Wall clock time and date at job start Wed Apr 1 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87538 * 2 1 4 4 C 1.54332 * 109.88205 * 238.98350 * 2 1 3 5 5 H 1.09001 * 110.71550 * 336.93275 * 4 2 1 6 6 N 1.46505 * 110.71747 * 100.02536 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31617 * 119.99873 * 180.27450 * 9 7 6 11 11 Si 1.86800 * 120.00209 * 0.27770 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99559 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00079 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99901 * 11 9 7 15 15 C 1.55150 * 102.94391 * 218.38859 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88647 * 121.17882 * 2 1 3 18 18 C 1.34777 * 125.64806 * 298.39420 * 17 2 1 19 19 O 1.21572 * 119.99920 * 0.02562 * 18 17 2 20 20 C 1.47712 * 120.00149 * 179.97438 * 18 17 2 21 21 C 1.41508 * 126.51698 * 180.02562 * 20 18 17 22 22 C 1.35367 * 105.49944 * 180.02562 * 21 20 18 23 23 N 1.35033 * 107.23120 * 359.97438 * 22 21 20 24 24 C 1.46496 * 124.88282 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47360 * 34.99779 * 24 23 22 26 26 C 1.53008 * 109.46858 * 179.97438 * 25 24 23 27 27 C 1.52992 * 109.47081 * 60.00283 * 26 25 24 28 28 C 1.52998 * 109.47044 * 299.99603 * 27 26 25 29 29 C 1.53002 * 109.46973 * 274.99469 * 24 23 22 30 30 N 1.28468 * 110.23154 * 359.72634 * 23 22 21 31 31 H 1.09002 * 109.46953 * 181.01863 * 1 2 3 32 32 H 1.09008 * 109.46982 * 301.01098 * 1 2 3 33 33 H 1.08997 * 109.47268 * 61.01462 * 1 2 3 34 34 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 35 35 H 0.97000 * 120.00553 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 37 37 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 38 38 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 39 39 H 1.08994 * 110.46433 * 81.87618 * 16 15 4 40 40 H 1.07994 * 127.24789 * 0.02562 * 21 20 18 41 41 H 1.08003 * 126.38240 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.46988 * 154.99925 * 24 23 22 43 43 H 1.08990 * 109.47114 * 300.00057 * 25 24 23 44 44 H 1.09003 * 109.46945 * 60.00400 * 25 24 23 45 45 H 1.08998 * 109.47525 * 299.99670 * 26 25 24 46 46 H 1.09001 * 109.46314 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.47237 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.47441 * 59.99336 * 27 26 25 49 49 H 1.08997 * 109.47520 * 300.00198 * 28 27 26 50 50 H 1.09004 * 109.47452 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.46992 * 300.00012 * 29 24 23 52 52 H 1.09004 * 109.46891 * 60.00397 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1895 -3.6003 8 1 2.1645 -1.1941 -3.8667 9 6 2.8322 0.7097 -4.5895 10 7 2.8296 0.3378 -5.8520 11 14 3.3393 2.4476 -4.1289 12 1 4.8037 2.4878 -3.8857 13 1 2.9959 3.3737 -5.2377 14 1 2.6214 2.8626 -2.8969 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8805 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8075 -0.3656 2.4651 19 8 1.1413 0.6190 2.7195 20 6 2.3720 -1.1787 3.5615 21 6 2.2256 -0.9399 4.9485 22 6 2.9089 -1.9351 5.5611 23 7 3.4294 -2.7183 4.5920 24 6 4.2433 -3.9133 4.8276 25 6 3.7448 -4.6305 6.0837 26 6 4.5945 -5.8790 6.3293 27 6 6.0565 -5.4711 6.5213 28 6 6.5551 -4.7539 5.2652 29 6 5.7052 -3.5049 5.0198 30 7 3.1029 -2.2682 3.4339 31 1 -0.3633 -1.0275 0.0183 32 1 -0.3633 0.5295 0.8808 33 1 -0.3633 0.4980 -0.8989 34 1 2.7187 1.1017 -2.0481 35 1 3.0913 0.9659 -6.5433 36 1 3.4851 -2.4092 -1.2832 37 1 4.1654 -0.8679 -0.6618 38 1 3.6717 -2.0358 1.3893 39 1 2.1892 -2.7729 0.7107 40 1 1.6830 -0.1335 5.4193 41 1 3.0169 -2.0767 6.6263 42 1 4.1627 -4.5825 3.9709 43 1 3.8254 -3.9614 6.9402 44 1 2.7033 -4.9216 5.9466 45 1 4.5135 -6.5481 5.4726 46 1 4.2396 -6.3897 7.2244 47 1 6.6620 -6.3605 6.6958 48 1 6.1376 -4.8021 7.3780 49 1 6.4741 -5.4228 4.4085 50 1 7.5966 -4.4628 5.4021 51 1 6.0604 -2.9939 4.1248 52 1 5.7859 -2.8357 5.8765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986269033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:15 Heat of formation + Delta-G solvation = 52.489148 kcal Electronic energy + Delta-G solvation = -30963.556090 eV Core-core repulsion = 26964.704073 eV Total energy + Delta-G solvation = -3998.852018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.87515 -39.79082 -38.89102 -37.31045 -34.21691 -33.49609 -31.76218 -31.52768 -30.95182 -30.76127 -29.86478 -28.91489 -25.26143 -24.63823 -23.48911 -23.04354 -22.58425 -21.75197 -21.21516 -20.18085 -19.94928 -18.98586 -17.66967 -17.53879 -16.68076 -16.28038 -15.90718 -15.67883 -14.97118 -14.80529 -14.74132 -14.42632 -14.10108 -13.87102 -13.82200 -13.47458 -13.27897 -13.16004 -12.98459 -12.85883 -12.71446 -12.66001 -12.19476 -11.95857 -11.92723 -11.80368 -11.78336 -11.30318 -11.26404 -11.12460 -11.07249 -10.92686 -10.85464 -10.71652 -10.55287 -10.26546 -10.01139 -9.79460 -9.58923 -9.36005 -9.16297 -8.91948 -8.33786 -7.29683 -5.78552 -3.15125 1.57671 2.04559 2.17161 3.19383 3.39271 3.43550 3.47208 3.55446 3.83236 4.02830 4.23358 4.32504 4.46589 4.53029 4.55461 4.58868 4.72731 4.75366 4.80289 4.93095 4.99034 5.09920 5.15805 5.25186 5.32780 5.34758 5.39251 5.44661 5.46365 5.55615 5.57010 5.58941 5.61881 5.65171 5.66960 5.70518 5.77577 5.83356 5.93670 6.04693 6.10225 6.28211 6.34967 6.44767 6.59709 6.60989 6.62847 6.77733 6.88357 7.72875 7.84434 7.96310 8.39675 8.40094 9.17198 9.89910 10.08901 11.39277 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002422 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.538468 B =11556.660925 C =12565.871334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 H 0.075 0.925 4 C 0.182 3.818 5 H 0.076 0.924 6 N -0.739 5.739 7 C -0.245 4.245 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.932 5.932 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.275 1.275 15 C -0.156 4.156 16 C 0.104 3.896 17 N -0.596 5.596 18 C 0.613 3.387 19 O -0.539 6.539 20 C -0.009 4.009 21 C -0.180 4.180 22 C -0.021 4.021 23 N -0.280 5.280 24 C 0.150 3.850 25 C -0.128 4.128 26 C -0.115 4.115 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.130 4.130 30 N -0.254 5.254 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.160 0.840 41 H 0.177 0.823 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 -13.612 29.744 33.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.093 0.907 4 C 0.070 3.930 5 H 0.094 0.906 6 N -0.381 5.381 7 C -0.375 4.375 8 H 0.110 0.890 9 C -0.189 4.189 10 N -0.579 5.579 11 Si 0.712 3.288 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.202 1.202 15 C -0.197 4.197 16 C -0.020 4.020 17 N -0.329 5.329 18 C 0.400 3.600 19 O -0.415 6.415 20 C -0.169 4.169 21 C -0.208 4.208 22 C -0.164 4.164 23 N -0.068 5.068 24 C 0.049 3.951 25 C -0.167 4.167 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.154 4.154 29 C -0.168 4.168 30 N -0.089 5.089 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.178 0.822 41 H 0.194 0.806 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.236 -13.976 28.902 32.528 hybrid contribution 0.141 1.763 0.846 1.960 sum 5.377 -12.213 29.748 32.604 Atomic orbital electron populations 1.22060 0.94615 1.01923 1.02752 1.21980 0.94757 0.96652 0.84582 0.90725 1.21233 0.94007 0.91257 0.86472 0.90583 1.42713 1.80897 1.11071 1.03371 1.19041 1.38724 0.98908 0.80790 0.89001 1.24656 1.01404 0.97736 0.95060 1.69694 1.54120 1.35208 0.98860 0.86588 0.78668 0.86062 0.77485 1.21056 1.21670 1.20157 1.23538 1.00721 1.01810 0.93614 1.22492 0.95425 0.87660 0.96378 1.48356 1.51491 1.28629 1.04434 1.16533 0.79947 0.83338 0.80215 1.90765 1.40561 1.27076 1.83117 1.21944 1.03977 0.96325 0.94630 1.21746 1.05298 1.01770 0.92010 1.22710 1.02401 0.94767 0.96477 1.45793 1.36864 1.21165 1.02958 1.21635 0.89794 0.83128 1.00518 1.21923 1.00626 0.97792 0.96342 1.21500 0.94800 0.96401 1.02622 1.21613 0.95896 1.00618 0.98081 1.21523 0.99319 0.96124 0.98484 1.21975 0.92586 0.98922 1.03351 1.73681 1.15386 1.12277 1.07605 0.92829 0.91864 0.91069 0.80387 0.92998 0.90211 0.90947 0.89649 0.91864 0.82240 0.80619 0.87271 0.90630 0.90590 0.91226 0.90877 0.91336 0.91662 0.91210 0.90958 0.90568 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.09 37.16 0.34 -2.33 16 2 C 0.12 2.26 3.21 -66.95 -0.22 2.04 16 3 H 0.07 1.47 7.71 -51.93 -0.40 1.07 16 4 C 0.18 3.51 3.14 -66.09 -0.21 3.31 16 5 H 0.08 1.49 7.80 -51.93 -0.40 1.09 16 6 N -0.74 -17.37 5.03 -51.65 -0.26 -17.63 16 7 C -0.24 -6.78 10.44 -15.06 -0.16 -6.93 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 10 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 11 Si 0.88 22.22 27.74 -169.99 -4.72 17.51 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -6.62 6.51 56.52 0.37 -6.25 16 15 C -0.16 -2.64 6.77 -24.59 -0.17 -2.81 16 16 C 0.10 1.56 6.15 -2.53 -0.02 1.54 16 17 N -0.60 -10.10 3.07 -164.17 -0.50 -10.60 16 18 C 0.61 10.71 7.65 -12.39 -0.09 10.62 16 19 O -0.54 -10.72 15.97 5.30 0.08 -10.63 16 20 C -0.01 -0.13 6.97 -82.76 -0.58 -0.71 16 21 C -0.18 -2.18 10.81 -39.36 -0.43 -2.60 16 22 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 23 N -0.28 -2.74 3.22 -54.83 -0.18 -2.91 16 24 C 0.15 0.97 3.07 -67.93 -0.21 0.77 16 25 C -0.13 -0.56 4.82 -26.73 -0.13 -0.69 16 26 C -0.12 -0.38 5.92 -26.73 -0.16 -0.54 16 27 C -0.12 -0.41 5.92 -26.74 -0.16 -0.57 16 28 C -0.12 -0.49 5.92 -26.70 -0.16 -0.64 16 29 C -0.13 -0.75 5.53 -26.70 -0.15 -0.90 16 30 N -0.25 -3.30 9.10 33.42 0.30 -3.00 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.11 6.90 -51.92 -0.36 0.76 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.36 8.56 5.42 -40.82 -0.22 8.34 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.23 6.21 -51.93 -0.32 0.91 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.18 0.93 7.16 -52.48 -0.38 0.56 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.27 7.05 -51.93 -0.37 -0.09 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -33.74 405.07 -9.95 -43.68 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.81 Total: 6.39 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.76 Total: -0.69 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.14 Total: -62.37 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.72 Total: 17.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.74 -9.95 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986269033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.174 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds