Wall clock time and date at job start Wed Apr 1 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99944 * 2 1 4 4 C 1.54324 * 109.88047 * 121.09725 * 2 1 3 5 5 H 1.09001 * 110.72057 * 23.23939 * 4 2 1 6 6 N 1.46506 * 110.71755 * 259.97088 * 4 2 1 7 7 C 1.36936 * 119.99985 * 160.02358 * 6 4 2 8 8 H 1.08003 * 119.99726 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00067 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47231 * 59.99674 * 11 9 7 13 13 H 1.48499 * 109.47073 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46711 * 299.99931 * 11 9 7 15 15 C 1.55156 * 102.94374 * 141.61062 * 4 2 1 16 16 C 1.54906 * 101.61451 * 324.47489 * 15 4 2 17 17 N 1.47019 * 109.88235 * 238.90431 * 2 1 3 18 18 C 1.34776 * 125.64982 * 61.60556 * 17 2 1 19 19 O 1.21564 * 120.00132 * 0.02562 * 18 17 2 20 20 C 1.47718 * 119.99830 * 180.02562 * 18 17 2 21 21 C 1.41503 * 126.51527 * 179.97438 * 20 18 17 22 22 C 1.35361 * 105.50131 * 180.02562 * 21 20 18 23 23 N 1.35035 * 107.23099 * 359.97438 * 22 21 20 24 24 C 1.46494 * 124.88583 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.46896 * 35.00448 * 24 23 22 26 26 C 1.53006 * 109.47196 * 179.97438 * 25 24 23 27 27 C 1.53002 * 109.46784 * 59.99580 * 26 25 24 28 28 C 1.52996 * 109.47298 * 300.00102 * 27 26 25 29 29 C 1.52995 * 109.47339 * 275.00427 * 24 23 22 30 30 N 1.28468 * 110.23014 * 359.72906 * 23 22 21 31 31 H 1.09007 * 109.46666 * 298.90798 * 1 2 3 32 32 H 1.09002 * 109.46808 * 58.89913 * 1 2 3 33 33 H 1.08994 * 109.47264 * 178.90820 * 1 2 3 34 34 H 0.96998 * 119.99751 * 340.02403 * 6 4 2 35 35 H 0.96999 * 120.00334 * 179.97438 * 10 9 7 36 36 H 1.09002 * 111.00677 * 82.57073 * 15 4 2 37 37 H 1.09002 * 111.00564 * 206.38331 * 15 4 2 38 38 H 1.09008 * 110.36767 * 155.86672 * 16 15 4 39 39 H 1.08997 * 110.36995 * 278.19392 * 16 15 4 40 40 H 1.08000 * 127.24794 * 359.97438 * 21 20 18 41 41 H 1.08002 * 126.38449 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47483 * 155.00034 * 24 23 22 43 43 H 1.08999 * 109.47097 * 299.99427 * 25 24 23 44 44 H 1.08999 * 109.47370 * 60.00121 * 25 24 23 45 45 H 1.09007 * 109.46939 * 299.99879 * 26 25 24 46 46 H 1.09001 * 109.47378 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.46562 * 180.02562 * 27 26 25 48 48 H 1.08995 * 109.46902 * 60.00767 * 27 26 25 49 49 H 1.09003 * 109.46925 * 299.99890 * 28 27 26 50 50 H 1.09003 * 109.46695 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.47084 * 299.99502 * 29 24 23 52 52 H 1.08999 * 109.47476 * 60.00069 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 1.3050 -1.4459 1.6183 6 7 2.4555 0.1961 2.2875 7 6 2.5575 -0.2225 3.5873 8 1 2.3429 -1.2499 3.8422 9 6 2.9376 0.6733 4.5772 10 7 3.2005 1.9249 4.2664 11 14 3.0774 0.1021 6.3503 12 1 4.0862 -0.9837 6.4424 13 1 3.4961 1.2414 7.2058 14 1 1.7604 -0.4053 6.8121 15 6 3.2876 -1.5143 0.6924 16 6 2.8151 -1.8804 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3620 -2.4657 19 8 1.1421 0.6234 -2.7186 20 6 2.3719 -1.1738 -3.5632 21 6 2.2255 -0.9330 -4.9499 22 6 2.9077 -1.9279 -5.5638 23 7 3.4286 -2.7122 -4.5959 24 6 4.2426 -3.9069 -4.8331 25 6 5.1127 -3.6931 -6.0734 26 6 5.9634 -4.9405 -6.3209 27 6 5.0480 -6.1464 -6.5416 28 6 4.1780 -6.3602 -5.3014 29 6 3.3269 -5.1124 -5.0542 30 7 3.1128 -2.2566 -3.4370 31 1 -0.3633 0.4968 0.8997 32 1 -0.3633 0.5309 -0.8800 33 1 -0.3633 -1.0274 -0.0196 34 1 2.6485 1.1187 2.0585 35 1 3.4658 2.5510 4.9581 36 1 4.1654 -0.8689 0.6604 37 1 3.4856 -2.4107 1.2801 38 1 3.6725 -2.0352 -1.3917 39 1 2.1892 -2.7724 -0.7125 40 1 1.6828 -0.1259 -5.4195 41 1 3.0154 -2.0682 -6.6293 42 1 4.8810 -4.0892 -3.9686 43 1 4.4744 -3.5108 -6.9380 44 1 5.7651 -2.8342 -5.9159 45 1 6.6017 -5.1224 -5.4562 46 1 6.5836 -4.7880 -7.2042 47 1 5.6541 -7.0352 -6.7175 48 1 4.4097 -5.9646 -7.4063 49 1 4.8164 -6.5421 -4.4367 50 1 3.5262 -7.2196 -5.4585 51 1 2.7071 -5.2647 -4.1706 52 1 2.6886 -4.9302 -5.9188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986269026.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:11 Heat of formation + Delta-G solvation = 48.795478 kcal Electronic energy + Delta-G solvation = -30882.378699 eV Core-core repulsion = 26883.366511 eV Total energy + Delta-G solvation = -3999.012187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.82329 -39.68781 -38.85379 -37.18694 -34.06254 -33.45343 -31.68345 -31.48633 -30.81874 -30.69455 -29.58454 -28.65671 -25.09649 -24.57371 -23.46382 -23.07163 -22.81228 -21.71457 -21.16610 -20.04973 -19.86972 -18.87980 -17.61973 -17.15323 -16.59006 -16.18831 -15.85946 -15.51596 -14.92184 -14.80811 -14.69762 -14.55592 -13.88834 -13.76969 -13.64232 -13.45155 -13.23983 -13.14708 -12.98528 -12.86401 -12.73289 -12.59449 -12.04805 -11.90618 -11.78467 -11.75053 -11.58660 -11.24621 -11.13652 -11.05024 -10.96146 -10.85710 -10.81877 -10.62643 -10.48210 -10.20324 -9.95996 -9.75356 -9.61297 -9.30879 -9.10959 -8.88031 -8.23862 -6.97196 -5.76531 -3.06560 1.63650 2.10271 2.21844 3.28462 3.44597 3.49166 3.50202 3.63130 3.86480 4.05467 4.25810 4.35591 4.50184 4.57287 4.58652 4.59381 4.75883 4.77894 4.82635 4.96739 5.04316 5.20699 5.23336 5.35617 5.38271 5.41817 5.46359 5.48340 5.49664 5.60284 5.61394 5.66218 5.67384 5.70210 5.74082 5.79423 5.83135 5.94433 6.09511 6.19276 6.23918 6.35523 6.45065 6.56554 6.66505 6.69042 6.72123 6.88887 7.02839 7.69816 7.80639 7.92202 8.40749 8.48618 9.52182 10.07606 10.42721 11.45720 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002326 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.346786 B =12036.461977 C =13230.833687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.177 3.823 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.156 4.156 16 C 0.104 3.896 17 N -0.596 5.596 18 C 0.612 3.388 19 O -0.539 6.539 20 C -0.007 4.007 21 C -0.180 4.180 22 C -0.022 4.022 23 N -0.281 5.281 24 C 0.150 3.850 25 C -0.129 4.129 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.116 4.116 29 C -0.129 4.129 30 N -0.255 5.255 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.160 0.840 41 H 0.176 0.824 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 -17.238 -26.009 31.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.356 5.356 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.019 4.019 17 N -0.328 5.328 18 C 0.399 3.601 19 O -0.415 6.415 20 C -0.168 4.168 21 C -0.208 4.208 22 C -0.164 4.164 23 N -0.069 5.069 24 C 0.049 3.951 25 C -0.167 4.167 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.154 4.154 29 C -0.168 4.168 30 N -0.090 5.090 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.178 0.822 41 H 0.193 0.807 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.703 -17.536 -25.228 30.946 hybrid contribution -0.091 0.489 0.262 0.562 sum 3.612 -17.047 -24.966 30.446 Atomic orbital electron populations 1.22050 0.94847 1.01609 1.02731 1.21916 0.94442 0.96894 0.84291 0.90337 1.21245 0.93595 0.91565 0.87083 0.91797 1.42342 1.80989 1.09133 1.03103 1.19154 1.39107 0.95075 0.83872 0.91087 1.24759 1.02237 0.95664 0.98100 1.69655 1.52591 1.02997 1.32604 0.86258 0.77793 0.77236 0.84812 1.21262 1.21721 1.21225 1.23577 1.01209 1.01544 0.93445 1.22497 0.95311 0.87554 0.96549 1.48391 1.51378 1.28577 1.04479 1.16526 0.80022 0.83339 0.80243 1.90763 1.40662 1.26951 1.83142 1.21975 1.03709 0.96399 0.94673 1.21748 1.05264 1.01785 0.92026 1.22701 1.02504 0.94740 0.96467 1.45785 1.37277 1.20826 1.02971 1.21620 0.91584 0.81291 1.00567 1.21927 0.98578 0.99688 0.96530 1.21503 0.97684 0.93545 1.02609 1.21613 0.98224 0.98220 0.98135 1.21521 0.98460 0.96862 0.98601 1.21965 0.98051 0.93499 1.03240 1.73684 1.15515 1.12286 1.07507 0.91096 0.91920 0.93120 0.77987 0.93372 0.90809 0.90764 0.89738 0.92133 0.82231 0.80652 0.87308 0.90628 0.90558 0.91236 0.90875 0.91363 0.91664 0.91241 0.90999 0.90607 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.09 37.16 0.34 -2.42 16 2 C 0.13 2.45 3.21 -66.95 -0.21 2.24 16 3 H 0.08 1.66 7.69 -51.93 -0.40 1.27 16 4 C 0.18 3.58 3.12 -66.09 -0.21 3.38 16 5 H 0.06 1.29 7.83 -51.93 -0.41 0.89 16 6 N -0.72 -17.92 5.25 -51.65 -0.27 -18.19 16 7 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 11 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 C -0.16 -2.80 6.76 -24.58 -0.17 -2.97 16 16 C 0.10 1.65 6.16 -2.47 -0.02 1.63 16 17 N -0.60 -10.58 3.07 -164.08 -0.50 -11.08 16 18 C 0.61 11.16 7.65 -12.39 -0.09 11.06 16 19 O -0.54 -11.13 15.97 5.31 0.08 -11.04 16 20 C -0.01 -0.11 6.97 -82.76 -0.58 -0.69 16 21 C -0.18 -2.27 10.81 -39.36 -0.43 -2.69 16 22 C -0.02 -0.21 10.54 -17.17 -0.18 -0.39 16 23 N -0.28 -2.87 3.22 -54.83 -0.18 -3.04 16 24 C 0.15 1.03 3.07 -67.94 -0.21 0.82 16 25 C -0.13 -0.61 4.81 -26.73 -0.13 -0.74 16 26 C -0.12 -0.41 5.92 -26.73 -0.16 -0.57 16 27 C -0.12 -0.42 5.92 -26.73 -0.16 -0.58 16 28 C -0.12 -0.49 5.92 -26.71 -0.16 -0.65 16 29 C -0.13 -0.76 5.53 -26.71 -0.15 -0.90 16 30 N -0.25 -3.45 9.09 33.42 0.30 -3.15 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.15 6.90 -51.93 -0.36 0.79 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.39 10.41 7.51 -40.82 -0.31 10.10 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.29 6.20 -51.92 -0.32 0.96 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.18 1.00 7.16 -52.49 -0.38 0.62 16 42 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.30 7.05 -51.93 -0.37 -0.07 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 49 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -33.00 408.17 -10.30 -43.30 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.84 Total: 7.86 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.75 Total: -0.66 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.08 Total: -62.87 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.00 -10.30 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986269026.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.099 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds