Wall clock time and date at job start Wed Apr 1 2020 04:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.87572 * 2 1 4 4 C 1.54317 * 109.88600 * 238.82097 * 2 1 3 5 5 H 1.09002 * 110.71891 * 336.75671 * 4 2 1 6 6 N 1.46503 * 110.72059 * 100.02660 * 4 2 1 7 7 C 1.36945 * 119.99564 * 205.00059 * 6 4 2 8 8 H 1.08000 * 120.00429 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99215 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99430 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00483 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47014 * 90.00134 * 11 9 7 13 13 H 1.48494 * 109.47349 * 209.99777 * 11 9 7 14 14 H 1.48499 * 109.47108 * 330.00651 * 11 9 7 15 15 C 1.55154 * 102.94485 * 218.39308 * 4 2 1 16 16 C 1.54688 * 101.67903 * 35.33365 * 15 4 2 17 17 N 1.47021 * 109.88096 * 121.00893 * 2 1 3 18 18 C 1.34776 * 125.65224 * 298.32367 * 17 2 1 19 19 O 1.21566 * 119.99914 * 359.97438 * 18 17 2 20 20 C 1.47711 * 120.00023 * 180.02562 * 18 17 2 21 21 C 1.41502 * 126.51792 * 180.02562 * 20 18 17 22 22 C 1.35362 * 105.50571 * 179.97438 * 21 20 18 23 23 C 1.50693 * 126.38810 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47531 * 144.99800 * 23 22 21 25 25 C 1.53000 * 109.47233 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24 28 28 C 1.52997 * 109.46989 * 264.99596 * 23 22 21 29 29 N 1.35031 * 107.22510 * 0.25692 * 22 21 20 30 30 H 0.97008 * 124.88347 * 179.71483 * 29 22 21 31 31 N 1.28465 * 110.23187 * 359.55503 * 29 22 21 32 32 H 1.09005 * 109.47189 * 300.44606 * 1 2 3 33 33 H 1.09005 * 109.46988 * 60.44017 * 1 2 3 34 34 H 1.08994 * 109.47101 * 180.44196 * 1 2 3 35 35 H 0.96996 * 119.99857 * 25.00153 * 6 4 2 36 36 H 0.96999 * 119.99845 * 180.02562 * 10 9 7 37 37 H 1.08996 * 111.00646 * 153.57538 * 15 4 2 38 38 H 1.09009 * 111.00213 * 277.42497 * 15 4 2 39 39 H 1.09003 * 110.39565 * 204.36845 * 16 15 4 40 40 H 1.08990 * 110.23782 * 82.11371 * 16 15 4 41 41 H 1.08003 * 127.24952 * 359.95817 * 21 20 18 42 42 H 1.09002 * 109.47624 * 24.99300 * 23 22 21 43 43 H 1.08992 * 109.47063 * 59.99724 * 24 23 22 44 44 H 1.09004 * 109.46733 * 299.99437 * 24 23 22 45 45 H 1.09002 * 109.47398 * 59.99826 * 25 24 23 46 46 H 1.09001 * 109.47194 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47853 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47153 * 300.00319 * 26 25 24 49 49 H 1.09000 * 109.47486 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.46716 * 60.00091 * 27 26 25 51 51 H 1.09002 * 109.47153 * 299.99998 * 28 23 22 52 52 H 1.09001 * 109.47289 * 60.00082 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2415 5 1 1.3052 -1.4482 -1.6161 6 7 2.4556 0.1928 -2.2877 7 6 2.4583 -0.1998 -3.5997 8 1 2.1648 -1.2052 -3.8632 9 6 2.8385 0.6946 -4.5908 10 7 2.8407 0.3175 -5.8518 11 14 3.3455 2.4338 -4.1352 12 1 4.8088 2.4733 -3.8850 13 1 3.0089 3.3556 -5.2496 14 1 2.6222 2.8550 -2.9086 15 6 3.2876 -1.5152 -0.6901 16 6 2.8191 -1.8752 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.8085 -0.3576 2.4663 19 8 1.1443 0.6290 2.7177 20 6 2.3737 -1.1671 3.5649 21 6 2.2285 -0.9235 4.9512 22 6 2.9111 -1.9172 5.5667 23 6 3.0625 -2.1100 7.0536 24 6 3.0817 -3.6058 7.3747 25 6 3.2348 -3.8015 8.8844 26 6 4.5444 -3.1629 9.3512 27 6 4.5254 -1.6671 9.0301 28 6 4.3724 -1.4715 7.5198 29 7 3.4353 -2.7006 4.5999 30 1 3.9783 -3.4888 4.7581 31 7 3.1088 -2.2540 3.4405 32 1 -0.3634 0.5208 0.8860 33 1 -0.3633 0.5070 -0.8940 34 1 -0.3633 -1.0276 0.0079 35 1 2.7188 1.0959 -2.0511 36 1 3.1067 0.9424 -6.5444 37 1 3.4852 -2.4128 -1.2760 38 1 4.1655 -0.8697 -0.6590 39 1 3.6776 -2.0244 1.3944 40 1 2.1971 -2.7700 0.7183 41 1 1.6872 -0.1147 5.4197 42 1 2.2252 -1.6386 7.5683 43 1 3.9189 -4.0771 6.8601 44 1 2.1484 -4.0607 7.0426 45 1 2.3972 -3.3302 9.3987 46 1 3.2489 -4.8671 9.1131 47 1 4.6539 -3.3026 10.4266 48 1 5.3820 -3.6342 8.8369 49 1 5.4586 -1.2122 9.3622 50 1 3.6878 -1.1958 9.5444 51 1 5.2097 -1.9429 7.0052 52 1 4.3588 -0.4058 7.2912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986370009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:00 Heat of formation + Delta-G solvation = 15.974422 kcal Electronic energy + Delta-G solvation = -30532.070912 eV Core-core repulsion = 26531.635497 eV Total energy + Delta-G solvation = -4000.435415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.79866 -41.12913 -39.32328 -38.79144 -36.04762 -33.95290 -33.41870 -32.96469 -32.21125 -31.62556 -31.16571 -29.66580 -26.93143 -25.73981 -24.50489 -24.00096 -23.50479 -22.94608 -22.05861 -21.72779 -20.74919 -19.87255 -19.40994 -18.82875 -17.80088 -17.47417 -16.80158 -16.45245 -16.07670 -16.03975 -15.80082 -15.24404 -15.15748 -15.01395 -14.94646 -14.73917 -14.64106 -14.57599 -14.14249 -13.76510 -13.54372 -13.43557 -13.32203 -13.12600 -13.08028 -13.05720 -12.70183 -12.57894 -12.32803 -12.23310 -12.03652 -12.02537 -11.82170 -11.77678 -11.51726 -11.36496 -11.24675 -11.14282 -11.03861 -10.93918 -10.45545 -9.93974 -9.70397 -9.32831 -8.01876 -5.35964 0.48728 1.08671 1.39377 1.39911 1.47072 1.69955 2.08650 2.31177 2.47984 3.21333 3.29394 3.47053 3.51404 3.63706 3.72335 3.85728 3.87892 4.09248 4.12726 4.20489 4.26778 4.33488 4.35183 4.36319 4.46271 4.53314 4.57290 4.58809 4.60458 4.66585 4.73532 4.77542 4.80748 4.93460 5.01437 5.03846 5.15299 5.19727 5.20235 5.21347 5.23354 5.25776 5.28796 5.35558 5.39474 5.42560 5.44501 5.57565 5.77521 6.08186 6.21511 6.45066 6.78858 7.04921 7.08957 7.80123 7.98790 9.18881 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.002001 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.624351 B =13990.522417 C =14060.112406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.059 0.941 4 C 0.176 3.824 5 H 0.075 0.925 6 N -0.742 5.742 7 C -0.225 4.225 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.979 5.979 11 Si 0.946 3.054 12 H -0.280 1.280 13 H -0.296 1.296 14 H -0.258 1.258 15 C -0.148 4.148 16 C 0.115 3.885 17 N -0.598 5.598 18 C 0.608 3.392 19 O -0.571 6.571 20 C -0.028 4.028 21 C -0.196 4.196 22 C 0.046 3.954 23 C -0.012 4.012 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.110 4.110 29 N -0.361 5.361 30 H 0.458 0.542 31 N -0.258 5.258 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.364 0.636 36 H 0.257 0.743 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.063 0.937 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 -10.942 35.990 37.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 H 0.077 0.923 4 C 0.066 3.934 5 H 0.093 0.907 6 N -0.384 5.384 7 C -0.356 4.356 8 H 0.085 0.915 9 C -0.249 4.249 10 N -0.629 5.629 11 Si 0.774 3.226 12 H -0.206 1.206 13 H -0.223 1.223 14 H -0.183 1.183 15 C -0.189 4.189 16 C -0.008 4.008 17 N -0.330 5.330 18 C 0.397 3.603 19 O -0.449 6.449 20 C -0.188 4.188 21 C -0.224 4.224 22 C -0.080 4.080 23 C -0.032 4.032 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.155 4.155 28 C -0.149 4.149 29 N -0.078 5.078 30 H 0.306 0.694 31 N -0.095 5.095 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.197 0.803 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.178 0.822 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.540 -11.205 35.166 37.077 hybrid contribution 0.200 1.489 -0.056 1.503 sum 3.740 -9.716 35.110 36.621 Atomic orbital electron populations 1.21975 0.93858 1.02525 1.02179 1.21763 0.95298 0.95777 0.84682 0.92336 1.21377 0.95157 0.90858 0.85962 0.90723 1.42679 1.81186 1.11858 1.02711 1.19003 1.36283 0.97688 0.82579 0.91509 1.25374 1.02663 1.01902 0.95002 1.69855 1.56329 1.36682 1.00053 0.85546 0.78483 0.81097 0.77482 1.20579 1.22283 1.18307 1.23366 0.99053 1.01537 0.94936 1.22464 0.95872 0.87460 0.94984 1.48398 1.51437 1.29075 1.04118 1.16926 0.79515 0.83231 0.80666 1.90739 1.42112 1.28362 1.83704 1.21590 1.05482 0.97228 0.94458 1.21615 1.06878 1.02839 0.91055 1.21606 0.99351 0.93226 0.93848 1.19919 1.00361 0.98231 0.84678 1.21634 1.02528 0.93594 0.97726 1.21500 0.98094 1.01283 0.94497 1.21569 0.97794 0.95202 1.01318 1.21537 1.02394 0.96895 0.94693 1.21601 0.95828 1.00612 0.96816 1.43420 1.38546 1.23951 1.01874 0.69377 1.73615 1.15599 1.12164 1.08096 0.92464 0.91533 0.91639 0.80290 0.93361 0.89427 0.91796 0.88261 0.90172 0.82239 0.87933 0.91079 0.91416 0.91527 0.91036 0.91430 0.91834 0.91506 0.91454 0.91779 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.10 71.98 0.66 -4.25 16 2 C 0.13 4.56 3.21 45.34 0.15 4.71 16 3 H 0.06 2.27 7.72 -2.38 -0.02 2.25 16 4 C 0.18 6.63 3.14 46.18 0.15 6.77 16 5 H 0.07 2.86 7.80 -2.39 -0.02 2.84 16 6 N -0.74 -34.36 5.03 -317.33 -1.60 -35.96 16 7 C -0.22 -12.49 10.44 84.03 0.88 -11.61 16 8 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 10 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 11 Si 0.95 46.02 27.74 68.60 1.90 47.92 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 14 H -0.26 -11.65 6.52 99.48 0.65 -11.01 16 15 C -0.15 -4.77 6.76 31.91 0.22 -4.55 16 16 C 0.11 3.14 6.14 86.78 0.53 3.67 16 17 N -0.60 -19.21 3.07 -792.01 -2.43 -21.64 16 18 C 0.61 20.36 7.65 86.75 0.66 21.02 16 19 O -0.57 -22.34 15.97 -3.92 -0.06 -22.40 16 20 C -0.03 -0.77 6.97 42.46 0.30 -0.47 16 21 C -0.20 -4.30 10.73 22.41 0.24 -4.06 16 22 C 0.05 0.68 5.92 41.40 0.24 0.92 16 23 C -0.01 -0.10 2.59 -11.54 -0.03 -0.13 16 24 C -0.12 -0.64 4.96 30.60 0.15 -0.49 16 25 C -0.12 -0.54 5.92 30.59 0.18 -0.36 16 26 C -0.12 -0.59 5.92 30.59 0.18 -0.41 16 27 C -0.12 -0.72 5.93 30.61 0.18 -0.54 16 28 C -0.11 -0.90 5.19 30.61 0.16 -0.74 16 29 N -0.36 -5.15 6.64 -47.94 -0.32 -5.47 16 30 H 0.46 3.22 8.15 -219.98 -1.79 1.42 16 31 N -0.26 -5.64 9.35 -48.18 -0.45 -6.09 16 32 H 0.06 1.98 6.88 -2.38 -0.02 1.96 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.36 16.72 5.43 -92.71 -0.50 16.21 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.10 2.51 6.21 -2.39 -0.01 2.50 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.24 7.44 -2.39 -0.02 0.23 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.32 8.14 -2.39 -0.02 0.31 16 46 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 49 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 51 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -72.69 404.74 1.23 -71.46 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -1.43 Total: 27.39 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.31 Total: 6.58 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -4.49 Total: -130.96 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Total: -72.69 1.23 -71.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986370009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.439 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds