Wall clock time and date at job start Wed Apr 1 2020 04:17:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09008 * 109.87572 * 2 1
4 4 C 1.54317 * 109.88600 * 238.82097 * 2 1 3
5 5 H 1.09002 * 110.71891 * 336.75671 * 4 2 1
6 6 N 1.46503 * 110.72059 * 100.02660 * 4 2 1
7 7 C 1.36945 * 119.99564 * 205.00059 * 6 4 2
8 8 H 1.08000 * 120.00429 * 0.02562 * 7 6 4
9 9 C 1.38813 * 119.99215 * 180.02562 * 7 6 4
10 10 N 1.31620 * 119.99430 * 180.02562 * 9 7 6
11 11 Si 1.86796 * 120.00483 * 359.97438 * 9 7 6
12 12 H 1.48504 * 109.47014 * 90.00134 * 11 9 7
13 13 H 1.48494 * 109.47349 * 209.99777 * 11 9 7
14 14 H 1.48499 * 109.47108 * 330.00651 * 11 9 7
15 15 C 1.55154 * 102.94485 * 218.39308 * 4 2 1
16 16 C 1.54688 * 101.67903 * 35.33365 * 15 4 2
17 17 N 1.47021 * 109.88096 * 121.00893 * 2 1 3
18 18 C 1.34776 * 125.65224 * 298.32367 * 17 2 1
19 19 O 1.21566 * 119.99914 * 359.97438 * 18 17 2
20 20 C 1.47711 * 120.00023 * 180.02562 * 18 17 2
21 21 C 1.41502 * 126.51792 * 180.02562 * 20 18 17
22 22 C 1.35362 * 105.50571 * 179.97438 * 21 20 18
23 23 C 1.50693 * 126.38810 * 180.02562 * 22 21 20
24 24 C 1.53002 * 109.47531 * 144.99800 * 23 22 21
25 25 C 1.53000 * 109.47233 * 180.02562 * 24 23 22
26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 23
27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24
28 28 C 1.52997 * 109.46989 * 264.99596 * 23 22 21
29 29 N 1.35031 * 107.22510 * 0.25692 * 22 21 20
30 30 H 0.97008 * 124.88347 * 179.71483 * 29 22 21
31 31 N 1.28465 * 110.23187 * 359.55503 * 29 22 21
32 32 H 1.09005 * 109.47189 * 300.44606 * 1 2 3
33 33 H 1.09005 * 109.46988 * 60.44017 * 1 2 3
34 34 H 1.08994 * 109.47101 * 180.44196 * 1 2 3
35 35 H 0.96996 * 119.99857 * 25.00153 * 6 4 2
36 36 H 0.96999 * 119.99845 * 180.02562 * 10 9 7
37 37 H 1.08996 * 111.00646 * 153.57538 * 15 4 2
38 38 H 1.09009 * 111.00213 * 277.42497 * 15 4 2
39 39 H 1.09003 * 110.39565 * 204.36845 * 16 15 4
40 40 H 1.08990 * 110.23782 * 82.11371 * 16 15 4
41 41 H 1.08003 * 127.24952 * 359.95817 * 21 20 18
42 42 H 1.09002 * 109.47624 * 24.99300 * 23 22 21
43 43 H 1.08992 * 109.47063 * 59.99724 * 24 23 22
44 44 H 1.09004 * 109.46733 * 299.99437 * 24 23 22
45 45 H 1.09002 * 109.47398 * 59.99826 * 25 24 23
46 46 H 1.09001 * 109.47194 * 180.02562 * 25 24 23
47 47 H 1.08996 * 109.47853 * 180.02562 * 26 25 24
48 48 H 1.09002 * 109.47153 * 300.00319 * 26 25 24
49 49 H 1.09000 * 109.47486 * 180.02562 * 27 26 25
50 50 H 1.09002 * 109.46716 * 60.00091 * 27 26 25
51 51 H 1.09002 * 109.47153 * 299.99998 * 28 23 22
52 52 H 1.09001 * 109.47289 * 60.00082 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0549 -0.7513 -1.2415
5 1 1.3052 -1.4482 -1.6161
6 7 2.4556 0.1928 -2.2877
7 6 2.4583 -0.1998 -3.5997
8 1 2.1648 -1.2052 -3.8632
9 6 2.8385 0.6946 -4.5908
10 7 2.8407 0.3175 -5.8518
11 14 3.3455 2.4338 -4.1352
12 1 4.8088 2.4733 -3.8850
13 1 3.0089 3.3556 -5.2496
14 1 2.6222 2.8550 -2.9086
15 6 3.2876 -1.5152 -0.6901
16 6 2.8191 -1.8752 0.7395
17 7 2.0300 -0.7123 1.1850
18 6 1.8085 -0.3576 2.4663
19 8 1.1443 0.6290 2.7177
20 6 2.3737 -1.1671 3.5649
21 6 2.2285 -0.9235 4.9512
22 6 2.9111 -1.9172 5.5667
23 6 3.0625 -2.1100 7.0536
24 6 3.0817 -3.6058 7.3747
25 6 3.2348 -3.8015 8.8844
26 6 4.5444 -3.1629 9.3512
27 6 4.5254 -1.6671 9.0301
28 6 4.3724 -1.4715 7.5198
29 7 3.4353 -2.7006 4.5999
30 1 3.9783 -3.4888 4.7581
31 7 3.1088 -2.2540 3.4405
32 1 -0.3634 0.5208 0.8860
33 1 -0.3633 0.5070 -0.8940
34 1 -0.3633 -1.0276 0.0079
35 1 2.7188 1.0959 -2.0511
36 1 3.1067 0.9424 -6.5444
37 1 3.4852 -2.4128 -1.2760
38 1 4.1655 -0.8697 -0.6590
39 1 3.6776 -2.0244 1.3944
40 1 2.1971 -2.7700 0.7183
41 1 1.6872 -0.1147 5.4197
42 1 2.2252 -1.6386 7.5683
43 1 3.9189 -4.0771 6.8601
44 1 2.1484 -4.0607 7.0426
45 1 2.3972 -3.3302 9.3987
46 1 3.2489 -4.8671 9.1131
47 1 4.6539 -3.3026 10.4266
48 1 5.3820 -3.6342 8.8369
49 1 5.4586 -1.2122 9.3622
50 1 3.6878 -1.1958 9.5444
51 1 5.2097 -1.9429 7.0052
52 1 4.3588 -0.4058 7.2912
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000986370009.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:00
Heat of formation + Delta-G solvation = 15.974422 kcal
Electronic energy + Delta-G solvation = -30532.070912 eV
Core-core repulsion = 26531.635497 eV
Total energy + Delta-G solvation = -4000.435415 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-43.79866 -41.12913 -39.32328 -38.79144 -36.04762 -33.95290 -33.41870 -32.96469
-32.21125 -31.62556 -31.16571 -29.66580 -26.93143 -25.73981 -24.50489 -24.00096
-23.50479 -22.94608 -22.05861 -21.72779 -20.74919 -19.87255 -19.40994 -18.82875
-17.80088 -17.47417 -16.80158 -16.45245 -16.07670 -16.03975 -15.80082 -15.24404
-15.15748 -15.01395 -14.94646 -14.73917 -14.64106 -14.57599 -14.14249 -13.76510
-13.54372 -13.43557 -13.32203 -13.12600 -13.08028 -13.05720 -12.70183 -12.57894
-12.32803 -12.23310 -12.03652 -12.02537 -11.82170 -11.77678 -11.51726 -11.36496
-11.24675 -11.14282 -11.03861 -10.93918 -10.45545 -9.93974 -9.70397 -9.32831
-8.01876 -5.35964 0.48728 1.08671 1.39377 1.39911 1.47072 1.69955
2.08650 2.31177 2.47984 3.21333 3.29394 3.47053 3.51404 3.63706
3.72335 3.85728 3.87892 4.09248 4.12726 4.20489 4.26778 4.33488
4.35183 4.36319 4.46271 4.53314 4.57290 4.58809 4.60458 4.66585
4.73532 4.77542 4.80748 4.93460 5.01437 5.03846 5.15299 5.19727
5.20235 5.21347 5.23354 5.25776 5.28796 5.35558 5.39474 5.42560
5.44501 5.57565 5.77521 6.08186 6.21511 6.45066 6.78858 7.04921
7.08957 7.80123 7.98790 9.18881
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.025002 B = 0.002001 C = 0.001991
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.624351 B =13990.522417 C =14060.112406
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.129 3.871
3 H 0.059 0.941
4 C 0.176 3.824
5 H 0.075 0.925
6 N -0.742 5.742
7 C -0.225 4.225
8 H 0.067 0.933
9 C -0.058 4.058
10 N -0.979 5.979
11 Si 0.946 3.054
12 H -0.280 1.280
13 H -0.296 1.296
14 H -0.258 1.258
15 C -0.148 4.148
16 C 0.115 3.885
17 N -0.598 5.598
18 C 0.608 3.392
19 O -0.571 6.571
20 C -0.028 4.028
21 C -0.196 4.196
22 C 0.046 3.954
23 C -0.012 4.012
24 C -0.117 4.117
25 C -0.116 4.116
26 C -0.121 4.121
27 C -0.118 4.118
28 C -0.110 4.110
29 N -0.361 5.361
30 H 0.458 0.542
31 N -0.258 5.258
32 H 0.056 0.944
33 H 0.066 0.934
34 H 0.065 0.935
35 H 0.364 0.636
36 H 0.257 0.743
37 H 0.087 0.913
38 H 0.063 0.937
39 H 0.099 0.901
40 H 0.080 0.920
41 H 0.160 0.840
42 H 0.103 0.897
43 H 0.071 0.929
44 H 0.067 0.933
45 H 0.066 0.934
46 H 0.071 0.929
47 H 0.067 0.933
48 H 0.063 0.937
49 H 0.066 0.934
50 H 0.067 0.933
51 H 0.063 0.937
52 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.506 -10.942 35.990 37.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.025 3.975
3 H 0.077 0.923
4 C 0.066 3.934
5 H 0.093 0.907
6 N -0.384 5.384
7 C -0.356 4.356
8 H 0.085 0.915
9 C -0.249 4.249
10 N -0.629 5.629
11 Si 0.774 3.226
12 H -0.206 1.206
13 H -0.223 1.223
14 H -0.183 1.183
15 C -0.189 4.189
16 C -0.008 4.008
17 N -0.330 5.330
18 C 0.397 3.603
19 O -0.449 6.449
20 C -0.188 4.188
21 C -0.224 4.224
22 C -0.080 4.080
23 C -0.032 4.032
24 C -0.155 4.155
25 C -0.154 4.154
26 C -0.159 4.159
27 C -0.155 4.155
28 C -0.149 4.149
29 N -0.078 5.078
30 H 0.306 0.694
31 N -0.095 5.095
32 H 0.075 0.925
33 H 0.085 0.915
34 H 0.084 0.916
35 H 0.197 0.803
36 H 0.066 0.934
37 H 0.106 0.894
38 H 0.082 0.918
39 H 0.117 0.883
40 H 0.098 0.902
41 H 0.178 0.822
42 H 0.121 0.879
43 H 0.089 0.911
44 H 0.086 0.914
45 H 0.085 0.915
46 H 0.090 0.910
47 H 0.086 0.914
48 H 0.082 0.918
49 H 0.085 0.915
50 H 0.085 0.915
51 H 0.082 0.918
52 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 3.540 -11.205 35.166 37.077
hybrid contribution 0.200 1.489 -0.056 1.503
sum 3.740 -9.716 35.110 36.621
Atomic orbital electron populations
1.21975 0.93858 1.02525 1.02179 1.21763 0.95298 0.95777 0.84682
0.92336 1.21377 0.95157 0.90858 0.85962 0.90723 1.42679 1.81186
1.11858 1.02711 1.19003 1.36283 0.97688 0.82579 0.91509 1.25374
1.02663 1.01902 0.95002 1.69855 1.56329 1.36682 1.00053 0.85546
0.78483 0.81097 0.77482 1.20579 1.22283 1.18307 1.23366 0.99053
1.01537 0.94936 1.22464 0.95872 0.87460 0.94984 1.48398 1.51437
1.29075 1.04118 1.16926 0.79515 0.83231 0.80666 1.90739 1.42112
1.28362 1.83704 1.21590 1.05482 0.97228 0.94458 1.21615 1.06878
1.02839 0.91055 1.21606 0.99351 0.93226 0.93848 1.19919 1.00361
0.98231 0.84678 1.21634 1.02528 0.93594 0.97726 1.21500 0.98094
1.01283 0.94497 1.21569 0.97794 0.95202 1.01318 1.21537 1.02394
0.96895 0.94693 1.21601 0.95828 1.00612 0.96816 1.43420 1.38546
1.23951 1.01874 0.69377 1.73615 1.15599 1.12164 1.08096 0.92464
0.91533 0.91639 0.80290 0.93361 0.89427 0.91796 0.88261 0.90172
0.82239 0.87933 0.91079 0.91416 0.91527 0.91036 0.91430 0.91834
0.91506 0.91454 0.91779 0.92137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.91 9.10 71.98 0.66 -4.25 16
2 C 0.13 4.56 3.21 45.34 0.15 4.71 16
3 H 0.06 2.27 7.72 -2.38 -0.02 2.25 16
4 C 0.18 6.63 3.14 46.18 0.15 6.77 16
5 H 0.07 2.86 7.80 -2.39 -0.02 2.84 16
6 N -0.74 -34.36 5.03 -317.33 -1.60 -35.96 16
7 C -0.22 -12.49 10.44 84.03 0.88 -11.61 16
8 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16
9 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16
10 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16
11 Si 0.95 46.02 27.74 68.60 1.90 47.92 16
12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16
13 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16
14 H -0.26 -11.65 6.52 99.48 0.65 -11.01 16
15 C -0.15 -4.77 6.76 31.91 0.22 -4.55 16
16 C 0.11 3.14 6.14 86.78 0.53 3.67 16
17 N -0.60 -19.21 3.07 -792.01 -2.43 -21.64 16
18 C 0.61 20.36 7.65 86.75 0.66 21.02 16
19 O -0.57 -22.34 15.97 -3.92 -0.06 -22.40 16
20 C -0.03 -0.77 6.97 42.46 0.30 -0.47 16
21 C -0.20 -4.30 10.73 22.41 0.24 -4.06 16
22 C 0.05 0.68 5.92 41.40 0.24 0.92 16
23 C -0.01 -0.10 2.59 -11.54 -0.03 -0.13 16
24 C -0.12 -0.64 4.96 30.60 0.15 -0.49 16
25 C -0.12 -0.54 5.92 30.59 0.18 -0.36 16
26 C -0.12 -0.59 5.92 30.59 0.18 -0.41 16
27 C -0.12 -0.72 5.93 30.61 0.18 -0.54 16
28 C -0.11 -0.90 5.19 30.61 0.16 -0.74 16
29 N -0.36 -5.15 6.64 -47.94 -0.32 -5.47 16
30 H 0.46 3.22 8.15 -219.98 -1.79 1.42 16
31 N -0.26 -5.64 9.35 -48.18 -0.45 -6.09 16
32 H 0.06 1.98 6.88 -2.38 -0.02 1.96 16
33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16
34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
35 H 0.36 16.72 5.43 -92.71 -0.50 16.21 16
36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16
37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16
38 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16
39 H 0.10 2.51 6.21 -2.39 -0.01 2.50 16
40 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16
41 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16
42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
43 H 0.07 0.24 7.44 -2.39 -0.02 0.23 16
44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16
45 H 0.07 0.32 8.14 -2.39 -0.02 0.31 16
46 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16
47 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16
48 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16
49 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16
50 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16
51 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
52 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
Total: -1.00 -72.69 404.74 1.23 -71.46
By element:
Atomic # 1 Polarization: 28.82 SS G_CDS: -1.43 Total: 27.39 kcal
Atomic # 6 Polarization: 1.28 SS G_CDS: 5.31 Total: 6.58 kcal
Atomic # 7 Polarization: -126.47 SS G_CDS: -4.49 Total: -130.96 kcal
Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal
Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal
Total: -72.69 1.23 -71.46 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000986370009.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.439 kcal
(2) G-P(sol) polarization free energy of solvation -72.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds