Wall clock time and date at job start Wed Apr 1 2020 04:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.87266 * 2 1 4 4 C 1.54319 * 110.01268 * 238.89780 * 2 1 3 5 5 H 1.08993 * 110.72512 * 144.34337 * 4 2 1 6 6 N 1.46498 * 110.71965 * 21.24142 * 4 2 1 7 7 C 1.36937 * 119.99871 * 155.00358 * 6 4 2 8 8 H 1.07998 * 120.00456 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00157 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99647 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00353 * 179.97438 * 9 7 6 12 12 H 1.48511 * 109.46639 * 89.99734 * 11 9 7 13 13 H 1.48498 * 109.47316 * 210.00016 * 11 9 7 14 14 H 1.48499 * 109.46984 * 330.00375 * 11 9 7 15 15 C 1.55166 * 102.94180 * 262.70354 * 4 2 1 16 16 C 1.55126 * 101.48224 * 324.33372 * 15 4 2 17 17 N 1.47028 * 109.88214 * 121.00841 * 2 1 3 18 18 C 1.34780 * 125.64964 * 300.59779 * 17 2 1 19 19 O 1.21573 * 119.99553 * 359.97438 * 18 17 2 20 20 C 1.47700 * 119.99771 * 179.97438 * 18 17 2 21 21 C 1.41503 * 126.51774 * 180.02562 * 20 18 17 22 22 C 1.35362 * 105.50632 * 179.97438 * 21 20 18 23 23 C 1.50703 * 126.38762 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46912 * 94.99945 * 23 22 21 25 25 C 1.53001 * 109.46886 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.46963 * 299.99499 * 25 24 23 27 27 C 1.52997 * 109.47092 * 60.00194 * 26 25 24 28 28 C 1.53002 * 109.46966 * 214.99857 * 23 22 21 29 29 N 1.35033 * 107.22849 * 0.22583 * 22 21 20 30 30 H 0.97004 * 124.88823 * 179.77551 * 29 22 21 31 31 N 1.28472 * 110.23039 * 359.60971 * 29 22 21 32 32 H 1.09001 * 109.47117 * 300.44345 * 1 2 3 33 33 H 1.08998 * 109.46887 * 60.43962 * 1 2 3 34 34 H 1.08997 * 109.47305 * 180.44452 * 1 2 3 35 35 H 0.97001 * 120.00267 * 335.00348 * 6 4 2 36 36 H 0.96999 * 119.99796 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.99905 * 82.57017 * 15 4 2 38 38 H 1.08996 * 111.00540 * 206.38489 * 15 4 2 39 39 H 1.09001 * 110.49390 * 278.44949 * 16 15 4 40 40 H 1.09005 * 110.34224 * 156.06161 * 16 15 4 41 41 H 1.08007 * 127.24620 * 359.97438 * 21 20 18 42 42 H 1.09002 * 109.47152 * 334.99716 * 23 22 21 43 43 H 1.09001 * 109.47194 * 299.99742 * 24 23 22 44 44 H 1.08992 * 109.47399 * 59.99914 * 24 23 22 45 45 H 1.09000 * 109.47437 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47508 * 59.99571 * 25 24 23 47 47 H 1.09002 * 109.47067 * 300.00341 * 26 25 24 48 48 H 1.09000 * 109.47312 * 180.02562 * 26 25 24 49 49 H 1.09001 * 109.47375 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.47497 * 59.99850 * 27 26 25 51 51 H 1.09002 * 109.47075 * 299.99352 * 28 23 22 52 52 H 1.08996 * 109.47407 * 60.00310 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 1 2.9684 -0.2810 -1.6161 6 7 1.0355 -0.8013 -2.2892 7 6 1.4052 -0.9370 -3.6008 8 1 2.4507 -1.0050 -3.8629 9 6 0.4363 -0.9860 -4.5936 10 7 -0.8378 -0.9026 -4.2743 11 14 0.9407 -1.1703 -6.3827 12 1 1.0149 -2.6124 -6.7299 13 1 -0.0623 -0.5030 -7.2511 14 1 2.2704 -0.5424 -6.5893 15 6 2.3575 -2.1681 -0.6900 16 6 2.8643 -1.8432 0.7397 17 7 2.0300 -0.7123 1.1850 18 6 1.7729 -0.3825 2.4663 19 8 1.0727 0.5790 2.7177 20 6 2.3420 -1.1893 3.5649 21 6 2.1626 -0.9696 4.9512 22 6 2.8639 -1.9502 5.5668 23 6 2.9936 -2.1582 7.0537 24 6 1.9466 -3.1718 7.5200 25 6 2.0778 -3.3825 9.0297 26 6 3.4773 -3.9106 9.3512 27 6 4.5243 -2.8972 8.8849 28 6 4.3932 -2.6865 7.3746 29 7 3.4304 -2.7039 4.6001 30 1 3.9938 -3.4775 4.7584 31 7 3.1130 -2.2511 3.4405 32 1 -0.3633 0.5207 0.8860 33 1 -0.3633 0.5070 -0.8939 34 1 -0.3634 -1.0276 0.0080 35 1 0.0965 -0.7398 -2.0540 36 1 -1.5149 -0.9364 -4.9680 37 1 1.4521 -2.7741 -0.6589 38 1 3.1340 -2.6594 -1.2763 39 1 3.9148 -1.5533 0.7155 40 1 2.7218 -2.7015 1.3964 41 1 1.5871 -0.1848 5.4197 42 1 2.8362 -1.2103 7.5683 43 1 0.9495 -2.7954 7.2914 44 1 2.1039 -4.1196 7.0054 45 1 1.3322 -4.1049 9.3620 46 1 1.9201 -2.4345 9.5441 47 1 3.6349 -4.8586 8.8369 48 1 3.5707 -4.0612 10.4267 49 1 5.5215 -3.2735 9.1134 50 1 4.3668 -1.9491 9.3991 51 1 4.5505 -3.6345 6.8601 52 1 5.1391 -1.9645 7.0424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986370010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:05 Heat of formation + Delta-G solvation = 19.896781 kcal Electronic energy + Delta-G solvation = -30554.082380 eV Core-core repulsion = 26553.817051 eV Total energy + Delta-G solvation = -4000.265329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.78979 -41.13086 -39.31882 -38.78331 -35.94253 -33.91692 -33.33702 -32.79752 -32.07233 -31.61170 -30.66672 -29.62198 -26.77884 -25.97858 -24.98382 -24.00781 -23.52046 -23.10243 -22.05123 -21.05605 -20.53593 -19.70117 -19.42557 -18.79180 -17.84436 -17.14773 -16.71939 -16.62823 -16.21418 -16.02672 -15.72591 -15.31511 -15.18457 -15.00978 -14.96031 -14.74121 -14.56426 -14.47761 -13.90872 -13.63486 -13.44491 -13.26789 -13.13439 -13.08718 -13.07307 -12.88203 -12.83496 -12.63628 -12.27958 -12.07366 -12.05145 -12.02747 -11.79533 -11.59811 -11.48458 -11.35676 -11.19854 -11.11236 -11.02329 -10.89621 -10.44440 -9.93321 -9.67678 -9.00497 -7.92167 -5.21427 0.49791 1.09394 1.50097 1.51659 1.60043 1.72675 2.10677 2.32672 2.58963 3.23639 3.40209 3.47846 3.68292 3.74918 3.78992 3.86683 3.94827 4.10214 4.20397 4.21222 4.28460 4.35748 4.37463 4.41458 4.53812 4.55880 4.58404 4.59512 4.61087 4.67423 4.74458 4.78510 4.85833 4.89229 5.04410 5.06705 5.15888 5.19394 5.21652 5.23227 5.26186 5.26433 5.29475 5.37395 5.41440 5.45083 5.49722 5.55906 5.58185 6.09151 6.29005 6.48684 6.80015 7.10580 7.36287 8.09035 8.33850 9.31424 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.001909 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.570931 B =14664.351853 C =14991.687330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 H 0.069 0.931 4 C 0.168 3.832 5 H 0.072 0.928 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.970 5.970 11 Si 0.975 3.025 12 H -0.288 1.288 13 H -0.300 1.300 14 H -0.268 1.268 15 C -0.144 4.144 16 C 0.114 3.886 17 N -0.597 5.597 18 C 0.607 3.393 19 O -0.572 6.572 20 C -0.028 4.028 21 C -0.196 4.196 22 C 0.046 3.954 23 C -0.012 4.012 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.117 4.117 29 N -0.361 5.361 30 H 0.458 0.542 31 N -0.258 5.258 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.380 0.620 36 H 0.250 0.750 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.160 0.840 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.746 -8.142 30.887 34.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.087 0.913 4 C 0.058 3.942 5 H 0.090 0.910 6 N -0.372 5.372 7 C -0.371 4.371 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.621 5.621 11 Si 0.804 3.196 12 H -0.215 1.215 13 H -0.226 1.226 14 H -0.193 1.193 15 C -0.185 4.185 16 C -0.009 4.009 17 N -0.330 5.330 18 C 0.395 3.605 19 O -0.450 6.450 20 C -0.187 4.187 21 C -0.224 4.224 22 C -0.080 4.080 23 C -0.032 4.032 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.153 4.153 28 C -0.155 4.155 29 N -0.078 5.078 30 H 0.306 0.694 31 N -0.095 5.095 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.216 0.784 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.177 0.823 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.949 -8.255 30.088 34.176 hybrid contribution -0.830 0.255 -0.708 1.120 sum 13.119 -8.001 29.379 33.155 Atomic orbital electron populations 1.21821 0.95465 1.01353 1.01574 1.21696 0.94574 0.95870 0.84985 0.91280 1.21365 0.92206 0.94009 0.86643 0.91016 1.42805 1.05000 1.87256 1.02121 1.19674 0.92935 1.40254 0.84189 0.90020 1.25575 0.95327 1.03819 1.02150 1.69831 0.99930 1.59312 1.33026 0.85120 0.77146 0.77318 0.80020 1.21502 1.22643 1.19256 1.23427 1.01306 0.98841 0.94943 1.22555 0.94351 0.88837 0.95115 1.48428 1.49425 1.30996 1.04111 1.16961 0.79679 0.83148 0.80722 1.90736 1.40511 1.30033 1.83740 1.21593 1.04777 0.97887 0.94464 1.21618 1.06545 1.03212 0.91041 1.21613 0.98822 0.93725 0.93881 1.19922 0.97148 1.01479 0.84617 1.21589 0.98049 0.98383 0.96856 1.21527 0.97547 1.01785 0.94649 1.21569 0.94252 0.98716 1.01328 1.21507 0.99476 0.99904 0.94461 1.21645 0.94665 1.01415 0.97756 1.43418 1.37368 1.25127 1.01858 0.69368 1.73615 1.15888 1.11904 1.08079 0.92333 0.92011 0.93543 0.78374 0.94117 0.92670 0.89241 0.89909 0.88456 0.82265 0.87937 0.92210 0.91799 0.91515 0.91452 0.91831 0.91399 0.90987 0.91524 0.91065 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 7.93 71.98 0.57 -5.38 16 2 C 0.13 5.10 3.47 45.34 0.16 5.26 16 3 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 4 C 0.17 6.70 3.48 46.18 0.16 6.86 16 5 H 0.07 2.78 8.09 -2.39 -0.02 2.76 16 6 N -0.73 -36.62 4.95 -317.33 -1.57 -38.19 16 7 C -0.24 -13.01 9.96 84.03 0.84 -12.17 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 10 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 11 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 C -0.14 -4.90 6.79 32.07 0.22 -4.69 16 16 C 0.11 3.29 6.17 86.93 0.54 3.83 16 17 N -0.60 -20.53 3.08 -791.14 -2.44 -22.96 16 18 C 0.61 21.57 7.64 86.74 0.66 22.23 16 19 O -0.57 -23.65 15.81 -3.95 -0.06 -23.72 16 20 C -0.03 -0.80 6.97 42.45 0.30 -0.50 16 21 C -0.20 -4.56 10.73 22.41 0.24 -4.32 16 22 C 0.05 0.73 5.92 41.40 0.25 0.97 16 23 C -0.01 -0.11 2.59 -11.54 -0.03 -0.14 16 24 C -0.11 -1.00 5.19 30.59 0.16 -0.84 16 25 C -0.12 -0.80 5.92 30.60 0.18 -0.62 16 26 C -0.12 -0.64 5.92 30.59 0.18 -0.46 16 27 C -0.12 -0.58 5.92 30.61 0.18 -0.40 16 28 C -0.12 -0.70 4.96 30.61 0.15 -0.55 16 29 N -0.36 -5.50 6.64 -47.93 -0.32 -5.82 16 30 H 0.46 3.57 8.13 -219.99 -1.79 1.78 16 31 N -0.26 -5.97 9.34 -48.18 -0.45 -6.42 16 32 H 0.06 2.41 6.73 -2.39 -0.02 2.40 16 33 H 0.06 2.76 6.82 -2.39 -0.02 2.75 16 34 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16 35 H 0.38 20.59 5.08 -92.71 -0.47 20.12 16 36 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 40 H 0.10 2.63 6.18 -2.38 -0.01 2.62 16 41 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.07 0.28 7.43 -2.39 -0.02 0.26 16 52 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -71.27 403.47 1.36 -69.91 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -1.33 Total: 33.35 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.21 Total: 5.18 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -4.49 Total: -132.70 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.06 Total: -23.72 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -71.27 1.36 -69.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986370010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.810 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds