Wall clock time and date at job start Wed Apr 1 2020 04:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.87572 * 2 1 4 4 C 1.54317 * 109.88600 * 238.82097 * 2 1 3 5 5 H 1.09002 * 110.71891 * 336.75671 * 4 2 1 6 6 N 1.46503 * 110.72059 * 100.02660 * 4 2 1 7 7 C 1.36945 * 119.99564 * 205.00059 * 6 4 2 8 8 H 1.08000 * 120.00429 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99215 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99430 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00483 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47014 * 90.00134 * 11 9 7 13 13 H 1.48494 * 109.47349 * 209.99777 * 11 9 7 14 14 H 1.48499 * 109.47108 * 330.00651 * 11 9 7 15 15 C 1.55154 * 102.94485 * 218.39308 * 4 2 1 16 16 C 1.54688 * 101.67903 * 35.33365 * 15 4 2 17 17 N 1.47021 * 109.88096 * 121.00893 * 2 1 3 18 18 C 1.34776 * 125.65224 * 298.32367 * 17 2 1 19 19 O 1.21566 * 119.99914 * 359.97438 * 18 17 2 20 20 C 1.47711 * 120.00023 * 180.02562 * 18 17 2 21 21 C 1.41502 * 126.51792 * 180.02562 * 20 18 17 22 22 C 1.35362 * 105.50571 * 179.97438 * 21 20 18 23 23 C 1.50693 * 126.38810 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47531 * 144.99800 * 23 22 21 25 25 C 1.53000 * 109.47233 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24 28 28 C 1.52997 * 109.46989 * 264.99596 * 23 22 21 29 29 N 1.35031 * 107.22510 * 0.25692 * 22 21 20 30 30 H 0.97008 * 124.88347 * 179.71483 * 29 22 21 31 31 N 1.28465 * 110.23187 * 359.55503 * 29 22 21 32 32 H 1.09005 * 109.47189 * 300.44606 * 1 2 3 33 33 H 1.09005 * 109.46988 * 60.44017 * 1 2 3 34 34 H 1.08994 * 109.47101 * 180.44196 * 1 2 3 35 35 H 0.96996 * 119.99857 * 25.00153 * 6 4 2 36 36 H 0.96999 * 119.99845 * 180.02562 * 10 9 7 37 37 H 1.08996 * 111.00646 * 153.57538 * 15 4 2 38 38 H 1.09009 * 111.00213 * 277.42497 * 15 4 2 39 39 H 1.09003 * 110.39565 * 204.36845 * 16 15 4 40 40 H 1.08990 * 110.23782 * 82.11371 * 16 15 4 41 41 H 1.08003 * 127.24952 * 359.95817 * 21 20 18 42 42 H 1.09002 * 109.47624 * 24.99300 * 23 22 21 43 43 H 1.08992 * 109.47063 * 59.99724 * 24 23 22 44 44 H 1.09004 * 109.46733 * 299.99437 * 24 23 22 45 45 H 1.09002 * 109.47398 * 59.99826 * 25 24 23 46 46 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47153 * 300.00319 * 26 25 24 49 49 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 51 51 H 1.09002 * 109.47153 * 299.99998 * 28 23 22 52 52 H 1.09001 * 109.47289 * 60.00082 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2415 5 1 1.3052 -1.4482 -1.6161 6 7 2.4556 0.1928 -2.2877 7 6 2.4583 -0.1998 -3.5997 8 1 2.1648 -1.2052 -3.8632 9 6 2.8385 0.6946 -4.5908 10 7 2.8407 0.3175 -5.8518 11 14 3.3455 2.4338 -4.1352 12 1 4.8088 2.4733 -3.8850 13 1 3.0089 3.3556 -5.2496 14 1 2.6222 2.8550 -2.9086 15 6 3.2876 -1.5152 -0.6901 16 6 2.8191 -1.8752 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.8085 -0.3576 2.4663 19 8 1.1443 0.6290 2.7177 20 6 2.3737 -1.1671 3.5649 21 6 2.2285 -0.9235 4.9512 22 6 2.9111 -1.9172 5.5667 23 6 3.0625 -2.1100 7.0536 24 6 3.0817 -3.6058 7.3747 25 6 3.2348 -3.8015 8.8844 26 6 4.5444 -3.1629 9.3512 27 6 4.5254 -1.6671 9.0301 28 6 4.3724 -1.4715 7.5198 29 7 3.4353 -2.7006 4.5999 30 1 3.9783 -3.4888 4.7581 31 7 3.1088 -2.2540 3.4405 32 1 -0.3634 0.5208 0.8860 33 1 -0.3633 0.5070 -0.8940 34 1 -0.3633 -1.0276 0.0079 35 1 2.7188 1.0959 -2.0511 36 1 3.1067 0.9424 -6.5444 37 1 3.4852 -2.4128 -1.2760 38 1 4.1655 -0.8697 -0.6590 39 1 3.6776 -2.0244 1.3944 40 1 2.1971 -2.7700 0.7183 41 1 1.6872 -0.1147 5.4197 42 1 2.2252 -1.6386 7.5683 43 1 3.9189 -4.0771 6.8601 44 1 2.1484 -4.0607 7.0426 45 1 2.3972 -3.3302 9.3987 46 1 3.2489 -4.8671 9.1131 47 1 4.6539 -3.3026 10.4266 48 1 5.3820 -3.6342 8.8369 49 1 5.4586 -1.2122 9.3622 50 1 3.6878 -1.1958 9.5444 51 1 5.2097 -1.9429 7.0052 52 1 4.3588 -0.4058 7.2912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986370009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:01 Heat of formation + Delta-G solvation = 36.193720 kcal Electronic energy + Delta-G solvation = -30531.194138 eV Core-core repulsion = 26531.635497 eV Total energy + Delta-G solvation = -3999.558640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.95101 -39.78997 -38.90142 -37.35553 -34.23508 -33.11548 -32.23348 -31.51212 -31.24938 -30.86493 -29.66105 -28.90383 -25.28057 -24.58590 -23.56469 -23.12104 -22.57934 -21.76208 -21.29391 -20.41455 -20.05358 -18.55506 -18.04273 -17.55422 -16.69441 -16.18407 -15.79186 -15.52926 -14.88944 -14.80225 -14.72239 -14.57365 -14.39504 -14.01974 -13.84474 -13.65789 -13.30246 -13.04113 -12.78248 -12.74985 -12.67502 -12.62940 -12.20813 -12.02059 -11.88357 -11.76344 -11.72073 -11.31157 -11.15166 -11.10951 -10.91530 -10.82364 -10.72606 -10.68126 -10.56014 -10.28277 -10.02906 -9.83624 -9.59811 -9.52818 -9.16104 -8.92754 -8.37275 -7.30444 -5.79141 -3.15838 1.50709 1.92560 2.60173 3.16263 3.38722 3.42887 3.46721 3.49953 3.95982 4.09633 4.20645 4.33212 4.53339 4.58256 4.63870 4.70032 4.87608 4.89385 4.93523 4.96056 5.08238 5.08510 5.20127 5.25319 5.33167 5.44624 5.45822 5.49241 5.54595 5.55765 5.58177 5.61359 5.67665 5.68939 5.72105 5.79187 5.81654 5.89444 5.92209 6.02712 6.08996 6.21952 6.32069 6.43101 6.59284 6.60386 6.66930 6.81127 6.87019 7.64560 7.77525 7.95646 8.34716 8.39490 9.16523 9.89188 10.08004 11.38645 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.002001 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.624351 B =13990.522417 C =14060.112406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.075 0.925 4 C 0.182 3.818 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.246 4.246 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.157 4.157 16 C 0.103 3.897 17 N -0.596 5.596 18 C 0.612 3.388 19 O -0.538 6.538 20 C 0.000 4.000 21 C -0.176 4.176 22 C 0.021 3.979 23 C -0.016 4.016 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.113 4.113 29 N -0.382 5.382 30 H 0.441 0.559 31 N -0.252 5.252 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.363 0.637 36 H 0.260 0.740 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.160 0.840 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -9.812 32.885 34.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.093 0.907 4 C 0.070 3.930 5 H 0.094 0.906 6 N -0.380 5.380 7 C -0.375 4.375 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.202 1.202 15 C -0.198 4.198 16 C -0.021 4.021 17 N -0.329 5.329 18 C 0.398 3.602 19 O -0.413 6.413 20 C -0.161 4.161 21 C -0.204 4.204 22 C -0.105 4.105 23 C -0.036 4.036 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.151 4.151 29 N -0.095 5.095 30 H 0.286 0.714 31 N -0.088 5.088 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.196 0.804 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.178 0.822 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.654 -10.031 31.997 33.637 hybrid contribution 0.473 1.268 0.785 1.564 sum 3.127 -8.763 32.782 34.077 Atomic orbital electron populations 1.22060 0.94578 1.01955 1.02773 1.21993 0.94788 0.96686 0.84503 0.90696 1.21225 0.94016 0.91275 0.86442 0.90556 1.42705 1.80885 1.11059 1.03358 1.19045 1.38674 0.98977 0.80834 0.88985 1.24657 1.01354 0.97755 0.95077 1.69697 1.53989 1.35270 0.98879 0.86586 0.78670 0.86064 0.77467 1.21052 1.21668 1.20167 1.23513 1.00773 1.01895 0.93585 1.22468 0.95378 0.87730 0.96484 1.48371 1.51276 1.28778 1.04448 1.16518 0.80056 0.83387 0.80236 1.90771 1.40577 1.26823 1.83174 1.21920 1.03469 0.96100 0.94588 1.21478 1.05586 1.01575 0.91734 1.21321 1.01578 0.94905 0.92696 1.19822 0.99896 0.96944 0.86972 1.21632 1.02093 0.94883 0.97073 1.21510 0.98128 1.00846 0.95062 1.21572 0.97724 0.95727 1.00964 1.21553 1.02207 0.96362 0.95599 1.21628 0.96155 1.01310 0.95976 1.43361 1.39563 1.23916 1.02694 0.71427 1.73734 1.15719 1.12694 1.06631 0.91856 0.91048 0.92795 0.80381 0.92998 0.90141 0.90961 0.89597 0.91770 0.82197 0.88409 0.92194 0.91269 0.91537 0.91686 0.91869 0.91993 0.91666 0.91602 0.91947 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.10 37.16 0.34 -2.28 16 2 C 0.12 2.22 3.21 -66.96 -0.21 2.00 16 3 H 0.08 1.45 7.72 -51.92 -0.40 1.05 16 4 C 0.18 3.48 3.14 -66.10 -0.21 3.27 16 5 H 0.08 1.48 7.80 -51.93 -0.41 1.08 16 6 N -0.74 -17.22 5.03 -51.65 -0.26 -17.48 16 7 C -0.25 -6.77 10.44 -15.06 -0.16 -6.92 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 10 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 11 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 15 C -0.16 -2.62 6.76 -24.70 -0.17 -2.79 16 16 C 0.10 1.50 6.14 -2.64 -0.02 1.48 16 17 N -0.60 -9.84 3.07 -164.31 -0.50 -10.34 16 18 C 0.61 10.37 7.65 -12.39 -0.09 10.27 16 19 O -0.54 -10.42 15.97 5.31 0.08 -10.34 16 20 C 0.00 0.00 6.97 -82.77 -0.58 -0.57 16 21 C -0.18 -2.03 10.73 -39.36 -0.42 -2.45 16 22 C 0.02 0.18 5.92 -82.21 -0.49 -0.31 16 23 C -0.02 -0.09 2.59 -91.78 -0.24 -0.33 16 24 C -0.12 -0.51 4.96 -26.73 -0.13 -0.64 16 25 C -0.12 -0.44 5.92 -26.73 -0.16 -0.60 16 26 C -0.12 -0.46 5.92 -26.73 -0.16 -0.62 16 27 C -0.12 -0.50 5.93 -26.70 -0.16 -0.66 16 28 C -0.11 -0.59 5.19 -26.70 -0.14 -0.73 16 29 N -0.38 -3.25 6.64 33.50 0.22 -3.03 16 30 H 0.44 2.32 8.15 -190.43 -1.55 0.77 16 31 N -0.25 -3.04 9.35 33.42 0.31 -2.72 16 32 H 0.06 1.09 6.88 -51.93 -0.36 0.74 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.36 8.49 5.43 -40.82 -0.22 8.27 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 39 H 0.09 1.19 6.21 -51.93 -0.32 0.87 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.21 7.44 -51.93 -0.39 -0.17 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -33.31 404.74 -11.07 -44.38 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -10.00 Total: 5.89 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.08 Total: -1.75 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.55 Total: -61.71 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.31 -11.07 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986370009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds