Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46139 * 2 1 4 4 C 1.53040 * 109.46207 * 240.02421 * 2 1 3 5 5 C 1.53189 * 109.31419 * 178.62648 * 4 2 1 6 6 N 1.46920 * 108.77318 * 54.63889 * 5 4 2 7 7 C 1.36938 * 120.62953 * 126.37226 * 6 5 4 8 8 H 1.07998 * 119.99856 * 331.62572 * 7 6 5 9 9 C 1.38817 * 120.00195 * 151.91317 * 7 6 5 10 10 N 1.31617 * 119.99623 * 343.21103 * 9 7 6 11 11 Si 1.86798 * 119.99913 * 163.21470 * 9 7 6 12 12 H 1.48503 * 109.47317 * 89.99934 * 11 9 7 13 13 H 1.48501 * 109.47092 * 209.99855 * 11 9 7 14 14 H 1.48496 * 109.47278 * 329.99696 * 11 9 7 15 15 C 1.46924 * 118.74008 * 306.63937 * 6 5 4 16 16 C 1.52764 * 109.00740 * 53.31239 * 15 6 5 17 17 H 1.08992 * 109.56370 * 185.55145 * 16 15 6 18 18 N 1.46498 * 109.38428 * 65.51338 * 16 15 6 19 19 C 1.34781 * 120.00069 * 85.14565 * 18 16 15 20 20 O 1.21553 * 119.99660 * 359.97438 * 19 18 16 21 21 C 1.47835 * 120.00177 * 179.97438 * 19 18 16 22 22 C 1.39942 * 120.93792 * 359.72327 * 21 19 18 23 23 N 1.32149 * 118.92410 * 179.69386 * 22 21 19 24 24 C 1.31868 * 120.96037 * 0.61628 * 23 22 21 25 25 C 1.50709 * 118.94635 * 179.68043 * 24 23 22 26 26 C 1.53006 * 109.46841 * 239.97277 * 25 24 23 27 27 C 1.52997 * 109.47409 * 359.97091 * 25 24 23 28 28 C 1.53002 * 109.47115 * 119.97614 * 25 24 23 29 29 N 1.31867 * 122.10295 * 359.65115 * 24 23 22 30 30 C 1.32149 * 120.96067 * 0.02798 * 29 24 23 31 31 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47300 * 299.97139 * 1 2 3 33 33 H 1.09000 * 109.47299 * 59.97250 * 1 2 3 34 34 H 1.09005 * 109.49382 * 58.67634 * 4 2 1 35 35 H 1.08997 * 109.52479 * 298.59874 * 4 2 1 36 36 H 1.08997 * 109.58558 * 294.84720 * 5 4 2 37 37 H 1.09004 * 109.70310 * 174.49457 * 5 4 2 38 38 H 0.96998 * 119.99419 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58721 * 173.14567 * 15 6 5 40 40 H 1.09000 * 109.58744 * 293.57044 * 15 6 5 41 41 H 0.96999 * 120.00407 * 265.14332 * 18 16 15 42 42 H 1.08001 * 120.53917 * 359.97250 * 22 21 19 43 43 H 1.09002 * 109.46589 * 60.00171 * 26 25 24 44 44 H 1.09000 * 109.47251 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.47027 * 300.00551 * 26 25 24 46 46 H 1.09000 * 109.46927 * 60.00231 * 27 25 24 47 47 H 1.08994 * 109.47165 * 179.97438 * 27 25 24 48 48 H 1.08999 * 109.47035 * 300.00749 * 27 25 24 49 49 H 1.09003 * 109.46853 * 59.99834 * 28 25 24 50 50 H 1.09000 * 109.47058 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.46985 * 299.99624 * 28 25 24 52 52 H 1.08000 * 120.53153 * 179.97438 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5714 -0.6890 -1.2639 6 7 4.0676 -1.2493 0.0003 7 6 4.9753 -2.2746 0.0005 8 1 5.0004 -2.9736 -0.8224 9 6 5.8592 -2.4190 1.0611 10 7 6.0616 -1.4169 1.8901 11 14 6.7614 -4.0353 1.3116 12 1 8.0468 -4.0052 0.5685 13 1 7.0308 -4.2328 2.7586 14 1 5.9240 -5.1530 0.8070 15 6 3.5669 -0.6926 1.2645 16 6 2.0395 -0.7208 1.2502 17 1 1.6570 -0.2207 2.1398 18 7 1.5790 -2.1114 1.2348 19 6 1.4501 -2.7915 2.3912 20 8 1.7166 -2.2512 3.4469 21 6 0.9848 -4.1947 2.3757 22 6 0.6672 -4.8341 1.1721 23 7 0.2609 -6.0911 1.2040 24 6 0.1419 -6.7368 2.3476 25 6 -0.3324 -8.1672 2.3317 26 6 -1.6238 -8.2853 3.1436 27 6 -0.5958 -8.6012 0.8884 28 6 0.7410 -9.0673 2.9471 29 7 0.4251 -6.1710 3.5046 30 6 0.8440 -4.9191 3.5647 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8897 34 1 1.6574 -0.2209 -2.1398 35 1 1.6976 -1.7557 -1.2387 36 1 3.9145 0.3404 -1.3671 37 1 3.9437 -1.2836 -2.0982 38 1 6.6795 -1.5177 2.6310 39 1 3.9342 -1.2911 2.0982 40 1 3.9096 0.3365 1.3718 41 1 1.3667 -2.5427 0.3923 42 1 0.7571 -4.3101 0.2320 43 1 -2.3885 -7.6441 2.7051 44 1 -1.9667 -9.3200 3.1325 45 1 -1.4362 -7.9760 4.1718 46 1 0.3242 -8.5171 0.3100 47 1 -0.9384 -9.6359 0.8769 48 1 -1.3605 -7.9600 0.4500 49 1 0.9286 -8.7580 3.9754 50 1 0.3978 -10.1018 2.9360 51 1 1.6611 -8.9831 2.3687 52 1 1.0737 -4.4625 4.5161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968699345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = 20.258127 kcal Electronic energy + Delta-G solvation = -32086.177779 eV Core-core repulsion = 28085.928120 eV Total energy + Delta-G solvation = -4000.249660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.37307 -39.59672 -37.69650 -36.69766 -34.30008 -33.88697 -32.92451 -31.59720 -31.02617 -29.14337 -27.50761 -27.45587 -27.37953 -25.25307 -24.36590 -24.03296 -22.34668 -21.20550 -21.06260 -19.99446 -18.81222 -17.98655 -17.44324 -16.72478 -16.46022 -15.39655 -15.10611 -14.95676 -14.56078 -14.52189 -14.18767 -14.06853 -13.89364 -13.76620 -13.63946 -13.50918 -13.27615 -12.98696 -12.66850 -12.41103 -12.36395 -12.03031 -11.87970 -11.79761 -11.64573 -11.47016 -11.20547 -11.17179 -11.14627 -11.07456 -10.95849 -10.87417 -10.74839 -10.57267 -10.27984 -9.97769 -9.77293 -9.60171 -9.50284 -9.46742 -9.28851 -8.50474 -8.47243 -6.67937 -5.80592 -3.23782 0.48339 1.02282 3.10052 3.34727 3.42872 3.43499 3.46872 3.65116 3.87776 4.01062 4.46942 4.47184 4.72937 4.78021 4.79026 4.85127 5.04361 5.16142 5.18012 5.24811 5.29298 5.38368 5.44412 5.47052 5.50862 5.63576 5.68187 5.72142 5.75629 5.81046 5.82785 5.87096 5.93476 5.95056 6.09489 6.11085 6.22671 6.25195 6.27826 6.30826 6.38576 6.47193 6.58520 6.70193 6.80827 6.86411 6.91822 7.29925 7.61886 7.77039 7.90680 7.98975 8.43312 8.58659 9.18277 9.82275 10.37871 11.27459 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003918 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.431655 B = 7145.074957 C = 8538.749468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.286 1.286 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.079 0.921 18 N -0.689 5.689 19 C 0.566 3.434 20 O -0.536 6.536 21 C -0.232 4.232 22 C 0.184 3.816 23 N -0.514 5.514 24 C 0.337 3.663 25 C -0.001 4.001 26 C -0.135 4.135 27 C -0.129 4.129 28 C -0.137 4.137 29 N -0.517 5.517 30 C 0.205 3.795 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.054 0.946 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.027 0.973 41 H 0.393 0.607 42 H 0.170 0.830 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.055 0.945 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 -7.969 -1.975 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.213 1.213 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.033 3.967 16 C 0.021 3.979 17 H 0.097 0.903 18 N -0.339 5.339 19 C 0.350 3.650 20 O -0.414 6.414 21 C -0.240 4.240 22 C 0.017 3.983 23 N -0.227 5.227 24 C 0.070 3.930 25 C -0.003 4.003 26 C -0.193 4.193 27 C -0.186 4.186 28 C -0.195 4.195 29 N -0.229 5.229 30 C 0.038 3.962 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.045 0.955 41 H 0.229 0.771 42 H 0.187 0.813 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.074 0.926 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.095 -8.486 -1.107 18.229 hybrid contribution 0.945 0.046 -0.301 0.993 sum -15.150 -8.440 -1.407 17.400 Atomic orbital electron populations 1.21854 0.95944 1.01296 1.01104 1.21326 0.94616 1.00019 0.95384 0.90208 1.22084 0.99308 0.99270 0.96180 1.20936 0.90605 0.96637 0.90285 1.43957 1.48176 1.39720 0.99118 1.19047 1.09919 1.02916 1.06636 0.91945 1.24992 0.97115 0.97081 0.99800 1.69987 1.37159 1.28989 1.17806 0.86440 0.79854 0.84057 0.77283 1.21272 1.21501 1.20724 1.21113 0.86529 0.97988 0.91050 1.21801 0.99072 0.79865 0.97179 0.90296 1.45739 1.66145 1.14294 1.07724 1.17606 0.78189 0.84488 0.84679 1.90772 1.50790 1.69209 1.30648 1.21934 1.06948 0.98221 0.96865 1.23452 0.87414 0.89803 0.97644 1.68262 1.15579 1.08587 1.30307 1.23286 0.89347 0.96664 0.83666 1.19430 0.96438 0.86495 0.97953 1.21841 0.95008 1.02086 1.00374 1.21721 1.02844 1.00371 0.93696 1.21857 0.97487 0.98595 1.01593 1.68263 1.13816 1.11267 1.29579 1.23478 0.86170 0.87956 0.98599 0.93181 0.93019 0.93034 0.92629 0.92912 0.96356 0.92766 0.93550 0.88512 0.95531 0.77119 0.81348 0.92754 0.91552 0.91354 0.91808 0.92370 0.91933 0.91326 0.91530 0.92567 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 37.16 0.34 -1.40 16 2 C -0.09 -1.38 2.48 -90.58 -0.22 -1.61 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -1.91 5.19 -26.61 -0.14 -2.05 16 5 C 0.14 2.71 6.52 -3.72 -0.02 2.68 16 6 N -0.59 -13.73 2.92 -172.59 -0.50 -14.23 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 9 C 0.01 0.26 4.92 -17.43 -0.09 0.18 16 10 N -0.90 -26.10 11.20 55.49 0.62 -25.48 16 11 Si 0.89 22.08 29.58 -169.99 -5.03 17.06 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.16 3.69 4.86 -3.93 -0.02 3.67 16 16 C 0.13 2.27 2.23 -68.03 -0.15 2.12 16 17 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 18 N -0.69 -11.57 4.20 -54.85 -0.23 -11.80 16 19 C 0.57 10.27 7.75 -12.33 -0.10 10.17 16 20 O -0.54 -11.44 16.11 5.32 0.09 -11.36 16 21 C -0.23 -3.66 5.91 -104.69 -0.62 -4.28 16 22 C 0.18 2.59 10.81 -16.78 -0.18 2.41 16 23 N -0.51 -7.28 8.98 -10.39 -0.09 -7.37 16 24 C 0.34 4.64 6.25 -157.06 -0.98 3.66 16 25 C 0.00 -0.01 0.92 -155.65 -0.14 -0.15 16 26 C -0.14 -1.23 8.37 37.16 0.31 -0.92 16 27 C -0.13 -1.24 7.66 37.16 0.28 -0.95 16 28 C -0.14 -1.38 8.37 37.16 0.31 -1.07 16 29 N -0.52 -7.52 9.77 -10.39 -0.10 -7.62 16 30 C 0.20 3.12 10.88 -16.78 -0.18 2.93 16 31 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.76 6.41 -51.93 -0.33 0.43 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.39 5.84 4.78 -40.82 -0.20 5.64 16 42 H 0.17 1.98 6.54 -52.49 -0.34 1.63 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.67 8.01 -51.93 -0.42 0.25 16 46 H 0.06 0.68 8.04 -51.93 -0.42 0.27 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 49 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.18 2.57 7.75 -52.49 -0.41 2.16 16 LS Contribution 408.26 15.07 6.15 6.15 Total: -1.00 -31.40 408.26 -9.50 -40.90 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.65 Total: 5.26 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.75 Total: 8.49 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.31 Total: -66.50 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.40 -9.50 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.161 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds