 * 7 6 5 9 9 C 1.38813 * 119.99903 * 332.62203 * 7 6 5 10 10 N 1.31624 * 120.00070 * 159.34992 * 9 7 6 11 11 Si 1.86800 * 120.00077 * 339.35529 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.87851 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.88430 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.87654 * 11 9 7 15 15 C 1.46923 * 118.74178 * 53.54201 * 6 5 4 16 16 C 1.53035 * 109.46026 * 240.02467 * 2 1 3 17 17 H 1.08999 * 109.49849 * 298.57711 * 16 2 1 18 18 N 1.46496 * 109.52228 * 58.66359 * 16 2 1 19 19 C 1.34782 * 119.99541 * 204.85494 * 18 16 2 20 20 O 1.21548 * 120.00442 * 359.97438 * 19 18 16 21 21 C 1.47831 * 119.99607 * 180.02562 * 19 18 16 22 22 C 1.39944 * 120.94316 * 359.71595 * 21 19 18 23 23 N 1.32148 * 118.92732 * 179.72109 * 22 21 19 24 24 C 1.31868 * 120.96437 * 0.56898 * 23 22 21 25 25 C 1.50706 * 118.95337 * 179.68072 * 24 23 22 26 26 C 1.52992 * 109.47136 * 240.02201 * 25 24 23 27 27 C 1.53001 * 109.46985 * 0.02594 * 25 24 23 28 28 C 1.52998 * 109.46878 * 120.02127 * 25 24 23 29 29 N 1.31871 * 122.09792 * 359.69990 * 24 23 22 30 30 C 1.32149 * 120.96428 * 0.02562 * 29 24 23 31 31 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47403 * 299.97614 * 1 2 3 33 33 H 1.09000 * 109.47328 * 59.97492 * 1 2 3 34 34 H 1.08992 * 109.38800 * 61.36124 * 4 2 1 35 35 H 1.09002 * 109.61927 * 301.25402 * 4 2 1 36 36 H 1.08999 * 109.58729 * 185.71870 * 5 4 2 37 37 H 1.09004 * 109.58886 * 65.43758 * 5 4 2 38 38 H 0.97001 * 119.99914 * 180.02562 * 10 9 7 39 39 H 1.09004 * 109.59094 * 66.17180 * 15 6 5 40 40 H 1.08996 * 109.58998 * 186.60934 * 15 6 5 41 41 H 0.96997 * 120.00610 * 24.85488 * 18 16 2 42 42 H 1.08004 * 120.53547 * 359.97438 * 22 21 19 43 43 H 1.09000 * 109.47227 * 60.00259 * 26 25 24 44 44 H 1.09000 * 109.47144 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.47238 * 300.00128 * 26 25 24 46 46 H 1.09001 * 109.47707 * 59.99611 * 27 25 24 47 47 H 1.09000 * 109.46978 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.46781 * 299.99898 * 27 25 24 49 49 H 1.08996 * 109.47391 * 60.00534 * 28 25 24 50 50 H 1.08998 * 109.47045 * 180.02562 * 28 25 24 51 51 H 1.09004 * 109.47408 * 300.00250 * 28 25 24 52 52 H 1.07997 * 120.53775 * 180.02562 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0394 -0.7179 1.2524 5 6 3.5710 -0.6889 1.2646 6 7 4.0675 -1.2493 0.0005 7 6 4.9759 -2.2740 0.0007 8 1 5.0123 -2.9636 -0.8297 9 6 5.8501 -2.4265 1.0682 10 7 6.4266 -3.5895 1.2858 11 14 6.2080 -0.9810 2.1960 12 1 5.2784 -1.0142 3.3535 13 1 7.6083 -1.0680 2.6829 14 1 6.0221 0.2884 1.4480 15 6 3.5714 -0.6890 -1.2638 16 6 2.0398 -0.7209 -1.2499 17 1 1.6976 -1.7557 -1.2381 18 7 1.5259 -0.0495 -2.4462 19 6 1.4005 -0.7330 -3.6011 20 8 1.7143 -1.9062 -3.6502 21 6 0.8824 -0.0553 -4.8085 22 6 0.5108 1.2935 -4.7730 23 7 0.0578 1.8609 -5.8771 24 6 -0.0564 1.1725 -6.9961 25 6 -0.5851 1.8632 -8.2268 26 6 -1.8594 1.1601 -8.6985 27 6 -0.9006 3.3234 -7.8963 28 6 0.4683 1.8073 -9.3351 29 7 0.2769 -0.1011 -7.0724 30 6 0.7438 -0.7460 -6.0177 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5135 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6952 -1.7519 1.2420 35 1 1.6589 -0.2161 2.1421 36 1 3.9411 -1.2848 2.0989 37 1 3.9163 0.3398 1.3689 38 1 7.0372 -3.6961 2.0320 39 1 3.9145 0.3405 -1.3670 40 1 3.9416 -1.2851 -2.0979 41 1 1.2758 0.8869 -2.4072 42 1 0.5967 1.8625 -3.8590 43 1 -2.6098 1.2000 -7.9089 44 1 -2.2415 1.6594 -9.5889 45 1 -1.6346 0.1199 -8.9339 46 1 0.0073 3.8243 -7.5603 47 1 -1.2834 3.8228 -8.7864 48 1 -1.6510 3.3632 -7.1067 49 1 0.6931 0.7671 -9.5706 50 1 0.0861 2.3072 -10.2251 51 1 1.3762 2.3082 -8.9990 52 1 1.0151 -1.7890 -6.0881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968699343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:47 Heat of formation + Delta-G solvation = 24.872086 kcal Electronic energy + Delta-G solvation = -30909.110168 eV Core-core repulsion = 26909.060585 eV Total energy + Delta-G solvation = -4000.049583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.68057 -39.85105 -38.01946 -36.95892 -34.87173 -34.15670 -33.23802 -31.90581 -31.43512 -29.35591 -27.73477 -27.66923 -27.64499 -25.57296 -24.66577 -23.88752 -22.85663 -21.36333 -20.99607 -20.15469 -19.83773 -18.11251 -17.77704 -16.82536 -16.70421 -15.74756 -15.64013 -15.21673 -14.92111 -14.82699 -14.54450 -14.22710 -14.11868 -13.95031 -13.81426 -13.75555 -13.49366 -13.28334 -12.72391 -12.59971 -12.56051 -12.25749 -12.18767 -12.11360 -11.98742 -11.73782 -11.44224 -11.39185 -11.34964 -11.27449 -11.17602 -11.01625 -10.94068 -10.71250 -10.17791 -10.06400 -9.90152 -9.81177 -9.72782 -9.57474 -9.47100 -9.10440 -8.56331 -7.00185 -5.94238 -3.31309 0.15253 0.72245 2.73128 3.00849 3.29982 3.36616 3.46993 3.49390 3.52472 3.71744 4.13671 4.43204 4.51375 4.52082 4.58108 4.59212 4.67270 4.89199 4.98780 5.00399 5.08073 5.17679 5.26249 5.27813 5.40876 5.42358 5.45282 5.51118 5.56530 5.60460 5.67668 5.73847 5.75214 5.76775 5.86750 5.91407 5.96480 6.00293 6.04650 6.05951 6.19430 6.29994 6.40782 6.42341 6.53278 6.57727 6.61301 6.70132 6.88763 7.44887 7.68898 7.94923 8.15352 8.34183 8.93623 9.71326 10.06408 11.21587 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.002309 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.943156 B =12123.718012 C =12607.869898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.600 5.600 7 C -0.259 4.259 8 H 0.087 0.913 9 C 0.024 3.976 10 N -0.906 5.906 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.132 3.868 17 H 0.094 0.906 18 N -0.713 5.713 19 C 0.564 3.436 20 O -0.520 6.520 21 C -0.240 4.240 22 C 0.182 3.818 23 N -0.515 5.515 24 C 0.343 3.657 25 C -0.003 4.003 26 C -0.136 4.136 27 C -0.129 4.129 28 C -0.137 4.137 29 N -0.514 5.514 30 C 0.209 3.791 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.022 0.978 40 H 0.068 0.932 41 H 0.393 0.607 42 H 0.170 0.830 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.055 0.945 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 14.721 -15.568 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.388 4.388 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.549 5.549 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.197 1.197 15 C 0.016 3.984 16 C 0.027 3.973 17 H 0.112 0.888 18 N -0.364 5.364 19 C 0.349 3.651 20 O -0.396 6.396 21 C -0.248 4.248 22 C 0.015 3.985 23 N -0.228 5.228 24 C 0.076 3.924 25 C -0.005 4.005 26 C -0.194 4.194 27 C -0.187 4.187 28 C -0.195 4.195 29 N -0.227 5.227 30 C 0.042 3.958 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.227 0.773 42 H 0.187 0.813 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.924 14.197 -16.311 28.087 hybrid contribution 0.594 0.789 1.729 1.991 sum -17.329 14.987 -14.583 27.158 Atomic orbital electron populations 1.21847 0.95459 1.01943 1.00941 1.21316 0.95082 0.99638 0.95110 0.91260 1.22078 0.98296 1.00741 0.95470 1.21408 0.91721 0.97013 0.90284 1.44276 1.48645 1.40485 0.98985 1.18943 1.09620 1.02619 1.07569 0.89542 1.25272 0.97419 0.96671 0.98167 1.69844 1.32546 1.21960 1.30582 0.86954 0.76319 0.84817 0.80553 1.21605 1.23162 1.19656 1.21220 0.90163 0.96854 0.90120 1.21804 0.96502 0.97424 0.81583 0.88786 1.45980 1.65889 1.14152 1.10389 1.17728 0.78472 0.86465 0.82469 1.90856 1.49096 1.15429 1.84244 1.21899 1.07646 0.97311 0.97953 1.23472 0.87571 0.90816 0.96685 1.68291 1.15793 1.39301 0.99372 1.23367 0.88953 0.86866 0.93193 1.19468 0.96287 0.95354 0.89351 1.21850 0.95099 1.01249 1.01234 1.21730 1.02585 0.93000 1.01346 1.21856 0.97541 1.03183 0.96915 1.68316 1.13111 1.09993 1.31270 1.23558 0.85966 1.00535 0.85718 0.92594 0.92732 0.93281 0.91320 0.92097 0.90686 0.95651 0.92753 0.95965 0.91320 0.77253 0.81256 0.92696 0.91393 0.91275 0.91864 0.92223 0.91917 0.91256 0.91393 0.92630 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.02 37.16 0.34 -1.26 16 2 C -0.09 -1.27 2.27 -90.56 -0.21 -1.47 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -2.07 5.37 -26.59 -0.14 -2.21 16 5 C 0.12 2.54 4.20 -3.71 -0.02 2.53 16 6 N -0.60 -14.15 2.77 -172.32 -0.48 -14.63 16 7 C -0.26 -7.33 10.03 -15.06 -0.15 -7.48 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 10 N -0.91 -27.98 13.97 55.49 0.78 -27.21 16 11 Si 0.88 22.23 24.34 -169.99 -4.14 18.09 16 12 H -0.29 -6.94 6.62 56.52 0.37 -6.56 16 13 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 14 H -0.27 -6.68 6.64 56.52 0.38 -6.31 16 15 C 0.14 2.84 6.09 -3.71 -0.02 2.82 16 16 C 0.13 2.09 2.07 -67.81 -0.14 1.95 16 17 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 18 N -0.71 -8.80 4.33 -54.64 -0.24 -9.04 16 19 C 0.56 7.82 7.75 -12.33 -0.10 7.72 16 20 O -0.52 -9.42 16.11 5.32 0.09 -9.34 16 21 C -0.24 -2.72 5.91 -104.69 -0.62 -3.34 16 22 C 0.18 1.73 10.81 -16.78 -0.18 1.54 16 23 N -0.51 -5.31 8.98 -10.39 -0.09 -5.40 16 24 C 0.34 3.57 6.25 -157.06 -0.98 2.59 16 25 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 26 C -0.14 -0.95 8.37 37.15 0.31 -0.63 16 27 C -0.13 -0.90 7.66 37.16 0.28 -0.61 16 28 C -0.14 -0.98 8.37 37.16 0.31 -0.67 16 29 N -0.51 -5.78 9.77 -10.39 -0.10 -5.88 16 30 C 0.21 2.40 10.88 -16.77 -0.18 2.22 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.05 0.46 7.36 -51.93 -0.38 0.08 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.75 4.50 -51.93 -0.23 1.51 16 37 H 0.03 0.52 7.07 -51.93 -0.37 0.16 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.50 7.93 -51.93 -0.41 1.08 16 41 H 0.39 3.51 6.44 -40.82 -0.26 3.25 16 42 H 0.17 1.07 6.54 -52.48 -0.34 0.73 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 46 H 0.06 0.48 8.04 -51.93 -0.42 0.07 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 49 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.18 1.97 7.74 -52.49 -0.41 1.57 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -33.44 405.00 -8.54 -41.98 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.73 Total: 1.20 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.73 Total: 4.12 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.13 Total: -62.16 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.44 -8.54 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.854 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds