Wall clock time and date at job start Wed Apr 1 2020 04:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.87266 * 2 1 4 4 C 1.54319 * 110.01268 * 238.89780 * 2 1 3 5 5 H 1.08993 * 110.72512 * 144.34337 * 4 2 1 6 6 N 1.46498 * 110.71965 * 21.24142 * 4 2 1 7 7 C 1.36937 * 119.99871 * 155.00358 * 6 4 2 8 8 H 1.07998 * 120.00456 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00157 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99647 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00353 * 179.97438 * 9 7 6 12 12 H 1.48511 * 109.46639 * 89.99734 * 11 9 7 13 13 H 1.48498 * 109.47316 * 210.00016 * 11 9 7 14 14 H 1.48499 * 109.46984 * 330.00375 * 11 9 7 15 15 C 1.55166 * 102.94180 * 262.70354 * 4 2 1 16 16 C 1.55126 * 101.48224 * 324.33372 * 15 4 2 17 17 N 1.47028 * 109.88214 * 121.00841 * 2 1 3 18 18 C 1.34780 * 125.64964 * 300.59779 * 17 2 1 19 19 O 1.21573 * 119.99553 * 359.97438 * 18 17 2 20 20 C 1.47700 * 119.99771 * 179.97438 * 18 17 2 21 21 C 1.41503 * 126.51774 * 180.02562 * 20 18 17 22 22 C 1.35362 * 105.50632 * 179.97438 * 21 20 18 23 23 C 1.50703 * 126.38762 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46912 * 94.99945 * 23 22 21 25 25 C 1.53001 * 109.46886 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.46963 * 299.99499 * 25 24 23 27 27 C 1.52997 * 109.47092 * 60.00194 * 26 25 24 28 28 C 1.53002 * 109.46966 * 214.99857 * 23 22 21 29 29 N 1.35033 * 107.22849 * 0.22583 * 22 21 20 30 30 H 0.97004 * 124.88823 * 179.77551 * 29 22 21 31 31 N 1.28472 * 110.23039 * 359.60971 * 29 22 21 32 32 H 1.09001 * 109.47117 * 300.44345 * 1 2 3 33 33 H 1.08998 * 109.46887 * 60.43962 * 1 2 3 34 34 H 1.08997 * 109.47305 * 180.44452 * 1 2 3 35 35 H 0.97001 * 120.00267 * 335.00348 * 6 4 2 36 36 H 0.96999 * 119.99796 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.99905 * 82.57017 * 15 4 2 38 38 H 1.08996 * 111.00540 * 206.38489 * 15 4 2 39 39 H 1.09001 * 110.49390 * 278.44949 * 16 15 4 40 40 H 1.09005 * 110.34224 * 156.06161 * 16 15 4 41 41 H 1.08007 * 127.24620 * 359.97438 * 21 20 18 42 42 H 1.09002 * 109.47152 * 334.99716 * 23 22 21 43 43 H 1.09001 * 109.47194 * 299.99742 * 24 23 22 44 44 H 1.08992 * 109.47399 * 59.99914 * 24 23 22 45 45 H 1.09000 * 109.47437 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47508 * 59.99571 * 25 24 23 47 47 H 1.09002 * 109.47067 * 300.00341 * 26 25 24 48 48 H 1.09000 * 109.47312 * 180.02562 * 26 25 24 49 49 H 1.09001 * 109.47375 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.47497 * 59.99850 * 27 26 25 51 51 H 1.09002 * 109.47075 * 299.99352 * 28 23 22 52 52 H 1.08996 * 109.47407 * 60.00310 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 1 2.9684 -0.2810 -1.6161 6 7 1.0355 -0.8013 -2.2892 7 6 1.4052 -0.9370 -3.6008 8 1 2.4507 -1.0050 -3.8629 9 6 0.4363 -0.9860 -4.5936 10 7 -0.8378 -0.9026 -4.2743 11 14 0.9407 -1.1703 -6.3827 12 1 1.0149 -2.6124 -6.7299 13 1 -0.0623 -0.5030 -7.2511 14 1 2.2704 -0.5424 -6.5893 15 6 2.3575 -2.1681 -0.6900 16 6 2.8643 -1.8432 0.7397 17 7 2.0300 -0.7123 1.1850 18 6 1.7729 -0.3825 2.4663 19 8 1.0727 0.5790 2.7177 20 6 2.3420 -1.1893 3.5649 21 6 2.1626 -0.9696 4.9512 22 6 2.8639 -1.9502 5.5668 23 6 2.9936 -2.1582 7.0537 24 6 1.9466 -3.1718 7.5200 25 6 2.0778 -3.3825 9.0297 26 6 3.4773 -3.9106 9.3512 27 6 4.5243 -2.8972 8.8849 28 6 4.3932 -2.6865 7.3746 29 7 3.4304 -2.7039 4.6001 30 1 3.9938 -3.4775 4.7584 31 7 3.1130 -2.2511 3.4405 32 1 -0.3633 0.5207 0.8860 33 1 -0.3633 0.5070 -0.8939 34 1 -0.3634 -1.0276 0.0080 35 1 0.0965 -0.7398 -2.0540 36 1 -1.5149 -0.9364 -4.9680 37 1 1.4521 -2.7741 -0.6589 38 1 3.1340 -2.6594 -1.2763 39 1 3.9148 -1.5533 0.7155 40 1 2.7218 -2.7015 1.3964 41 1 1.5871 -0.1848 5.4197 42 1 2.8362 -1.2103 7.5683 43 1 0.9495 -2.7954 7.2914 44 1 2.1039 -4.1196 7.0054 45 1 1.3322 -4.1049 9.3620 46 1 1.9201 -2.4345 9.5441 47 1 3.6349 -4.8586 8.8369 48 1 3.5707 -4.0612 10.4267 49 1 5.5215 -3.2735 9.1134 50 1 4.3668 -1.9491 9.3991 51 1 4.5505 -3.6345 6.8601 52 1 5.1391 -1.9645 7.0424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986370010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:06 Heat of formation + Delta-G solvation = 38.931392 kcal Electronic energy + Delta-G solvation = -30553.256977 eV Core-core repulsion = 26553.817051 eV Total energy + Delta-G solvation = -3999.439926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.89269 -39.70830 -38.86600 -37.27729 -34.14025 -33.05897 -32.16080 -31.42693 -31.17999 -30.55972 -29.26977 -28.57556 -25.08950 -24.58308 -23.60094 -23.15282 -22.97932 -21.88432 -21.24111 -20.37022 -19.30302 -18.36366 -17.98158 -17.45384 -16.64876 -16.01244 -15.51084 -15.30049 -15.19017 -14.76999 -14.68251 -14.58925 -14.33887 -13.98323 -13.78016 -13.56023 -13.24393 -13.02590 -12.78443 -12.71761 -12.61594 -12.34670 -12.00144 -11.88390 -11.69323 -11.68132 -11.50113 -11.18035 -11.07435 -10.92579 -10.86130 -10.78492 -10.66097 -10.60421 -10.37147 -10.15574 -9.93622 -9.75688 -9.56278 -9.46157 -9.10904 -8.89732 -8.26126 -6.97596 -5.77737 -3.07068 1.57048 1.98623 2.65907 3.26805 3.43748 3.49109 3.50790 3.58584 4.00091 4.13122 4.23773 4.39948 4.56786 4.58951 4.67338 4.73376 4.90920 4.94248 4.96744 5.03495 5.11394 5.22463 5.27148 5.37289 5.48137 5.50060 5.52244 5.55483 5.58082 5.61617 5.68466 5.70316 5.71369 5.75615 5.82772 5.83902 5.92705 5.97263 6.15876 6.21103 6.29656 6.32896 6.45782 6.64706 6.67391 6.77206 6.85003 6.94935 7.07347 7.70084 7.71677 7.87994 8.40460 8.45140 9.52363 10.08213 10.43517 11.44763 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.001909 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.570931 B =14664.351853 C =14991.687330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.072 0.928 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.155 4.155 16 C 0.102 3.898 17 N -0.595 5.595 18 C 0.611 3.389 19 O -0.537 6.537 20 C 0.001 3.999 21 C -0.176 4.176 22 C 0.020 3.980 23 C -0.016 4.016 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.119 4.119 29 N -0.382 5.382 30 H 0.441 0.559 31 N -0.253 5.253 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.391 0.609 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.160 0.840 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 -6.590 29.153 31.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.090 0.910 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.359 5.359 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.196 4.196 16 C -0.022 4.022 17 N -0.328 5.328 18 C 0.397 3.603 19 O -0.413 6.413 20 C -0.160 4.160 21 C -0.204 4.204 22 C -0.106 4.106 23 C -0.036 4.036 24 C -0.151 4.151 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.155 4.155 28 C -0.157 4.157 29 N -0.096 5.096 30 H 0.285 0.715 31 N -0.089 5.089 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.178 0.822 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.231 -6.672 28.322 31.190 hybrid contribution -0.062 -0.199 -0.330 0.390 sum 11.169 -6.871 27.992 30.911 Atomic orbital electron populations 1.22004 0.94490 1.02400 1.02772 1.21915 0.95475 0.95822 0.84364 0.90982 1.21188 0.93180 0.92182 0.87289 0.91658 1.42648 1.04543 1.87008 1.01714 1.19259 0.92552 1.42423 0.83128 0.91059 1.24757 0.95254 1.02760 0.98050 1.69663 0.98918 1.57099 1.32222 0.86173 0.77298 0.77551 0.85034 1.21759 1.21789 1.20743 1.23605 1.01537 1.01070 0.93419 1.22533 0.93880 0.89065 0.96676 1.48409 1.49177 1.30687 1.04513 1.16514 0.80249 0.83287 0.80257 1.90770 1.38954 1.28415 1.83183 1.21963 1.02700 0.96657 0.94643 1.21481 1.05259 1.01861 0.91766 1.21317 1.01090 0.95514 0.92675 1.19819 0.95910 1.00866 0.87008 1.21615 0.98866 0.98643 0.95938 1.21544 0.96978 1.01561 0.95635 1.21572 0.94771 0.98698 1.00937 1.21518 0.99098 0.99845 0.95073 1.21642 0.96019 1.00977 0.97052 1.43362 1.38339 1.25199 1.02714 0.71491 1.73742 1.16082 1.12461 1.06569 0.92070 0.90120 0.92612 0.77139 0.93427 0.90860 0.90746 0.91955 0.89718 0.82195 0.88430 0.91068 0.91952 0.91668 0.91606 0.92003 0.91888 0.91719 0.91540 0.92206 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 7.93 37.16 0.29 -2.85 16 2 C 0.13 2.42 3.47 -66.95 -0.23 2.19 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 4 C 0.17 3.49 3.48 -66.09 -0.23 3.26 16 5 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 6 N -0.72 -17.73 4.95 -51.65 -0.26 -17.99 16 7 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 10 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 11 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.15 -2.72 6.79 -24.46 -0.17 -2.89 16 16 C 0.10 1.56 6.17 -2.41 -0.01 1.55 16 17 N -0.60 -10.32 3.08 -164.03 -0.51 -10.83 16 18 C 0.61 10.81 7.64 -12.39 -0.09 10.71 16 19 O -0.54 -10.83 15.81 5.30 0.08 -10.74 16 20 C 0.00 0.02 6.97 -82.77 -0.58 -0.56 16 21 C -0.18 -2.12 10.73 -39.36 -0.42 -2.54 16 22 C 0.02 0.18 5.92 -82.21 -0.49 -0.31 16 23 C -0.02 -0.09 2.59 -91.77 -0.24 -0.33 16 24 C -0.11 -0.63 5.19 -26.73 -0.14 -0.76 16 25 C -0.12 -0.54 5.92 -26.73 -0.16 -0.69 16 26 C -0.12 -0.49 5.92 -26.73 -0.16 -0.65 16 27 C -0.12 -0.47 5.92 -26.71 -0.16 -0.62 16 28 C -0.12 -0.54 4.96 -26.70 -0.13 -0.67 16 29 N -0.38 -3.43 6.64 33.50 0.22 -3.20 16 30 H 0.44 2.49 8.13 -190.43 -1.55 0.95 16 31 N -0.25 -3.19 9.34 33.42 0.31 -2.87 16 32 H 0.06 1.21 6.73 -51.93 -0.35 0.86 16 33 H 0.08 1.71 6.82 -51.93 -0.35 1.36 16 34 H 0.05 1.13 8.02 -51.93 -0.42 0.71 16 35 H 0.39 10.23 5.08 -40.82 -0.21 10.02 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.24 6.18 -51.93 -0.32 0.92 16 41 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.06 0.23 7.43 -51.93 -0.39 -0.16 16 52 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 403.47 15.07 6.08 6.08 Total: -1.00 -32.57 403.47 -11.41 -43.98 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -9.89 Total: 7.93 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.16 Total: -2.37 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.50 Total: -62.08 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.57 -11.41 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986370010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.909 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds