Wall clock time and date at job start Wed Apr 1 2020 04:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.58383 * 2 1 4 4 C 1.53192 * 109.58887 * 239.71218 * 2 1 3 5 5 H 1.08992 * 109.49805 * 305.56413 * 4 2 1 6 6 N 1.46497 * 109.49563 * 65.62822 * 4 2 1 7 7 C 1.34775 * 120.00178 * 204.93476 * 6 4 2 8 8 O 1.21630 * 119.99867 * 4.79200 * 7 6 4 9 9 C 1.47162 * 120.00453 * 184.78892 * 7 6 4 10 10 C 1.38407 * 126.88143 * 91.15935 * 9 7 6 11 11 C 1.50696 * 127.32231 * 359.97438 * 10 9 7 12 12 C 1.53776 * 113.61896 * 140.86082 * 11 10 9 13 13 C 1.54046 * 86.98841 * 140.01580 * 12 11 10 14 14 C 1.53779 * 87.07766 * 334.56850 * 13 12 11 15 15 C 1.39675 * 105.35818 * 180.24156 * 10 9 7 16 16 N 1.30869 * 107.85971 * 359.60674 * 15 10 9 17 17 N 1.28445 * 110.92730 * 0.41179 * 16 15 10 18 18 C 1.46497 * 125.18820 * 179.71324 * 17 16 15 19 19 C 1.53041 * 109.33654 * 185.59141 * 4 2 1 20 20 C 1.53035 * 109.54134 * 61.32288 * 19 4 2 21 21 C 1.53197 * 109.33632 * 298.67963 * 20 19 4 22 22 N 1.46929 * 108.77359 * 54.62059 * 21 20 19 23 23 C 1.36940 * 120.63119 * 126.41769 * 22 21 20 24 24 H 1.07996 * 119.99529 * 212.09517 * 23 22 21 25 25 C 1.38810 * 120.00137 * 32.09396 * 23 22 21 26 26 N 1.31624 * 119.99984 * 10.46810 * 25 23 22 27 27 Si 1.86799 * 120.00095 * 190.46322 * 25 23 22 28 28 H 1.48494 * 109.46885 * 90.00219 * 27 25 23 29 29 H 1.48498 * 109.47157 * 210.00220 * 27 25 23 30 30 H 1.48499 * 109.46881 * 330.00155 * 27 25 23 31 31 H 1.09008 * 109.46757 * 180.28486 * 1 2 3 32 32 H 1.09000 * 109.47540 * 300.28372 * 1 2 3 33 33 H 1.08993 * 109.46909 * 60.29066 * 1 2 3 34 34 H 0.97004 * 120.00407 * 24.93622 * 6 4 2 35 35 H 1.08997 * 112.84853 * 9.65807 * 11 10 9 36 36 H 1.09004 * 113.61669 * 254.61297 * 12 11 10 37 37 H 1.09001 * 113.61106 * 25.51189 * 12 11 10 38 38 H 1.09003 * 113.61982 * 220.02249 * 13 12 11 39 39 H 1.08999 * 113.61101 * 89.11691 * 13 12 11 40 40 H 1.09000 * 113.61345 * 270.87910 * 14 13 12 41 41 H 1.09001 * 113.61119 * 139.97831 * 14 13 12 42 42 H 1.07997 * 126.06846 * 179.73944 * 15 10 9 43 43 H 1.09002 * 109.46938 * 274.91746 * 18 17 16 44 44 H 1.08997 * 109.47171 * 34.91998 * 18 17 16 45 45 H 1.09006 * 109.46807 * 154.92130 * 18 17 16 46 46 H 1.09000 * 109.45521 * 181.37129 * 19 4 2 47 47 H 1.08994 * 109.46269 * 301.32846 * 19 4 2 48 48 H 1.08996 * 109.50251 * 178.71289 * 20 19 4 49 49 H 1.09003 * 109.49857 * 58.64013 * 20 19 4 50 50 H 1.08998 * 109.58444 * 294.83155 * 21 20 19 51 51 H 1.08996 * 109.58705 * 174.40137 * 21 20 19 52 52 H 0.96999 * 119.99979 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 1 1.6026 -1.7235 -1.2937 6 7 1.6706 0.0296 -2.4434 7 6 1.5486 -0.6002 -3.6286 8 8 1.6622 -1.8097 -3.6891 9 6 1.2778 0.1753 -4.8497 10 6 2.2130 0.7049 -5.7218 11 6 3.7135 0.6096 -5.6208 12 6 4.4100 0.3968 -6.9752 13 6 5.4910 1.3769 -6.4814 14 6 4.4149 1.9768 -5.5610 15 6 1.4704 1.3519 -6.7122 16 7 0.2022 1.1947 -6.4301 17 7 0.0532 0.5166 -5.3494 18 6 -1.2337 0.1638 -4.7447 19 6 3.5675 -0.8472 -1.1715 20 6 3.9570 -1.6657 0.0615 21 6 3.4651 -0.9485 1.3227 22 7 2.0225 -0.7010 1.1937 23 6 1.1537 -1.1153 2.1677 24 1 0.1509 -1.4172 1.9039 25 6 1.5619 -1.1474 3.4940 26 7 2.7018 -0.5909 3.8454 27 14 0.4935 -1.9801 4.7802 28 1 0.8734 -3.4116 4.8878 29 1 0.6910 -1.3156 6.0935 30 1 -0.9332 -1.8751 4.3819 31 1 -0.3633 -1.0278 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8925 34 1 1.5115 0.9846 -2.3831 35 1 4.0423 -0.0840 -4.8469 36 1 4.7749 -0.6196 -7.1236 37 1 3.8371 0.7701 -7.8241 38 1 5.8407 2.0652 -7.2508 39 1 6.3058 0.8930 -5.9428 40 1 3.8435 2.7813 -6.0240 41 1 4.7840 2.2353 -4.5685 42 1 1.8715 1.8851 -7.5614 43 1 -1.5757 0.9843 -4.1138 44 1 -1.9662 -0.0200 -5.5307 45 1 -1.1164 -0.7353 -4.1397 46 1 3.9373 -1.3432 -2.0688 47 1 4.0066 0.1479 -1.0997 48 1 5.0413 -1.7696 0.1017 49 1 3.4988 -2.6530 0.0024 50 1 3.9903 0.0004 1.4317 51 1 3.6518 -1.5743 2.1953 52 1 2.9873 -0.6137 4.7721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993335896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:48 Heat of formation + Delta-G solvation = 78.177872 kcal Electronic energy + Delta-G solvation = -31917.637080 eV Core-core repulsion = 27919.899009 eV Total energy + Delta-G solvation = -3997.738071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.66687 -39.63753 -38.71436 -37.63007 -34.40021 -33.47309 -32.66825 -31.85178 -31.11317 -29.20555 -27.61451 -26.33956 -25.71707 -25.43221 -25.06071 -23.37453 -21.57539 -21.46561 -20.76968 -20.01755 -19.35020 -19.19633 -17.90262 -16.66472 -16.27731 -15.94081 -15.74447 -15.66577 -14.99763 -14.96976 -14.49554 -14.27672 -13.82785 -13.67490 -13.62908 -13.31968 -13.22341 -13.00260 -12.80014 -12.67394 -12.60229 -12.57671 -12.35602 -11.79237 -11.60492 -11.19453 -11.04952 -10.94191 -10.84240 -10.72354 -10.63914 -10.61158 -10.44989 -10.37383 -10.24153 -10.09649 -10.06849 -9.73732 -9.46957 -9.26025 -8.80398 -8.74973 -8.51114 -6.68842 -5.83992 -3.33283 1.57786 2.05990 2.51633 2.72519 3.27369 3.33943 3.41362 3.41656 4.25336 4.42669 4.47646 4.57947 4.62737 4.67984 4.86496 4.88241 4.99481 5.15389 5.17450 5.24340 5.32453 5.34743 5.45145 5.46434 5.52860 5.59543 5.63078 5.72277 5.74106 5.79266 5.86035 5.90105 6.00302 6.13947 6.14333 6.24495 6.31507 6.35911 6.39127 6.45981 6.52982 6.60740 6.63391 6.70378 6.78756 6.91156 6.98977 7.36482 7.54954 7.65137 7.76335 7.93957 8.17720 8.41885 9.15839 9.76623 10.34113 11.24230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002960 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.604690 B = 9456.544452 C =10669.529529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.129 3.871 5 H 0.089 0.911 6 N -0.702 5.702 7 C 0.589 3.411 8 O -0.524 6.524 9 C -0.022 4.022 10 C -0.143 4.143 11 C -0.038 4.038 12 C -0.130 4.130 13 C -0.143 4.143 14 C -0.129 4.129 15 C 0.008 3.992 16 N -0.287 5.287 17 N -0.274 5.274 18 C 0.086 3.914 19 C -0.116 4.116 20 C -0.141 4.141 21 C 0.170 3.830 22 N -0.581 5.581 23 C -0.254 4.254 24 H 0.069 0.931 25 C 0.007 3.993 26 N -0.902 5.902 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.399 0.601 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.182 0.818 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.020 0.980 51 H 0.089 0.911 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 5.546 -19.385 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.023 3.977 5 H 0.107 0.893 6 N -0.352 5.352 7 C 0.370 3.630 8 O -0.399 6.399 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.057 4.057 12 C -0.167 4.167 13 C -0.180 4.180 14 C -0.167 4.167 15 C -0.170 4.170 16 N -0.117 5.117 17 N -0.062 5.062 18 C -0.054 4.054 19 C -0.155 4.155 20 C -0.180 4.180 21 C 0.045 3.955 22 N -0.304 5.304 23 C -0.384 4.384 24 H 0.087 0.913 25 C -0.192 4.192 26 N -0.546 5.546 27 Si 0.734 3.266 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.233 0.767 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.199 0.801 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.038 0.962 51 H 0.107 0.893 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.002 4.884 -19.503 20.130 hybrid contribution 0.181 -0.138 0.987 1.012 sum -0.821 4.746 -18.517 19.133 Atomic orbital electron populations 1.21817 0.95710 1.01683 1.00150 1.20553 0.93207 0.93601 0.86605 0.95410 1.21926 0.95430 0.96890 0.83418 0.89326 1.46175 1.68754 1.12483 1.07747 1.17008 0.77617 0.86526 0.81815 1.90854 1.50079 1.13232 1.85688 1.21534 0.86601 1.07066 0.99912 1.20464 0.95264 1.03442 0.96233 1.20860 0.87559 0.98437 0.98893 1.22996 0.97210 0.99935 0.96574 1.22870 0.96835 0.98859 0.99452 1.22962 0.97140 0.96228 1.00365 1.23285 0.88167 1.04168 1.01378 1.73128 1.21992 1.13791 1.02795 1.45521 1.06001 1.37609 1.17045 1.22203 0.81159 1.02686 0.99397 1.21764 0.95052 1.00260 0.98436 1.22199 0.99334 0.99677 0.96832 1.20855 0.83051 0.97238 0.94388 1.44006 1.03168 1.64916 1.18355 1.19141 0.96086 1.37505 0.85626 0.91336 1.25175 0.97562 0.99212 0.97229 1.69982 1.22170 1.45625 1.16855 0.86275 0.80084 0.79155 0.81131 1.21362 1.21699 1.20402 0.92620 0.91631 0.94573 0.76710 0.88739 0.91369 0.89888 0.91390 0.90121 0.89890 0.91243 0.80139 0.89406 0.88435 0.88702 0.93248 0.92556 0.92902 0.92518 0.96233 0.89262 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.86 37.16 0.29 -2.09 16 2 C 0.17 3.23 3.03 -67.60 -0.21 3.02 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.13 2.21 2.03 -67.81 -0.14 2.07 16 5 H 0.09 1.76 7.51 -51.93 -0.39 1.37 16 6 N -0.70 -9.95 4.57 -54.85 -0.25 -10.20 16 7 C 0.59 8.93 6.63 -12.64 -0.08 8.85 16 8 O -0.52 -9.92 16.74 5.25 0.09 -9.83 16 9 C -0.02 -0.30 6.71 -82.06 -0.55 -0.85 16 10 C -0.14 -1.74 5.49 -104.03 -0.57 -2.31 16 11 C -0.04 -0.41 4.11 -90.96 -0.37 -0.78 16 12 C -0.13 -1.15 7.60 -25.78 -0.20 -1.34 16 13 C -0.14 -1.12 8.09 -25.78 -0.21 -1.33 16 14 C -0.13 -1.15 7.62 -25.92 -0.20 -1.34 16 15 C 0.01 0.08 11.19 -17.43 -0.20 -0.11 16 16 N -0.29 -3.58 11.90 30.59 0.36 -3.22 16 17 N -0.27 -3.35 3.75 -63.88 -0.24 -3.59 16 18 C 0.09 0.77 11.22 59.85 0.67 1.44 16 19 C -0.12 -2.00 5.46 -26.69 -0.15 -2.15 16 20 C -0.14 -2.67 6.08 -26.61 -0.16 -2.84 16 21 C 0.17 3.90 5.25 -3.71 -0.02 3.88 16 22 N -0.58 -13.67 2.98 -164.77 -0.49 -14.16 16 23 C -0.25 -6.55 8.53 -15.06 -0.13 -6.68 16 24 H 0.07 1.73 6.28 -52.49 -0.33 1.40 16 25 C 0.01 0.19 5.05 -17.43 -0.09 0.11 16 26 N -0.90 -25.19 11.10 55.49 0.62 -24.58 16 27 Si 0.90 21.07 29.57 -169.99 -5.03 16.04 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 31 H 0.05 1.02 7.39 -51.92 -0.38 0.64 16 32 H 0.06 1.24 7.69 -51.93 -0.40 0.84 16 33 H 0.04 0.51 7.78 -51.93 -0.40 0.10 16 34 H 0.40 4.89 8.59 -40.82 -0.35 4.54 16 35 H 0.09 1.18 7.93 -51.93 -0.41 0.76 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.65 7.29 -51.93 -0.38 0.28 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.68 7.98 -51.93 -0.41 0.27 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.18 1.47 7.77 -52.49 -0.41 1.06 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.89 7.65 -51.93 -0.40 0.49 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 2.31 6.16 -51.93 -0.32 1.99 16 52 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 409.90 15.07 6.18 6.18 Total: -1.00 -30.96 409.90 -9.86 -40.81 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.80 Total: 5.00 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.30 Total: -2.46 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.00 Total: -55.75 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.96 -9.86 -40.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993335896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.993 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds