Wall clock time and date at job start Wed Apr 1 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99944 * 2 1 4 4 C 1.54324 * 109.88047 * 121.09725 * 2 1 3 5 5 H 1.09001 * 110.72057 * 23.23939 * 4 2 1 6 6 N 1.46506 * 110.71755 * 259.97088 * 4 2 1 7 7 C 1.36936 * 119.99985 * 160.02358 * 6 4 2 8 8 H 1.08003 * 119.99726 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00067 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47231 * 59.99674 * 11 9 7 13 13 H 1.48499 * 109.47073 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46711 * 299.99931 * 11 9 7 15 15 C 1.55156 * 102.94374 * 141.61062 * 4 2 1 16 16 C 1.54906 * 101.61451 * 324.47489 * 15 4 2 17 17 N 1.47019 * 109.88235 * 238.90431 * 2 1 3 18 18 C 1.34776 * 125.64982 * 61.60556 * 17 2 1 19 19 O 1.21564 * 120.00132 * 0.02562 * 18 17 2 20 20 C 1.47718 * 119.99830 * 180.02562 * 18 17 2 21 21 C 1.41503 * 126.51527 * 179.97438 * 20 18 17 22 22 C 1.35361 * 105.50131 * 180.02562 * 21 20 18 23 23 N 1.35035 * 107.23099 * 359.97438 * 22 21 20 24 24 C 1.46494 * 124.88583 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.46896 * 35.00448 * 24 23 22 26 26 C 1.53006 * 109.47196 * 179.97438 * 25 24 23 27 27 C 1.53002 * 109.46784 * 59.99580 * 26 25 24 28 28 C 1.52996 * 109.47298 * 300.00102 * 27 26 25 29 29 C 1.52995 * 109.47339 * 275.00427 * 24 23 22 30 30 N 1.28468 * 110.23014 * 359.72906 * 23 22 21 31 31 H 1.09007 * 109.46666 * 298.90798 * 1 2 3 32 32 H 1.09002 * 109.46808 * 58.89913 * 1 2 3 33 33 H 1.08994 * 109.47264 * 178.90820 * 1 2 3 34 34 H 0.96998 * 119.99751 * 340.02403 * 6 4 2 35 35 H 0.96999 * 120.00334 * 179.97438 * 10 9 7 36 36 H 1.09002 * 111.00677 * 82.57073 * 15 4 2 37 37 H 1.09002 * 111.00564 * 206.38331 * 15 4 2 38 38 H 1.09008 * 110.36767 * 155.86672 * 16 15 4 39 39 H 1.08997 * 110.36995 * 278.19392 * 16 15 4 40 40 H 1.08000 * 127.24794 * 359.97438 * 21 20 18 41 41 H 1.08002 * 126.38449 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47483 * 155.00034 * 24 23 22 43 43 H 1.08999 * 109.47097 * 299.99427 * 25 24 23 44 44 H 1.08999 * 109.47370 * 60.00121 * 25 24 23 45 45 H 1.09007 * 109.46939 * 299.99879 * 26 25 24 46 46 H 1.09001 * 109.47378 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.46562 * 180.02562 * 27 26 25 48 48 H 1.08995 * 109.46902 * 60.00767 * 27 26 25 49 49 H 1.09003 * 109.46925 * 299.99890 * 28 27 26 50 50 H 1.09003 * 109.46695 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.47084 * 299.99502 * 29 24 23 52 52 H 1.08999 * 109.47476 * 60.00069 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 1.3050 -1.4459 1.6183 6 7 2.4555 0.1961 2.2875 7 6 2.5575 -0.2225 3.5873 8 1 2.3429 -1.2499 3.8422 9 6 2.9376 0.6733 4.5772 10 7 3.2005 1.9249 4.2664 11 14 3.0774 0.1021 6.3503 12 1 4.0862 -0.9837 6.4424 13 1 3.4961 1.2414 7.2058 14 1 1.7604 -0.4053 6.8121 15 6 3.2876 -1.5143 0.6924 16 6 2.8151 -1.8804 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3620 -2.4657 19 8 1.1421 0.6234 -2.7186 20 6 2.3719 -1.1738 -3.5632 21 6 2.2255 -0.9330 -4.9499 22 6 2.9077 -1.9279 -5.5638 23 7 3.4286 -2.7122 -4.5959 24 6 4.2426 -3.9069 -4.8331 25 6 5.1127 -3.6931 -6.0734 26 6 5.9634 -4.9405 -6.3209 27 6 5.0480 -6.1464 -6.5416 28 6 4.1780 -6.3602 -5.3014 29 6 3.3269 -5.1124 -5.0542 30 7 3.1128 -2.2566 -3.4370 31 1 -0.3633 0.4968 0.8997 32 1 -0.3633 0.5309 -0.8800 33 1 -0.3633 -1.0274 -0.0196 34 1 2.6485 1.1187 2.0585 35 1 3.4658 2.5510 4.9581 36 1 4.1654 -0.8689 0.6604 37 1 3.4856 -2.4107 1.2801 38 1 3.6725 -2.0352 -1.3917 39 1 2.1892 -2.7724 -0.7125 40 1 1.6828 -0.1259 -5.4195 41 1 3.0154 -2.0682 -6.6293 42 1 4.8810 -4.0892 -3.9686 43 1 4.4744 -3.5108 -6.9380 44 1 5.7651 -2.8342 -5.9159 45 1 6.6017 -5.1224 -5.4562 46 1 6.5836 -4.7880 -7.2042 47 1 5.6541 -7.0352 -6.7175 48 1 4.4097 -5.9646 -7.4063 49 1 4.8164 -6.5421 -4.4367 50 1 3.5262 -7.2196 -5.4585 51 1 2.7071 -5.2647 -4.1706 52 1 2.6886 -4.9302 -5.9188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986269026.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:09 Heat of formation + Delta-G solvation = 29.574042 kcal Electronic energy + Delta-G solvation = -30883.212203 eV Core-core repulsion = 26883.366511 eV Total energy + Delta-G solvation = -3999.845691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.72675 -41.10542 -39.36704 -38.70014 -35.92985 -34.23973 -33.33617 -32.33612 -31.99617 -31.55283 -30.95156 -29.76462 -26.86971 -25.63277 -24.79505 -24.02581 -23.62475 -22.81981 -21.91289 -21.54104 -20.45678 -20.16401 -19.12927 -18.48718 -17.86777 -17.39126 -16.88445 -16.55339 -16.18172 -16.06483 -15.51160 -15.42545 -15.14999 -15.06035 -14.82550 -14.55799 -14.52839 -14.20820 -14.01191 -13.85576 -13.63842 -13.43090 -13.29271 -13.20435 -13.16139 -12.91002 -12.66584 -12.57388 -12.33639 -12.21262 -12.13053 -12.11364 -11.83933 -11.70917 -11.56202 -11.50785 -11.39091 -11.21914 -11.13571 -10.88072 -10.22952 -10.05241 -9.66396 -9.03080 -7.92897 -5.23477 0.53006 1.19840 1.42804 1.49407 1.52683 1.58499 1.95058 2.34742 2.58120 3.21664 3.38010 3.49789 3.63757 3.72050 3.75197 3.85304 3.91687 3.96004 4.07391 4.17085 4.19871 4.27195 4.29667 4.33283 4.39778 4.44556 4.48171 4.51395 4.62834 4.66097 4.70566 4.73684 4.80447 4.89735 4.94329 5.00506 5.02925 5.04692 5.16819 5.17571 5.18385 5.20040 5.25471 5.33374 5.34900 5.40189 5.46905 5.51625 5.54765 5.92071 6.26634 6.46775 6.84570 7.13200 7.33123 8.04081 8.29378 9.30467 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002326 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.346786 B =12036.461977 C =13230.833687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.049 0.951 4 C 0.174 3.826 5 H 0.072 0.928 6 N -0.728 5.728 7 C -0.237 4.237 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.976 3.024 12 H -0.275 1.275 13 H -0.300 1.300 14 H -0.277 1.277 15 C -0.146 4.146 16 C 0.118 3.882 17 N -0.598 5.598 18 C 0.607 3.393 19 O -0.574 6.574 20 C -0.041 4.041 21 C -0.200 4.200 22 C 0.003 3.997 23 N -0.271 5.271 24 C 0.143 3.857 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.122 4.122 28 C -0.113 4.113 29 C -0.123 4.123 30 N -0.267 5.267 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.221 0.779 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.057 0.943 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 -20.439 -28.028 34.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.067 0.933 4 C 0.064 3.936 5 H 0.090 0.910 6 N -0.367 5.367 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.804 3.196 12 H -0.201 1.201 13 H -0.226 1.226 14 H -0.203 1.203 15 C -0.187 4.187 16 C -0.005 4.005 17 N -0.331 5.331 18 C 0.396 3.604 19 O -0.453 6.453 20 C -0.199 4.199 21 C -0.228 4.228 22 C -0.140 4.140 23 N -0.059 5.059 24 C 0.044 3.956 25 C -0.162 4.162 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.151 4.151 29 C -0.162 4.162 30 N -0.104 5.104 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.180 0.820 41 H 0.238 0.762 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.076 0.924 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.356 -20.810 -27.270 34.579 hybrid contribution -0.262 1.385 0.746 1.595 sum 4.094 -19.425 -26.524 33.131 Atomic orbital electron populations 1.21937 0.93841 1.02393 1.01975 1.21687 0.95173 0.95472 0.84820 0.93266 1.21392 0.94737 0.91052 0.86388 0.91030 1.42500 1.81335 1.09245 1.03655 1.19576 1.37161 0.95405 0.84750 0.89910 1.25605 1.03103 0.95850 1.02297 1.69833 1.54641 1.04253 1.33464 0.85181 0.78115 0.76558 0.79706 1.20137 1.22606 1.20275 1.23408 0.99120 1.01278 0.94928 1.22478 0.95698 0.87302 0.94992 1.48435 1.51573 1.28900 1.04161 1.17000 0.79474 0.83200 0.80739 1.90725 1.42300 1.28558 1.83720 1.21670 1.05923 0.97629 0.94713 1.21946 1.06575 1.03201 0.91110 1.23253 0.99944 0.92719 0.98047 1.46202 1.36248 1.21099 1.02323 1.21980 0.91651 0.80390 1.01597 1.21938 0.98397 1.00102 0.95739 1.21504 0.97578 0.92981 1.03008 1.21603 0.98150 0.98411 0.97736 1.21514 0.98425 0.96104 0.99099 1.21922 0.97917 0.93660 1.02668 1.73571 1.15559 1.11913 1.09322 0.91729 0.92722 0.91469 0.79670 0.94089 0.92769 0.89204 0.88817 0.90235 0.82017 0.76240 0.87863 0.89047 0.91138 0.91556 0.89739 0.90658 0.91005 0.91464 0.90468 0.92409 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.09 71.98 0.65 -4.58 16 2 C 0.13 5.24 3.21 45.34 0.15 5.38 16 3 H 0.05 2.23 7.69 -2.39 -0.02 2.21 16 4 C 0.17 7.09 3.12 46.18 0.14 7.23 16 5 H 0.07 2.83 7.83 -2.39 -0.02 2.81 16 6 N -0.73 -37.29 5.25 -317.32 -1.67 -38.96 16 7 C -0.24 -13.03 9.98 84.03 0.84 -12.19 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 10 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 11 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 C -0.15 -5.18 6.76 31.98 0.22 -4.96 16 16 C 0.12 3.62 6.16 86.83 0.54 4.15 16 17 N -0.60 -21.54 3.07 -791.30 -2.43 -23.96 16 18 C 0.61 22.64 7.65 86.75 0.66 23.30 16 19 O -0.57 -24.67 15.97 -3.92 -0.06 -24.74 16 20 C -0.04 -1.26 6.97 42.46 0.30 -0.96 16 21 C -0.20 -4.83 10.81 22.41 0.24 -4.59 16 22 C 0.00 0.05 10.54 83.54 0.88 0.93 16 23 N -0.27 -4.92 3.22 -327.40 -1.05 -5.98 16 24 C 0.14 1.61 3.07 44.99 0.14 1.74 16 25 C -0.12 -0.77 4.81 30.60 0.15 -0.62 16 26 C -0.11 -0.45 5.92 30.60 0.18 -0.27 16 27 C -0.12 -0.43 5.92 30.59 0.18 -0.25 16 28 C -0.11 -0.66 5.92 30.61 0.18 -0.48 16 29 C -0.12 -1.14 5.53 30.61 0.17 -0.97 16 30 N -0.27 -6.91 9.09 -48.17 -0.44 -7.35 16 31 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.05 2.07 6.90 -2.39 -0.02 2.06 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.37 20.95 7.51 -92.71 -0.70 20.26 16 35 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.09 2.76 6.20 -2.38 -0.01 2.75 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.22 1.43 7.16 -2.91 -0.02 1.41 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 0.30 7.05 -2.39 -0.02 0.29 16 44 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 46 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 47 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 48 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.59 408.17 2.95 -70.64 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.21 Total: 33.37 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.08 Total: 8.95 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -5.30 Total: -136.32 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.59 2.95 -70.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986269026.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.210 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds