Wall clock time and date at job start Wed Apr 1 2020 04:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46139 * 2 1 4 4 C 1.53040 * 109.46207 * 240.02421 * 2 1 3 5 5 C 1.53189 * 109.31419 * 178.62648 * 4 2 1 6 6 N 1.46920 * 108.77318 * 54.63889 * 5 4 2 7 7 C 1.36938 * 120.62953 * 126.37226 * 6 5 4 8 8 H 1.07998 * 119.99856 * 331.62572 * 7 6 5 9 9 C 1.38817 * 120.00195 * 151.91317 * 7 6 5 10 10 N 1.31617 * 119.99623 * 343.21103 * 9 7 6 11 11 Si 1.86798 * 119.99913 * 163.21470 * 9 7 6 12 12 H 1.48503 * 109.47317 * 89.99934 * 11 9 7 13 13 H 1.48501 * 109.47092 * 209.99855 * 11 9 7 14 14 H 1.48496 * 109.47278 * 329.99696 * 11 9 7 15 15 C 1.46924 * 118.74008 * 306.63937 * 6 5 4 16 16 C 1.52764 * 109.00740 * 53.31239 * 15 6 5 17 17 H 1.08992 * 109.56370 * 185.55145 * 16 15 6 18 18 N 1.46498 * 109.38428 * 65.51338 * 16 15 6 19 19 C 1.34781 * 120.00069 * 85.14565 * 18 16 15 20 20 O 1.21553 * 119.99660 * 359.97438 * 19 18 16 21 21 C 1.47835 * 120.00177 * 179.97438 * 19 18 16 22 22 C 1.39942 * 120.93792 * 359.72327 * 21 19 18 23 23 N 1.32149 * 118.92410 * 179.69386 * 22 21 19 24 24 C 1.31868 * 120.96037 * 0.61628 * 23 22 21 25 25 C 1.50709 * 118.94635 * 179.68043 * 24 23 22 26 26 C 1.53006 * 109.46841 * 239.97277 * 25 24 23 27 27 C 1.52997 * 109.47409 * 359.97091 * 25 24 23 28 28 C 1.53002 * 109.47115 * 119.97614 * 25 24 23 29 29 N 1.31867 * 122.10295 * 359.65115 * 24 23 22 30 30 C 1.32149 * 120.96067 * 0.02798 * 29 24 23 31 31 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47300 * 299.97139 * 1 2 3 33 33 H 1.09000 * 109.47299 * 59.97250 * 1 2 3 34 34 H 1.09005 * 109.49382 * 58.67634 * 4 2 1 35 35 H 1.08997 * 109.52479 * 298.59874 * 4 2 1 36 36 H 1.08997 * 109.58558 * 294.84720 * 5 4 2 37 37 H 1.09004 * 109.70310 * 174.49457 * 5 4 2 38 38 H 0.96998 * 119.99419 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58721 * 173.14567 * 15 6 5 40 40 H 1.09000 * 109.58744 * 293.57044 * 15 6 5 41 41 H 0.96999 * 120.00407 * 265.14332 * 18 16 15 42 42 H 1.08001 * 120.53917 * 359.97250 * 22 21 19 43 43 H 1.09002 * 109.46589 * 60.00171 * 26 25 24 44 44 H 1.09000 * 109.47251 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.47027 * 300.00551 * 26 25 24 46 46 H 1.09000 * 109.46927 * 60.00231 * 27 25 24 47 47 H 1.08994 * 109.47165 * 179.97438 * 27 25 24 48 48 H 1.08999 * 109.47035 * 300.00749 * 27 25 24 49 49 H 1.09003 * 109.46853 * 59.99834 * 28 25 24 50 50 H 1.09000 * 109.47058 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.46985 * 299.99624 * 28 25 24 52 52 H 1.08000 * 120.53153 * 179.97438 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5714 -0.6890 -1.2639 6 7 4.0676 -1.2493 0.0003 7 6 4.9753 -2.2746 0.0005 8 1 5.0004 -2.9736 -0.8224 9 6 5.8592 -2.4190 1.0611 10 7 6.0616 -1.4169 1.8901 11 14 6.7614 -4.0353 1.3116 12 1 8.0468 -4.0052 0.5685 13 1 7.0308 -4.2328 2.7586 14 1 5.9240 -5.1530 0.8070 15 6 3.5669 -0.6926 1.2645 16 6 2.0395 -0.7208 1.2502 17 1 1.6570 -0.2207 2.1398 18 7 1.5790 -2.1114 1.2348 19 6 1.4501 -2.7915 2.3912 20 8 1.7166 -2.2512 3.4469 21 6 0.9848 -4.1947 2.3757 22 6 0.6672 -4.8341 1.1721 23 7 0.2609 -6.0911 1.2040 24 6 0.1419 -6.7368 2.3476 25 6 -0.3324 -8.1672 2.3317 26 6 -1.6238 -8.2853 3.1436 27 6 -0.5958 -8.6012 0.8884 28 6 0.7410 -9.0673 2.9471 29 7 0.4251 -6.1710 3.5046 30 6 0.8440 -4.9191 3.5647 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8897 34 1 1.6574 -0.2209 -2.1398 35 1 1.6976 -1.7557 -1.2387 36 1 3.9145 0.3404 -1.3671 37 1 3.9437 -1.2836 -2.0982 38 1 6.6795 -1.5177 2.6310 39 1 3.9342 -1.2911 2.0982 40 1 3.9096 0.3365 1.3718 41 1 1.3667 -2.5427 0.3923 42 1 0.7571 -4.3101 0.2320 43 1 -2.3885 -7.6441 2.7051 44 1 -1.9667 -9.3200 3.1325 45 1 -1.4362 -7.9760 4.1718 46 1 0.3242 -8.5171 0.3100 47 1 -0.9384 -9.6359 0.8769 48 1 -1.3605 -7.9600 0.4500 49 1 0.9286 -8.7580 3.9754 50 1 0.3978 -10.1018 2.9360 51 1 1.6611 -8.9831 2.3687 52 1 1.0737 -4.4625 4.5161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968699345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:50 Heat of formation + Delta-G solvation = 1.839315 kcal Electronic energy + Delta-G solvation = -32086.976479 eV Core-core repulsion = 28085.928120 eV Total energy + Delta-G solvation = -4001.048359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.51901 -41.02010 -39.14772 -37.64636 -35.99474 -35.11699 -34.35996 -32.98634 -32.62921 -30.65902 -28.93460 -28.27424 -28.20130 -26.51370 -25.75774 -25.42423 -23.84387 -22.79246 -22.34197 -20.98236 -20.35120 -19.27576 -18.80741 -18.39465 -17.49786 -16.90979 -16.66230 -16.40725 -15.87537 -15.76819 -15.59923 -15.47373 -15.07102 -14.91136 -14.79721 -14.72590 -14.54571 -14.44674 -14.12574 -13.61322 -13.21694 -13.15521 -13.12295 -13.02201 -12.83089 -12.75374 -12.62924 -12.57243 -12.50081 -12.28539 -12.14243 -12.04398 -11.97220 -11.94409 -11.86780 -11.56252 -11.32726 -11.07062 -10.99231 -10.69343 -10.55712 -10.42298 -10.00771 -8.64540 -7.88769 -5.32776 -0.69559 -0.12875 1.35509 1.38884 1.44899 1.75237 2.12598 2.44825 2.63809 2.67040 2.91803 3.27570 3.32649 3.60185 3.67932 3.78883 3.82692 3.92624 3.97866 3.98861 4.00199 4.13447 4.33809 4.52646 4.57246 4.68060 4.72092 4.76333 4.78859 4.81275 4.87351 4.90262 4.95898 4.97223 4.98618 5.01532 5.09447 5.13495 5.18879 5.25413 5.26935 5.30736 5.35303 5.47244 5.49478 5.50902 5.58730 5.67596 5.71203 5.73166 6.38017 6.51933 6.84882 7.13545 7.18753 7.87148 8.37306 9.16206 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003918 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.431655 B = 7145.074957 C = 8538.749468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.248 4.248 8 H 0.069 0.931 9 C -0.046 4.046 10 N -0.931 5.931 11 Si 0.946 3.054 12 H -0.280 1.280 13 H -0.303 1.303 14 H -0.274 1.274 15 C 0.170 3.830 16 C 0.138 3.862 17 H 0.069 0.931 18 N -0.679 5.679 19 C 0.565 3.435 20 O -0.577 6.577 21 C -0.249 4.249 22 C 0.192 3.808 23 N -0.518 5.518 24 C 0.333 3.667 25 C -0.006 4.006 26 C -0.130 4.130 27 C -0.123 4.123 28 C -0.134 4.134 29 N -0.523 5.523 30 C 0.200 3.800 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.013 0.987 37 H 0.057 0.943 38 H 0.245 0.755 39 H 0.048 0.952 40 H -0.001 1.001 41 H 0.405 0.595 42 H 0.194 0.806 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.042 0.958 52 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.745 -9.690 -4.379 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.087 0.913 9 C -0.241 4.241 10 N -0.577 5.577 11 Si 0.775 3.225 12 H -0.207 1.207 13 H -0.230 1.230 14 H -0.199 1.199 15 C 0.043 3.957 16 C 0.031 3.969 17 H 0.087 0.913 18 N -0.329 5.329 19 C 0.350 3.650 20 O -0.458 6.458 21 C -0.257 4.257 22 C 0.025 3.975 23 N -0.231 5.231 24 C 0.067 3.933 25 C -0.008 4.008 26 C -0.188 4.188 27 C -0.181 4.181 28 C -0.192 4.192 29 N -0.236 5.236 30 C 0.033 3.967 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.243 0.757 42 H 0.211 0.789 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.113 0.887 51 H 0.061 0.939 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -18.750 -10.225 -3.575 21.654 hybrid contribution 1.763 0.572 0.410 1.898 sum -16.987 -9.654 -3.165 19.793 Atomic orbital electron populations 1.21772 0.92995 1.02184 1.02368 1.21284 0.96884 0.99264 0.93200 0.90312 1.21971 0.95502 1.00494 0.97589 1.21159 0.93758 0.95961 0.88110 1.44154 1.47954 1.39528 1.00687 1.19387 1.09141 1.03324 1.05966 0.91324 1.25619 0.98728 0.99370 1.00404 1.70148 1.38412 1.30681 1.18466 0.85598 0.79220 0.81445 0.76210 1.20654 1.23008 1.19867 1.20792 0.89997 0.95234 0.89639 1.21492 0.95266 0.81020 0.99075 0.91256 1.45599 1.65419 1.13828 1.08023 1.17978 0.77368 0.85296 0.84316 1.90749 1.52635 1.70322 1.32120 1.21740 1.08916 0.97055 0.97942 1.23814 0.86033 0.89832 0.97817 1.68398 1.15905 1.08424 1.30331 1.24075 0.87984 0.97953 0.83302 1.19681 0.97274 0.84574 0.99236 1.21820 0.93938 1.03719 0.99312 1.21694 1.02133 1.01859 0.92409 1.21854 0.96805 1.00061 1.00523 1.68353 1.14264 1.10796 1.30141 1.23576 0.86015 0.88402 0.98733 0.92479 0.93103 0.90502 0.88941 0.91856 0.96868 0.92452 0.94607 0.93335 0.98312 0.75690 0.78939 0.92973 0.88918 0.92335 0.93108 0.89808 0.92237 0.92384 0.88726 0.93925 0.80284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.05 71.98 0.65 -2.10 16 2 C -0.09 -2.36 2.48 -10.77 -0.03 -2.38 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 4 C -0.12 -3.05 5.19 30.67 0.16 -2.89 16 5 C 0.14 4.94 6.52 86.36 0.56 5.51 16 6 N -0.60 -28.20 2.92 -699.94 -2.04 -30.24 16 7 C -0.25 -13.17 9.58 84.03 0.81 -12.37 16 8 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 9 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 10 N -0.93 -56.80 11.20 21.65 0.24 -56.55 16 11 Si 0.95 46.42 29.58 68.60 2.03 48.45 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.17 8.16 4.86 86.22 0.42 8.58 16 16 C 0.14 4.95 2.23 44.93 0.10 5.05 16 17 H 0.07 2.64 7.58 -2.39 -0.02 2.63 16 18 N -0.68 -22.37 4.20 -445.73 -1.87 -24.25 16 19 C 0.56 20.80 7.75 86.78 0.67 21.47 16 20 O -0.58 -25.80 16.11 -3.88 -0.06 -25.86 16 21 C -0.25 -7.81 5.91 -19.91 -0.12 -7.93 16 22 C 0.19 5.12 10.81 85.06 0.92 6.04 16 23 N -0.52 -13.79 8.98 -186.79 -1.68 -15.47 16 24 C 0.33 8.75 6.25 138.71 0.87 9.62 16 25 C -0.01 -0.11 0.92 -52.92 -0.05 -0.16 16 26 C -0.13 -2.05 8.37 71.98 0.60 -1.45 16 27 C -0.12 -2.04 7.66 71.98 0.55 -1.49 16 28 C -0.13 -2.45 8.37 71.98 0.60 -1.84 16 29 N -0.52 -15.04 9.77 -186.79 -1.82 -16.86 16 30 C 0.20 6.16 10.88 85.06 0.93 7.09 16 31 H 0.06 1.09 7.54 -2.39 -0.02 1.07 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 1.55 6.41 -2.39 -0.02 1.54 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 38 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.41 11.16 4.78 -92.71 -0.44 10.72 16 42 H 0.19 4.00 6.54 -2.91 -0.02 3.98 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.04 8.01 -2.39 -0.02 1.03 16 46 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 1.02 8.04 -2.39 -0.02 1.01 16 49 H 0.06 1.17 8.01 -2.39 -0.02 1.16 16 50 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.18 5.39 7.75 -2.91 -0.02 5.37 16 Total: -1.00 -71.87 408.26 3.32 -68.54 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.47 Total: 23.66 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 8.06 Total: 28.59 kcal Atomic # 7 Polarization: -136.19 SS G_CDS: -7.18 Total: -143.37 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -71.87 3.32 -68.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.382 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds