Wall clock time and date at job start Wed Apr 1 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.45993 * 2 1 4 4 C 1.53081 * 109.43862 * 119.82022 * 2 1 3 5 5 C 1.53190 * 109.29209 * 181.23705 * 4 2 1 6 6 N 1.46921 * 108.89311 * 305.57883 * 5 4 2 7 7 C 1.36940 * 120.63187 * 233.51481 * 6 5 4 8 8 H 1.08001 * 120.00319 * 152.61971 * 7 6 5 9 9 C 1.38813 * 119.99903 * 332.62203 * 7 6 5 10 10 N 1.31624 * 120.00070 * 159.34992 * 9 7 6 11 11 Si 1.86800 * 120.00077 * 339.35529 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.87851 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.88430 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.87654 * 11 9 7 15 15 C 1.46923 * 118.74178 * 53.54201 * 6 5 4 16 16 C 1.53035 * 109.46026 * 240.02467 * 2 1 3 17 17 H 1.08999 * 109.49849 * 298.57711 * 16 2 1 18 18 N 1.46496 * 109.52228 * 58.66359 * 16 2 1 19 19 C 1.34782 * 119.99541 * 204.85494 * 18 16 2 20 20 O 1.21548 * 120.00442 * 359.97438 * 19 18 16 21 21 C 1.47831 * 119.99607 * 180.02562 * 19 18 16 22 22 C 1.39944 * 120.94316 * 359.71595 * 21 19 18 23 23 N 1.32148 * 118.92732 * 179.72109 * 22 21 19 24 24 C 1.31868 * 120.96437 * 0.56898 * 23 22 21 25 25 C 1.50706 * 118.95337 * 179.68072 * 24 23 22 26 26 C 1.52992 * 109.47136 * 240.02201 * 25 24 23 27 27 C 1.53001 * 109.46985 * 0.02594 * 25 24 23 28 28 C 1.52998 * 109.46878 * 120.02127 * 25 24 23 29 29 N 1.31871 * 122.09792 * 359.69990 * 24 23 22 30 30 C 1.32149 * 120.96428 * 0.02562 * 29 24 23 31 31 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47403 * 299.97614 * 1 2 3 33 33 H 1.09000 * 109.47328 * 59.97492 * 1 2 3 34 34 H 1.08992 * 109.38800 * 61.36124 * 4 2 1 35 35 H 1.09002 * 109.61927 * 301.25402 * 4 2 1 36 36 H 1.08999 * 109.58729 * 185.71870 * 5 4 2 37 37 H 1.09004 * 109.58886 * 65.43758 * 5 4 2 38 38 H 0.97001 * 119.99914 * 180.02562 * 10 9 7 39 39 H 1.09004 * 109.59094 * 66.17180 * 15 6 5 40 40 H 1.08996 * 109.58998 * 186.60934 * 15 6 5 41 41 H 0.96997 * 120.00610 * 24.85488 * 18 16 2 42 42 H 1.08004 * 120.53547 * 359.97438 * 22 21 19 43 43 H 1.09000 * 109.47227 * 60.00259 * 26 25 24 44 44 H 1.09000 * 109.47144 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.47238 * 300.00128 * 26 25 24 46 46 H 1.09001 * 109.47707 * 59.99611 * 27 25 24 47 47 H 1.09000 * 109.46978 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.46781 * 299.99898 * 27 25 24 49 49 H 1.08996 * 109.47391 * 60.00534 * 28 25 24 50 50 H 1.08998 * 109.47045 * 180.02562 * 28 25 24 51 51 H 1.09004 * 109.47408 * 300.00250 * 28 25 24 52 52 H 1.07997 * 120.53775 * 180.02562 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0394 -0.7179 1.2524 5 6 3.5710 -0.6889 1.2646 6 7 4.0675 -1.2493 0.0005 7 6 4.9759 -2.2740 0.0007 8 1 5.0123 -2.9636 -0.8297 9 6 5.8501 -2.4265 1.0682 10 7 6.4266 -3.5895 1.2858 11 14 6.2080 -0.9810 2.1960 12 1 5.2784 -1.0142 3.3535 13 1 7.6083 -1.0680 2.6829 14 1 6.0221 0.2884 1.4480 15 6 3.5714 -0.6890 -1.2638 16 6 2.0398 -0.7209 -1.2499 17 1 1.6976 -1.7557 -1.2381 18 7 1.5259 -0.0495 -2.4462 19 6 1.4005 -0.7330 -3.6011 20 8 1.7143 -1.9062 -3.6502 21 6 0.8824 -0.0553 -4.8085 22 6 0.5108 1.2935 -4.7730 23 7 0.0578 1.8609 -5.8771 24 6 -0.0564 1.1725 -6.9961 25 6 -0.5851 1.8632 -8.2268 26 6 -1.8594 1.1601 -8.6985 27 6 -0.9006 3.3234 -7.8963 28 6 0.4683 1.8073 -9.3351 29 7 0.2769 -0.1011 -7.0724 30 6 0.7438 -0.7460 -6.0177 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5135 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6952 -1.7519 1.2420 35 1 1.6589 -0.2161 2.1421 36 1 3.9411 -1.2848 2.0989 37 1 3.9163 0.3398 1.3689 38 1 7.0372 -3.6961 2.0320 39 1 3.9145 0.3405 -1.3670 40 1 3.9416 -1.2851 -2.0979 41 1 1.2758 0.8869 -2.4072 42 1 0.5967 1.8625 -3.8590 43 1 -2.6098 1.2000 -7.9089 44 1 -2.2415 1.6594 -9.5889 45 1 -1.6346 0.1199 -8.9339 46 1 0.0073 3.8243 -7.5603 47 1 -1.2834 3.8228 -8.7864 48 1 -1.6510 3.3632 -7.1067 49 1 0.6931 0.7671 -9.5706 50 1 0.0861 2.3072 -10.2251 51 1 1.3762 2.3082 -8.9990 52 1 1.0151 -1.7890 -6.0881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968699343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:45 Heat of formation + Delta-G solvation = 2.408639 kcal Electronic energy + Delta-G solvation = -30910.084256 eV Core-core repulsion = 26909.060585 eV Total energy + Delta-G solvation = -4001.023671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.53362 -41.04586 -39.38412 -37.65677 -36.38087 -35.12949 -34.54499 -33.41863 -32.86048 -30.71488 -29.19414 -28.25814 -28.19369 -26.58719 -25.65114 -25.37153 -24.20102 -22.93142 -22.07322 -21.25843 -20.90575 -19.13215 -18.81919 -18.64311 -17.46563 -17.27456 -16.86331 -16.61203 -16.11096 -15.72818 -15.57817 -15.49176 -15.26363 -15.12652 -14.94874 -14.69979 -14.59311 -14.47597 -14.40836 -13.79524 -13.59390 -13.30723 -13.21529 -13.12434 -12.82736 -12.70808 -12.63714 -12.55485 -12.51224 -12.21490 -12.14706 -12.04482 -11.93587 -11.85501 -11.78580 -11.60663 -11.42470 -11.28531 -11.09282 -10.78846 -10.70220 -10.40180 -10.21635 -8.94360 -8.18406 -5.52453 -0.72139 -0.10407 1.29379 1.41395 1.51479 1.67951 1.89531 2.40374 2.63626 2.64456 2.93504 3.03834 3.28190 3.35438 3.57023 3.68235 3.82585 3.83775 3.91849 3.99021 3.99944 4.00662 4.30332 4.34976 4.40181 4.51780 4.56794 4.58887 4.77856 4.79970 4.82204 4.84328 4.88517 4.94608 4.96637 4.99083 5.00221 5.03371 5.04156 5.11585 5.14144 5.15957 5.30071 5.32825 5.36128 5.40944 5.50614 5.55258 5.74809 5.83300 6.09578 6.40603 6.86444 6.88434 7.09593 7.58838 7.96168 9.01870 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.002309 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.943156 B =12123.718012 C =12607.869898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.097 0.903 4 C -0.121 4.121 5 C 0.113 3.887 6 N -0.616 5.616 7 C -0.255 4.255 8 H 0.036 0.964 9 C -0.038 4.038 10 N -0.960 5.960 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.312 1.312 14 H -0.256 1.256 15 C 0.143 3.857 16 C 0.147 3.853 17 H 0.057 0.943 18 N -0.694 5.694 19 C 0.568 3.432 20 O -0.572 6.572 21 C -0.249 4.249 22 C 0.196 3.804 23 N -0.518 5.518 24 C 0.338 3.662 25 C -0.007 4.007 26 C -0.132 4.132 27 C -0.123 4.123 28 C -0.134 4.134 29 N -0.526 5.526 30 C 0.201 3.799 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.045 0.955 40 H 0.031 0.969 41 H 0.416 0.584 42 H 0.208 0.792 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.090 0.910 51 H 0.047 0.953 52 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.498 19.485 -15.247 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.115 0.885 4 C -0.160 4.160 5 C -0.011 4.011 6 N -0.341 5.341 7 C -0.384 4.384 8 H 0.054 0.946 9 C -0.233 4.233 10 N -0.605 5.605 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.241 1.241 14 H -0.180 1.180 15 C 0.017 3.983 16 C 0.041 3.959 17 H 0.075 0.925 18 N -0.346 5.346 19 C 0.354 3.646 20 O -0.452 6.452 21 C -0.257 4.257 22 C 0.029 3.971 23 N -0.231 5.231 24 C 0.072 3.928 25 C -0.009 4.009 26 C -0.190 4.190 27 C -0.181 4.181 28 C -0.192 4.192 29 N -0.239 5.239 30 C 0.034 3.966 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.254 0.746 42 H 0.224 0.776 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.109 0.891 51 H 0.066 0.934 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.525 19.040 -16.009 32.250 hybrid contribution 1.351 -0.754 1.476 2.138 sum -19.174 18.285 -14.534 30.219 Atomic orbital electron populations 1.21794 0.92771 1.01724 1.03211 1.21289 0.97156 0.99973 0.91868 0.88462 1.22007 0.94775 1.00645 0.98578 1.21553 0.94887 0.96880 0.87796 1.44340 1.48348 1.39973 1.01441 1.18764 1.10762 1.02955 1.05943 0.94615 1.26009 0.97453 0.99296 1.00527 1.70003 1.34070 1.24366 1.32091 0.85744 0.75642 0.81057 0.78958 1.19291 1.24124 1.17961 1.21300 0.92877 0.96739 0.87412 1.21328 0.93612 0.96675 0.84300 0.92478 1.45661 1.65012 1.15035 1.08911 1.18071 0.77401 0.85829 0.83268 1.90844 1.51378 1.17919 1.85054 1.21611 1.09276 0.98250 0.96534 1.24001 0.85544 0.89855 0.97708 1.68428 1.16140 1.39046 0.99513 1.23996 0.87941 0.86657 0.94222 1.19669 0.96748 0.95939 0.88532 1.21829 0.94466 1.00734 1.01997 1.21694 1.02136 0.92093 1.02152 1.21840 0.97167 1.02621 0.97528 1.68377 1.13756 1.10653 1.31080 1.23597 0.86032 1.00687 0.86259 0.94145 0.90448 0.91047 0.93408 0.88410 0.93277 0.93715 0.92848 0.93696 0.95020 0.74553 0.77600 0.93102 0.89178 0.92436 0.92577 0.90185 0.92354 0.92446 0.89139 0.93351 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.02 71.98 0.65 -1.79 16 2 C -0.08 -1.99 2.27 -10.75 -0.02 -2.02 16 3 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.12 -3.62 5.37 30.68 0.16 -3.46 16 5 C 0.11 4.53 4.20 86.36 0.36 4.89 16 6 N -0.62 -29.43 2.77 -699.10 -1.94 -31.36 16 7 C -0.25 -15.17 10.03 84.03 0.84 -14.32 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 9 C -0.04 -2.30 5.23 84.86 0.44 -1.86 16 10 N -0.96 -62.15 13.97 21.65 0.30 -61.85 16 11 Si 0.96 46.46 24.34 68.60 1.67 48.13 16 12 H -0.27 -11.91 6.62 99.48 0.66 -11.25 16 13 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 14 H -0.26 -11.59 6.64 99.48 0.66 -10.93 16 15 C 0.14 5.70 6.09 86.37 0.53 6.23 16 16 C 0.15 4.54 2.07 45.07 0.09 4.63 16 17 H 0.06 2.22 7.58 -2.39 -0.02 2.21 16 18 N -0.69 -15.80 4.33 -445.05 -1.93 -17.73 16 19 C 0.57 15.69 7.75 86.78 0.67 16.37 16 20 O -0.57 -21.97 16.11 -3.87 -0.06 -22.04 16 21 C -0.25 -5.43 5.91 -19.91 -0.12 -5.55 16 22 C 0.20 3.18 10.81 85.06 0.92 4.10 16 23 N -0.52 -9.47 8.98 -186.79 -1.68 -11.15 16 24 C 0.34 6.57 6.25 138.71 0.87 7.44 16 25 C -0.01 -0.10 0.92 -52.93 -0.05 -0.14 16 26 C -0.13 -1.59 8.37 71.98 0.60 -0.99 16 27 C -0.12 -1.39 7.66 71.98 0.55 -0.84 16 28 C -0.13 -1.70 8.37 71.98 0.60 -1.10 16 29 N -0.53 -11.68 9.77 -186.79 -1.82 -13.51 16 30 C 0.20 4.70 10.88 85.06 0.93 5.63 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 0.97 7.36 -2.39 -0.02 0.95 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.22 4.50 -2.39 -0.01 2.21 16 37 H 0.04 1.64 7.07 -2.38 -0.02 1.63 16 38 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.46 7.93 -2.39 -0.02 1.44 16 41 H 0.42 5.66 6.44 -92.71 -0.60 5.06 16 42 H 0.21 1.62 6.54 -2.91 -0.02 1.60 16 43 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.83 8.01 -2.39 -0.02 0.81 16 46 H 0.06 0.72 8.04 -2.39 -0.02 0.70 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.72 8.04 -2.38 -0.02 0.70 16 49 H 0.06 0.87 8.01 -2.39 -0.02 0.85 16 50 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.18 4.17 7.74 -2.91 -0.02 4.15 16 Total: -1.00 -79.65 405.00 2.80 -76.85 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.22 Total: 15.44 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 8.03 Total: 17.22 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -7.06 Total: -135.60 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -79.65 2.80 -76.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.262 kcal (2) G-P(sol) polarization free energy of solvation -79.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds