Wall clock time and date at job start Wed Apr 1 2020 04:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87538 * 2 1 4 4 C 1.54332 * 109.88205 * 238.98350 * 2 1 3 5 5 H 1.09001 * 110.71550 * 336.93275 * 4 2 1 6 6 N 1.46505 * 110.71747 * 100.02536 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31617 * 119.99873 * 180.27450 * 9 7 6 11 11 Si 1.86800 * 120.00209 * 0.27770 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99559 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00079 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99901 * 11 9 7 15 15 C 1.55150 * 102.94391 * 218.38859 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88647 * 121.17882 * 2 1 3 18 18 C 1.34777 * 125.64806 * 298.39420 * 17 2 1 19 19 O 1.21572 * 119.99920 * 0.02562 * 18 17 2 20 20 C 1.47712 * 120.00149 * 179.97438 * 18 17 2 21 21 C 1.41508 * 126.51698 * 180.02562 * 20 18 17 22 22 C 1.35367 * 105.49944 * 180.02562 * 21 20 18 23 23 N 1.35033 * 107.23120 * 359.97438 * 22 21 20 24 24 C 1.46496 * 124.88282 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47360 * 34.99779 * 24 23 22 26 26 C 1.53008 * 109.46858 * 179.97438 * 25 24 23 27 27 C 1.52992 * 109.47081 * 60.00283 * 26 25 24 28 28 C 1.52998 * 109.47044 * 299.99603 * 27 26 25 29 29 C 1.53002 * 109.46973 * 274.99469 * 24 23 22 30 30 N 1.28468 * 110.23154 * 359.72634 * 23 22 21 31 31 H 1.09002 * 109.46953 * 181.01863 * 1 2 3 32 32 H 1.09008 * 109.46982 * 301.01098 * 1 2 3 33 33 H 1.08997 * 109.47268 * 61.01462 * 1 2 3 34 34 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 35 35 H 0.97000 * 120.00553 * 180.02562 * 10 9 7 36 36 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 37 37 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 38 38 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 39 39 H 1.08994 * 110.46433 * 81.87618 * 16 15 4 40 40 H 1.07994 * 127.24789 * 0.02562 * 21 20 18 41 41 H 1.08003 * 126.38240 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.46988 * 154.99925 * 24 23 22 43 43 H 1.08990 * 109.47114 * 300.00057 * 25 24 23 44 44 H 1.09003 * 109.46945 * 60.00400 * 25 24 23 45 45 H 1.08998 * 109.47525 * 299.99670 * 26 25 24 46 46 H 1.09001 * 109.46314 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.47237 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.47441 * 59.99336 * 27 26 25 49 49 H 1.08997 * 109.47520 * 300.00198 * 28 27 26 50 50 H 1.09004 * 109.47452 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.46992 * 300.00012 * 29 24 23 52 52 H 1.09004 * 109.46891 * 60.00397 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2438 5 1 1.3039 -1.4414 -1.6221 6 7 2.4554 0.1993 -2.2873 7 6 2.4581 -0.1895 -3.6003 8 1 2.1645 -1.1941 -3.8667 9 6 2.8322 0.7097 -4.5895 10 7 2.8296 0.3378 -5.8520 11 14 3.3393 2.4476 -4.1289 12 1 4.8037 2.4878 -3.8857 13 1 2.9959 3.3737 -5.2377 14 1 2.6214 2.8626 -2.8969 15 6 3.2876 -1.5133 -0.6946 16 6 2.8145 -1.8805 0.7340 17 7 2.0301 -0.7157 1.1828 18 6 1.8075 -0.3656 2.4651 19 8 1.1413 0.6190 2.7195 20 6 2.3720 -1.1787 3.5615 21 6 2.2256 -0.9399 4.9485 22 6 2.9089 -1.9351 5.5611 23 7 3.4294 -2.7183 4.5920 24 6 4.2433 -3.9133 4.8276 25 6 3.7448 -4.6305 6.0837 26 6 4.5945 -5.8790 6.3293 27 6 6.0565 -5.4711 6.5213 28 6 6.5551 -4.7539 5.2652 29 6 5.7052 -3.5049 5.0198 30 7 3.1029 -2.2682 3.4339 31 1 -0.3633 -1.0275 0.0183 32 1 -0.3633 0.5295 0.8808 33 1 -0.3633 0.4980 -0.8989 34 1 2.7187 1.1017 -2.0481 35 1 3.0913 0.9659 -6.5433 36 1 3.4851 -2.4092 -1.2832 37 1 4.1654 -0.8679 -0.6618 38 1 3.6717 -2.0358 1.3893 39 1 2.1892 -2.7729 0.7107 40 1 1.6830 -0.1335 5.4193 41 1 3.0169 -2.0767 6.6263 42 1 4.1627 -4.5825 3.9709 43 1 3.8254 -3.9614 6.9402 44 1 2.7033 -4.9216 5.9466 45 1 4.5135 -6.5481 5.4726 46 1 4.2396 -6.3897 7.2244 47 1 6.6620 -6.3605 6.6958 48 1 6.1376 -4.8021 7.3780 49 1 6.4741 -5.4228 4.4085 50 1 7.5966 -4.4628 5.4021 51 1 6.0604 -2.9939 4.1248 52 1 5.7859 -2.8357 5.8765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986269033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:14 Heat of formation + Delta-G solvation = 32.433651 kcal Electronic energy + Delta-G solvation = -30964.425762 eV Core-core repulsion = 26964.704073 eV Total energy + Delta-G solvation = -3999.721689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.72979 -41.14484 -39.38005 -38.75356 -36.05533 -34.24997 -33.53575 -32.39298 -32.01373 -31.61921 -31.24423 -29.82847 -26.93841 -25.64023 -24.50363 -24.02238 -23.63441 -22.81524 -21.92100 -21.72824 -20.46789 -20.22569 -19.51053 -18.49275 -17.92775 -17.43598 -16.92862 -16.46376 -16.25790 -16.03781 -15.83387 -15.28608 -15.14995 -15.04551 -14.80536 -14.65384 -14.55141 -14.24820 -13.98712 -13.86378 -13.78329 -13.54235 -13.44156 -13.29823 -13.20235 -13.06437 -12.70373 -12.58704 -12.34184 -12.28100 -12.12107 -12.05641 -11.83179 -11.82071 -11.56794 -11.51606 -11.39285 -11.23551 -11.15989 -10.94530 -10.23148 -10.05770 -9.68390 -9.33974 -8.02573 -5.36761 0.52459 1.19453 1.38757 1.39322 1.42231 1.46587 1.92936 2.34070 2.47321 3.20521 3.27746 3.46953 3.51104 3.62896 3.68096 3.84891 3.87464 3.92047 4.05030 4.11005 4.19181 4.26056 4.29288 4.31250 4.34452 4.43988 4.44163 4.47549 4.62237 4.64917 4.70114 4.73609 4.79569 4.88443 4.92361 4.99535 5.00097 5.03992 5.16306 5.17031 5.17426 5.19194 5.24322 5.32718 5.34470 5.35389 5.45256 5.51125 5.76518 5.91535 6.20763 6.44325 6.83829 7.04267 7.12418 7.79057 7.98000 9.18233 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002422 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.538468 B =11556.660925 C =12565.871334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.058 0.942 4 C 0.177 3.823 5 H 0.075 0.925 6 N -0.742 5.742 7 C -0.225 4.225 8 H 0.067 0.933 9 C -0.057 4.057 10 N -0.979 5.979 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.258 1.258 15 C -0.147 4.147 16 C 0.117 3.883 17 N -0.599 5.599 18 C 0.609 3.391 19 O -0.572 6.572 20 C -0.042 4.042 21 C -0.200 4.200 22 C 0.003 3.997 23 N -0.271 5.271 24 C 0.144 3.856 25 C -0.122 4.122 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.114 4.114 29 C -0.125 4.125 30 N -0.267 5.267 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.162 0.838 41 H 0.220 0.780 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -14.814 33.281 36.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 H 0.076 0.924 4 C 0.067 3.933 5 H 0.092 0.908 6 N -0.385 5.385 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.249 4.249 10 N -0.629 5.629 11 Si 0.774 3.226 12 H -0.206 1.206 13 H -0.222 1.222 14 H -0.183 1.183 15 C -0.188 4.188 16 C -0.005 4.005 17 N -0.331 5.331 18 C 0.398 3.602 19 O -0.451 6.451 20 C -0.200 4.200 21 C -0.228 4.228 22 C -0.140 4.140 23 N -0.059 5.059 24 C 0.044 3.956 25 C -0.161 4.161 26 C -0.150 4.150 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.163 4.163 30 N -0.104 5.104 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.197 0.803 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.180 0.820 41 H 0.237 0.763 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.074 0.926 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.148 -15.214 32.494 36.402 hybrid contribution -0.114 1.975 -0.150 1.984 sum 6.033 -13.239 32.343 35.465 Atomic orbital electron populations 1.21970 0.93854 1.02472 1.02185 1.21761 0.95301 0.95740 0.84735 0.92355 1.21373 0.95084 0.90824 0.85994 0.90752 1.42688 1.81192 1.11859 1.02726 1.18993 1.36420 0.97632 0.82503 0.91535 1.25372 1.02667 1.01885 0.94984 1.69850 1.56408 1.36629 1.00038 0.85547 0.78477 0.81083 0.77510 1.20571 1.22204 1.18342 1.23391 0.99051 1.01484 0.94847 1.22456 0.95788 0.87371 0.94927 1.48388 1.51645 1.28906 1.04151 1.16960 0.79403 0.83197 0.80657 1.90730 1.42111 1.28605 1.83654 1.21678 1.06083 0.97475 0.94727 1.21944 1.06556 1.03148 0.91138 1.23257 0.99914 0.92821 0.98024 1.46192 1.35888 1.21444 1.02351 1.21973 0.89876 0.82027 1.01687 1.21931 1.00517 0.98218 0.95402 1.21500 0.94574 0.95850 1.03113 1.21603 0.95909 1.00869 0.97538 1.21515 0.99181 0.95390 0.99097 1.21932 0.92163 0.99645 1.02582 1.73574 1.15497 1.11937 1.09367 0.91715 0.92491 0.91470 0.80291 0.93323 0.89455 0.91780 0.88629 0.90442 0.81990 0.76320 0.87713 0.89140 0.90863 0.91450 0.89667 0.90681 0.91069 0.91418 0.90681 0.92643 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.09 71.98 0.65 -4.36 16 2 C 0.13 4.68 3.21 45.34 0.15 4.83 16 3 H 0.06 2.32 7.71 -2.39 -0.02 2.30 16 4 C 0.18 6.80 3.14 46.18 0.15 6.94 16 5 H 0.07 2.90 7.80 -2.39 -0.02 2.89 16 6 N -0.74 -34.82 5.03 -317.31 -1.60 -36.41 16 7 C -0.22 -12.58 10.44 84.04 0.88 -11.70 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 10 N -0.98 -62.35 13.97 21.65 0.30 -62.04 16 11 Si 0.95 46.29 27.74 68.60 1.90 48.19 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 14 H -0.26 -11.77 6.51 99.48 0.65 -11.12 16 15 C -0.15 -4.88 6.77 31.98 0.22 -4.66 16 16 C 0.12 3.39 6.15 86.85 0.53 3.92 16 17 N -0.60 -20.04 3.07 -791.57 -2.43 -22.47 16 18 C 0.61 21.28 7.65 86.75 0.66 21.94 16 19 O -0.57 -23.09 15.97 -3.94 -0.06 -23.16 16 20 C -0.04 -1.19 6.97 42.46 0.30 -0.90 16 21 C -0.20 -4.53 10.81 22.41 0.24 -4.29 16 22 C 0.00 0.04 10.54 83.54 0.88 0.92 16 23 N -0.27 -4.64 3.22 -327.38 -1.05 -5.69 16 24 C 0.14 1.50 3.07 44.99 0.14 1.64 16 25 C -0.12 -0.64 4.82 30.60 0.15 -0.49 16 26 C -0.11 -0.37 5.92 30.59 0.18 -0.19 16 27 C -0.12 -0.41 5.92 30.59 0.18 -0.23 16 28 C -0.11 -0.69 5.92 30.61 0.18 -0.51 16 29 C -0.12 -1.17 5.53 30.61 0.17 -1.00 16 30 N -0.27 -6.55 9.10 -48.17 -0.44 -6.99 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.02 6.90 -2.38 -0.02 2.00 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.36 16.93 5.42 -92.71 -0.50 16.42 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.63 6.21 -2.38 -0.01 2.62 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.22 1.23 7.16 -2.91 -0.02 1.21 16 42 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.09 0.23 7.05 -2.39 -0.02 0.21 16 44 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 51 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -74.49 405.07 3.09 -71.40 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.34 Total: 28.20 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.12 Total: 8.97 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -5.21 Total: -133.61 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.16 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal Total: -74.49 3.09 -71.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986269033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.830 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds