Wall clock time and date at job start Wed Apr 1 2020 04:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.58383 * 2 1 4 4 C 1.53192 * 109.58887 * 239.71218 * 2 1 3 5 5 H 1.08992 * 109.49805 * 305.56413 * 4 2 1 6 6 N 1.46497 * 109.49563 * 65.62822 * 4 2 1 7 7 C 1.34775 * 120.00178 * 204.93476 * 6 4 2 8 8 O 1.21630 * 119.99867 * 4.79200 * 7 6 4 9 9 C 1.47162 * 120.00453 * 184.78892 * 7 6 4 10 10 C 1.38407 * 126.88143 * 91.15935 * 9 7 6 11 11 C 1.50696 * 127.32231 * 359.97438 * 10 9 7 12 12 C 1.53776 * 113.61896 * 140.86082 * 11 10 9 13 13 C 1.54046 * 86.98841 * 140.01580 * 12 11 10 14 14 C 1.53779 * 87.07766 * 334.56850 * 13 12 11 15 15 C 1.39675 * 105.35818 * 180.24156 * 10 9 7 16 16 N 1.30869 * 107.85971 * 359.60674 * 15 10 9 17 17 N 1.28445 * 110.92730 * 0.41179 * 16 15 10 18 18 C 1.46497 * 125.18820 * 179.71324 * 17 16 15 19 19 C 1.53041 * 109.33654 * 185.59141 * 4 2 1 20 20 C 1.53035 * 109.54134 * 61.32288 * 19 4 2 21 21 C 1.53197 * 109.33632 * 298.67963 * 20 19 4 22 22 N 1.46929 * 108.77359 * 54.62059 * 21 20 19 23 23 C 1.36940 * 120.63119 * 126.41769 * 22 21 20 24 24 H 1.07996 * 119.99529 * 212.09517 * 23 22 21 25 25 C 1.38810 * 120.00137 * 32.09396 * 23 22 21 26 26 N 1.31624 * 119.99984 * 10.46810 * 25 23 22 27 27 Si 1.86799 * 120.00095 * 190.46322 * 25 23 22 28 28 H 1.48494 * 109.46885 * 90.00219 * 27 25 23 29 29 H 1.48498 * 109.47157 * 210.00220 * 27 25 23 30 30 H 1.48499 * 109.46881 * 330.00155 * 27 25 23 31 31 H 1.09008 * 109.46757 * 180.28486 * 1 2 3 32 32 H 1.09000 * 109.47540 * 300.28372 * 1 2 3 33 33 H 1.08993 * 109.46909 * 60.29066 * 1 2 3 34 34 H 0.97004 * 120.00407 * 24.93622 * 6 4 2 35 35 H 1.08997 * 112.84853 * 9.65807 * 11 10 9 36 36 H 1.09004 * 113.61669 * 254.61297 * 12 11 10 37 37 H 1.09001 * 113.61106 * 25.51189 * 12 11 10 38 38 H 1.09003 * 113.61982 * 220.02249 * 13 12 11 39 39 H 1.08999 * 113.61101 * 89.11691 * 13 12 11 40 40 H 1.09000 * 113.61345 * 270.87910 * 14 13 12 41 41 H 1.09001 * 113.61119 * 139.97831 * 14 13 12 42 42 H 1.07997 * 126.06846 * 179.73944 * 15 10 9 43 43 H 1.09002 * 109.46938 * 274.91746 * 18 17 16 44 44 H 1.08997 * 109.47171 * 34.91998 * 18 17 16 45 45 H 1.09006 * 109.46807 * 154.92130 * 18 17 16 46 46 H 1.09000 * 109.45521 * 181.37129 * 19 4 2 47 47 H 1.08994 * 109.46269 * 301.32846 * 19 4 2 48 48 H 1.08996 * 109.50251 * 178.71289 * 20 19 4 49 49 H 1.09003 * 109.49857 * 58.64013 * 20 19 4 50 50 H 1.08998 * 109.58444 * 294.83155 * 21 20 19 51 51 H 1.08996 * 109.58705 * 174.40137 * 21 20 19 52 52 H 0.96999 * 119.99979 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 1 1.6026 -1.7235 -1.2937 6 7 1.6706 0.0296 -2.4434 7 6 1.5486 -0.6002 -3.6286 8 8 1.6622 -1.8097 -3.6891 9 6 1.2778 0.1753 -4.8497 10 6 2.2130 0.7049 -5.7218 11 6 3.7135 0.6096 -5.6208 12 6 4.4100 0.3968 -6.9752 13 6 5.4910 1.3769 -6.4814 14 6 4.4149 1.9768 -5.5610 15 6 1.4704 1.3519 -6.7122 16 7 0.2022 1.1947 -6.4301 17 7 0.0532 0.5166 -5.3494 18 6 -1.2337 0.1638 -4.7447 19 6 3.5675 -0.8472 -1.1715 20 6 3.9570 -1.6657 0.0615 21 6 3.4651 -0.9485 1.3227 22 7 2.0225 -0.7010 1.1937 23 6 1.1537 -1.1153 2.1677 24 1 0.1509 -1.4172 1.9039 25 6 1.5619 -1.1474 3.4940 26 7 2.7018 -0.5909 3.8454 27 14 0.4935 -1.9801 4.7802 28 1 0.8734 -3.4116 4.8878 29 1 0.6910 -1.3156 6.0935 30 1 -0.9332 -1.8751 4.3819 31 1 -0.3633 -1.0278 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8925 34 1 1.5115 0.9846 -2.3831 35 1 4.0423 -0.0840 -4.8469 36 1 4.7749 -0.6196 -7.1236 37 1 3.8371 0.7701 -7.8241 38 1 5.8407 2.0652 -7.2508 39 1 6.3058 0.8930 -5.9428 40 1 3.8435 2.7813 -6.0240 41 1 4.7840 2.2353 -4.5685 42 1 1.8715 1.8851 -7.5614 43 1 -1.5757 0.9843 -4.1138 44 1 -1.9662 -0.0200 -5.5307 45 1 -1.1164 -0.7353 -4.1397 46 1 3.9373 -1.3432 -2.0688 47 1 4.0066 0.1479 -1.0997 48 1 5.0413 -1.7696 0.1017 49 1 3.4988 -2.6530 0.0024 50 1 3.9903 0.0004 1.4317 51 1 3.6518 -1.5743 2.1953 52 1 2.9873 -0.6137 4.7721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993335896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:47 Heat of formation + Delta-G solvation = 60.519850 kcal Electronic energy + Delta-G solvation = -31918.402789 eV Core-core repulsion = 27919.899009 eV Total energy + Delta-G solvation = -3998.503780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.57494 -40.99050 -39.43660 -39.18824 -35.97311 -34.36087 -34.23593 -33.47085 -32.28213 -30.77786 -28.45777 -27.87079 -26.89914 -26.39692 -26.22364 -24.70902 -23.00438 -22.38375 -22.27816 -21.34196 -20.74096 -19.93210 -19.04103 -18.26954 -17.62900 -17.07911 -16.91624 -16.62896 -16.49869 -15.96206 -15.73061 -15.59525 -15.34658 -15.20055 -14.96486 -14.65571 -14.29989 -14.26903 -13.94771 -13.73513 -13.44398 -13.35909 -13.27651 -13.23582 -13.05777 -12.83809 -12.71442 -12.54857 -12.41385 -12.00878 -11.90512 -11.84499 -11.78996 -11.68350 -11.50514 -11.32489 -11.28654 -11.18691 -11.09726 -10.52618 -10.17688 -10.16402 -9.63284 -8.61812 -7.85159 -5.35957 0.61497 1.02584 1.47083 1.49033 1.56335 1.63733 1.67810 2.12557 2.52781 3.31312 3.44148 3.48613 3.66237 3.75673 3.87224 3.92024 3.96316 4.00341 4.14346 4.19054 4.23911 4.25305 4.31633 4.35127 4.48330 4.51789 4.54337 4.60318 4.70786 4.74685 4.87185 4.89255 4.90991 4.95502 5.00771 5.04441 5.12395 5.15455 5.16958 5.17850 5.24121 5.40807 5.42205 5.45232 5.51875 5.57913 5.66322 5.70727 5.75669 5.77602 6.34362 6.43729 6.97938 7.04678 7.17506 7.85594 8.38229 9.21300 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002960 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.604690 B = 9456.544452 C =10669.529529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.166 3.834 3 H 0.033 0.967 4 C 0.146 3.854 5 H 0.064 0.936 6 N -0.688 5.688 7 C 0.600 3.400 8 O -0.565 6.565 9 C -0.048 4.048 10 C -0.141 4.141 11 C -0.049 4.049 12 C -0.126 4.126 13 C -0.135 4.135 14 C -0.123 4.123 15 C 0.009 3.991 16 N -0.296 5.296 17 N -0.275 5.275 18 C 0.078 3.922 19 C -0.109 4.109 20 C -0.130 4.130 21 C 0.177 3.823 22 N -0.599 5.599 23 C -0.254 4.254 24 H 0.072 0.928 25 C -0.045 4.045 26 N -0.933 5.933 27 Si 0.961 3.039 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.268 1.268 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.211 0.789 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.045 0.955 50 H 0.004 0.996 51 H 0.055 0.945 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 6.868 -21.756 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.059 3.941 3 H 0.050 0.950 4 C 0.040 3.960 5 H 0.082 0.918 6 N -0.338 5.338 7 C 0.384 3.616 8 O -0.442 6.442 9 C -0.176 4.176 10 C -0.152 4.152 11 C -0.069 4.069 12 C -0.164 4.164 13 C -0.173 4.173 14 C -0.161 4.161 15 C -0.168 4.168 16 N -0.127 5.127 17 N -0.064 5.064 18 C -0.062 4.062 19 C -0.148 4.148 20 C -0.169 4.169 21 C 0.051 3.949 22 N -0.323 5.323 23 C -0.384 4.384 24 H 0.089 0.911 25 C -0.241 4.241 26 N -0.579 5.579 27 Si 0.790 3.210 28 H -0.216 1.216 29 H -0.222 1.222 30 H -0.192 1.192 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.228 0.772 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.022 0.978 51 H 0.073 0.927 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.563 6.234 -21.902 22.826 hybrid contribution 0.338 -0.534 1.646 1.763 sum -1.226 5.700 -20.256 21.079 Atomic orbital electron populations 1.21732 0.94322 1.01215 1.01251 1.20693 0.94397 0.93395 0.85611 0.94976 1.21447 0.95221 0.95645 0.83681 0.91785 1.45911 1.68324 1.12849 1.06710 1.17135 0.76319 0.85935 0.82253 1.90834 1.51900 1.15181 1.86298 1.21329 0.87904 1.08533 0.99849 1.20740 0.95780 1.02740 0.95931 1.20929 0.87053 0.99365 0.99538 1.23025 0.97376 1.00058 0.95926 1.22838 0.96309 0.98626 0.99480 1.22956 0.97201 0.95400 1.00530 1.23757 0.87529 1.03738 1.01741 1.73130 1.22733 1.14006 1.02827 1.45775 1.06339 1.37336 1.16916 1.22451 0.80431 1.03113 1.00186 1.21684 0.95007 1.00522 0.97542 1.22030 1.00414 0.98734 0.95748 1.20636 0.83186 0.96118 0.94932 1.44236 1.03134 1.65707 1.19250 1.19421 0.96359 1.36412 0.86212 0.91074 1.25843 0.98785 1.00420 0.99056 1.70130 1.23723 1.47398 1.16665 0.85355 0.79182 0.77796 0.78645 1.21608 1.22241 1.19239 0.93797 0.93163 0.90822 0.75160 0.91068 0.91994 0.88442 0.89633 0.90378 0.88705 0.91764 0.77205 0.87473 0.86778 0.89494 0.92639 0.91426 0.90865 0.93661 0.97781 0.92658 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 7.86 71.98 0.57 -3.78 16 2 C 0.17 6.28 3.03 44.97 0.14 6.42 16 3 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.15 4.95 2.03 45.07 0.09 5.04 16 5 H 0.06 2.55 7.51 -2.39 -0.02 2.53 16 6 N -0.69 -18.65 4.57 -445.70 -2.04 -20.69 16 7 C 0.60 17.77 6.63 86.59 0.57 18.34 16 8 O -0.56 -21.43 16.74 -4.13 -0.07 -21.50 16 9 C -0.05 -1.22 6.71 40.79 0.27 -0.94 16 10 C -0.14 -3.15 5.49 -19.48 -0.11 -3.26 16 11 C -0.05 -0.98 4.11 -11.02 -0.05 -1.02 16 12 C -0.13 -1.96 7.60 31.21 0.24 -1.72 16 13 C -0.14 -1.79 8.09 31.21 0.25 -1.54 16 14 C -0.12 -1.90 7.62 31.12 0.24 -1.66 16 15 C 0.01 0.18 11.19 85.18 0.95 1.13 16 16 N -0.30 -6.68 11.90 -57.14 -0.68 -7.36 16 17 N -0.28 -6.22 3.75 -356.02 -1.33 -7.56 16 18 C 0.08 1.24 11.22 127.77 1.43 2.68 16 19 C -0.11 -3.66 5.46 30.62 0.17 -3.50 16 20 C -0.13 -4.94 6.08 30.67 0.19 -4.75 16 21 C 0.18 8.30 5.25 86.36 0.45 8.76 16 22 N -0.60 -28.57 2.98 -675.21 -2.01 -30.59 16 23 C -0.25 -13.27 8.53 84.03 0.72 -12.55 16 24 H 0.07 3.62 6.28 -2.91 -0.02 3.60 16 25 C -0.05 -2.46 5.05 84.86 0.43 -2.03 16 26 N -0.93 -53.61 11.10 21.65 0.24 -53.37 16 27 Si 0.96 43.97 29.57 68.60 2.03 46.00 16 28 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 30 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 31 H 0.04 1.58 7.39 -2.38 -0.02 1.57 16 32 H 0.05 1.86 7.69 -2.39 -0.02 1.84 16 33 H 0.07 1.91 7.78 -2.39 -0.02 1.89 16 34 H 0.41 9.26 8.59 -92.71 -0.80 8.47 16 35 H 0.07 1.74 7.93 -2.39 -0.02 1.73 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.23 7.29 -2.39 -0.02 1.21 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.25 7.98 -2.39 -0.02 1.23 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.21 2.60 7.77 -2.91 -0.02 2.58 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.53 7.65 -2.38 -0.02 1.51 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 51 H 0.05 2.97 6.16 -2.39 -0.01 2.95 16 52 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -68.18 409.90 2.81 -65.37 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.12 Total: 24.08 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.55 Total: 5.61 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.82 Total: -119.56 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.18 2.81 -65.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993335896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.889 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds