Wall clock time and date at job start Wed Apr 1 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99942 * 2 1 4 4 C 1.54324 * 109.87999 * 121.09560 * 2 1 3 5 5 H 1.09000 * 110.71874 * 260.14726 * 4 2 1 6 6 N 1.46496 * 110.72137 * 23.24838 * 4 2 1 7 7 C 1.36945 * 119.99718 * 202.55765 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55159 * 103.09883 * 141.69766 * 4 2 1 16 16 C 1.54913 * 101.58256 * 324.40964 * 15 4 2 17 17 N 1.47424 * 104.83373 * 37.00666 * 16 15 4 18 18 C 1.34776 * 125.64632 * 155.82799 * 17 16 15 19 19 O 1.21569 * 119.99889 * 180.02562 * 18 17 16 20 20 C 1.47709 * 119.99941 * 0.03109 * 18 17 16 21 21 C 1.41506 * 126.51412 * 179.70727 * 20 18 17 22 22 C 1.35367 * 105.50176 * 179.90554 * 21 20 18 23 23 N 1.35042 * 107.22673 * 0.35498 * 22 21 20 24 24 C 1.46495 * 124.88256 * 179.76557 * 23 22 21 25 25 C 1.53004 * 109.47359 * 34.97566 * 24 23 22 26 26 C 1.52993 * 109.47294 * 179.97438 * 25 24 23 27 27 C 1.53001 * 109.46975 * 60.00209 * 26 25 24 28 28 C 1.52995 * 109.47337 * 299.99954 * 27 26 25 29 29 C 1.53001 * 109.47176 * 274.97611 * 24 23 22 30 30 N 1.28468 * 110.23215 * 359.76846 * 23 22 21 31 31 H 1.08998 * 109.46878 * 298.90559 * 1 2 3 32 32 H 1.09002 * 109.47576 * 58.90168 * 1 2 3 33 33 H 1.08995 * 109.47363 * 178.90733 * 1 2 3 34 34 H 0.96996 * 120.00499 * 22.55496 * 6 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00352 * 82.48071 * 15 4 2 37 37 H 1.09001 * 111.00328 * 206.29568 * 15 4 2 38 38 H 1.09004 * 110.36493 * 155.85234 * 16 15 4 39 39 H 1.08997 * 110.36203 * 278.17112 * 16 15 4 40 40 H 1.08003 * 127.24810 * 0.02562 * 21 20 18 41 41 H 1.07992 * 126.38487 * 180.09093 * 22 21 20 42 42 H 1.09002 * 109.47076 * 154.97443 * 24 23 22 43 43 H 1.09002 * 109.47354 * 300.00292 * 25 24 23 44 44 H 1.09000 * 109.46726 * 60.00096 * 25 24 23 45 45 H 1.09002 * 109.47393 * 300.00555 * 26 25 24 46 46 H 1.08995 * 109.47076 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.47237 * 179.97438 * 27 26 25 48 48 H 1.09002 * 109.47255 * 59.99738 * 27 26 25 49 49 H 1.08999 * 109.47489 * 300.00198 * 28 27 26 50 50 H 1.08993 * 109.47768 * 179.97438 * 28 27 26 51 51 H 1.08990 * 109.47243 * 300.00295 * 29 24 23 52 52 H 1.09002 * 109.46777 * 60.00173 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3500 -0.0461 2.0212 6 7 1.0471 -1.6855 1.7474 7 6 1.0905 -2.1006 3.0517 8 1 1.8678 -1.7382 3.7081 9 6 0.1355 -2.9870 3.5301 10 7 -0.8116 -3.4290 2.7299 11 14 0.1951 -3.5537 5.3090 12 1 -0.9276 -4.4906 5.5680 13 1 1.4850 -4.2430 5.5660 14 1 0.0748 -2.3775 6.2075 15 6 3.2896 -1.5141 0.6968 16 6 2.8200 -1.8831 -0.7326 17 7 2.0351 -0.7198 -1.1841 18 6 1.8161 -0.3702 -2.4672 19 8 1.1506 0.6143 -2.7238 20 6 2.3846 -1.1832 -3.5615 21 6 2.2378 -0.9479 -4.9491 22 6 2.9269 -1.9405 -5.5593 23 7 3.4449 -2.7232 -4.5884 24 6 4.2597 -3.9182 -4.8211 25 6 5.1331 -3.7067 -6.0595 26 6 5.9845 -4.9545 -6.3022 27 6 5.0699 -6.1609 -6.5231 28 6 4.1965 -6.3724 -5.2849 29 6 3.3447 -5.1243 -5.0423 30 7 3.1202 -2.2692 -3.4313 31 1 -0.3633 0.4967 0.8996 32 1 -0.3634 0.5308 -0.8800 33 1 -0.3634 -1.0274 -0.0196 34 1 0.3492 -2.0112 1.1578 35 1 -1.4787 -4.0488 3.0642 36 1 4.1667 -0.8678 0.6652 37 1 3.4874 -2.4090 1.2870 38 1 3.6788 -2.0381 -1.3858 39 1 2.1951 -2.7758 -0.7078 40 1 1.6925 -0.1443 -5.4218 41 1 3.0377 -2.0826 -6.6241 42 1 4.8957 -4.0987 -3.9545 43 1 4.4971 -3.5261 -6.9261 44 1 5.7850 -2.8475 -5.9018 45 1 6.6205 -5.1346 -5.4354 46 1 6.6063 -4.8040 -7.1846 47 1 5.6764 -7.0498 -6.6965 48 1 4.4339 -5.9808 -7.3898 49 1 4.8324 -6.5526 -4.4181 50 1 3.5446 -7.2316 -5.4424 51 1 2.7225 -5.2749 -4.1602 52 1 2.7087 -4.9437 -5.9090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986269037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:25 Heat of formation + Delta-G solvation = 54.526047 kcal Electronic energy + Delta-G solvation = -31321.035320 eV Core-core repulsion = 27322.271629 eV Total energy + Delta-G solvation = -3998.763691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.73452 -39.62990 -38.78058 -37.19435 -33.91230 -33.35321 -31.62280 -31.41077 -30.68331 -30.61649 -29.47098 -28.44201 -25.07963 -24.47575 -23.51050 -23.30990 -22.82045 -21.65092 -21.08407 -19.92744 -19.52282 -18.53489 -17.51766 -17.38126 -16.44061 -16.12161 -15.85013 -15.48500 -14.80495 -14.74477 -14.62595 -14.42669 -13.86980 -13.73651 -13.66689 -13.41879 -13.14067 -13.08921 -12.89878 -12.76431 -12.56625 -12.47527 -12.15432 -11.82272 -11.70253 -11.60978 -11.26299 -11.16585 -10.97461 -10.96793 -10.89436 -10.79196 -10.74169 -10.52703 -10.43895 -10.17334 -9.98055 -9.60264 -9.52847 -9.22192 -9.02484 -8.89035 -8.13159 -6.96183 -5.76342 -3.05487 1.73089 2.18087 2.30813 3.39648 3.44345 3.49020 3.49833 3.72533 3.94559 4.13630 4.33593 4.44251 4.58748 4.59153 4.65942 4.67172 4.83976 4.86236 4.90904 5.05215 5.12515 5.27305 5.28770 5.42733 5.44215 5.49125 5.55242 5.56579 5.59814 5.66989 5.69418 5.72960 5.76823 5.77836 5.82523 5.87903 5.90581 5.99855 6.17731 6.26850 6.47948 6.48526 6.54845 6.65896 6.71366 6.76135 6.89736 6.99164 7.12004 7.70604 7.90295 8.02123 8.42095 8.57206 9.53437 10.10059 10.45339 11.45942 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011714 B = 0.002795 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.672225 B =10016.612462 C =11618.657530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 H 0.072 0.928 4 C 0.171 3.829 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.907 3.093 12 H -0.292 1.292 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.161 4.161 16 C 0.112 3.888 17 N -0.595 5.595 18 C 0.612 3.388 19 O -0.543 6.543 20 C -0.008 4.008 21 C -0.181 4.181 22 C -0.023 4.023 23 N -0.281 5.281 24 C 0.150 3.850 25 C -0.128 4.128 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.116 4.116 29 C -0.130 4.130 30 N -0.252 5.252 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.159 0.841 41 H 0.176 0.824 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.240 -3.192 -21.791 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 H 0.090 0.910 4 C 0.059 3.941 5 H 0.086 0.914 6 N -0.356 5.356 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.738 3.262 12 H -0.218 1.218 13 H -0.213 1.213 14 H -0.213 1.213 15 C -0.202 4.202 16 C -0.011 4.011 17 N -0.327 5.327 18 C 0.399 3.601 19 O -0.420 6.420 20 C -0.168 4.168 21 C -0.209 4.209 22 C -0.165 4.165 23 N -0.068 5.068 24 C 0.050 3.950 25 C -0.166 4.166 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.154 4.154 29 C -0.169 4.169 30 N -0.087 5.087 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.177 0.823 41 H 0.193 0.807 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.096 0.904 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.393 -3.495 -21.011 25.707 hybrid contribution -0.582 -0.121 0.125 0.608 sum 13.811 -3.617 -20.886 25.299 Atomic orbital electron populations 1.21917 0.94184 1.02939 1.01691 1.22090 0.95427 0.95515 0.84492 0.91000 1.21202 0.89205 0.91640 0.92008 0.91426 1.42569 1.31039 1.51656 1.10383 1.19195 1.09634 1.21115 0.87300 0.91119 1.24737 0.97813 1.00241 0.97927 1.69660 1.17144 1.36362 1.34743 0.86272 0.76856 0.78198 0.84852 1.21799 1.21316 1.21271 1.23531 0.99031 1.02171 0.95481 1.22374 0.95111 0.88096 0.95492 1.48572 1.51184 1.28567 1.04416 1.16513 0.79958 0.83363 0.80306 1.90747 1.40763 1.27349 1.83138 1.21984 1.03862 0.96293 0.94665 1.21734 1.05128 1.01962 0.92076 1.22692 1.02531 0.94901 0.96390 1.45788 1.37218 1.20856 1.02980 1.21617 0.91563 0.81345 1.00510 1.21917 0.98509 0.99596 0.96609 1.21497 0.97683 0.93601 1.02520 1.21613 0.98203 0.98156 0.98206 1.21517 0.98440 0.96947 0.98538 1.21976 0.98079 0.93437 1.03406 1.73716 1.15580 1.11893 1.07552 0.91394 0.92647 0.91602 0.77481 0.93442 0.92304 0.89584 0.90179 0.91435 0.82299 0.80708 0.87345 0.90643 0.90656 0.91263 0.90941 0.91394 0.91683 0.91228 0.90951 0.90414 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.48 37.16 0.32 -2.70 16 2 C 0.13 2.44 3.45 -66.70 -0.23 2.21 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.17 3.43 3.46 -66.10 -0.23 3.20 16 5 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 6 N -0.71 -17.52 4.61 -51.65 -0.24 -17.75 16 7 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 11 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 C -0.16 -2.85 6.77 -24.58 -0.17 -3.01 16 16 C 0.11 1.97 6.13 -2.53 -0.02 1.96 16 17 N -0.59 -11.07 3.08 -163.82 -0.50 -11.58 16 18 C 0.61 11.64 7.66 -12.39 -0.09 11.55 16 19 O -0.54 -11.46 16.00 5.31 0.08 -11.37 16 20 C -0.01 -0.13 6.97 -82.76 -0.58 -0.71 16 21 C -0.18 -2.43 10.81 -39.36 -0.43 -2.86 16 22 C -0.02 -0.24 10.54 -17.16 -0.18 -0.42 16 23 N -0.28 -3.18 3.22 -54.83 -0.18 -3.36 16 24 C 0.15 1.20 3.07 -67.93 -0.21 0.99 16 25 C -0.13 -0.70 4.81 -26.73 -0.13 -0.83 16 26 C -0.11 -0.49 5.92 -26.73 -0.16 -0.65 16 27 C -0.12 -0.55 5.92 -26.73 -0.16 -0.70 16 28 C -0.12 -0.65 5.92 -26.71 -0.16 -0.81 16 29 C -0.13 -0.98 5.53 -26.70 -0.15 -1.13 16 30 N -0.25 -3.74 9.09 33.42 0.30 -3.44 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 1.11 6.93 -51.93 -0.36 0.75 16 33 H 0.07 1.47 6.21 -51.93 -0.32 1.15 16 34 H 0.39 10.30 5.58 -40.82 -0.23 10.07 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.08 1.31 6.20 -51.93 -0.32 0.98 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.16 1.96 8.06 -52.48 -0.42 1.53 16 41 H 0.18 1.14 7.16 -52.49 -0.38 0.76 16 42 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.35 7.05 -51.93 -0.37 -0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -32.58 404.40 -10.25 -42.83 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -8.71 Total: 9.59 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.81 Total: -0.98 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.11 Total: -63.29 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.58 -10.25 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986269037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.355 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds