Wall clock time and date at job start Wed Apr 1 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.70366 * 2 1 4 4 C 1.53194 * 109.58617 * 120.36079 * 2 1 3 5 5 H 1.08998 * 109.49829 * 294.36806 * 4 2 1 6 6 N 1.46494 * 109.49954 * 54.43671 * 4 2 1 7 7 C 1.34772 * 120.00074 * 204.99758 * 6 4 2 8 8 O 1.21632 * 119.99945 * 355.13924 * 7 6 4 9 9 C 1.47168 * 120.00461 * 175.13675 * 7 6 4 10 10 C 1.38400 * 126.88123 * 91.51365 * 9 7 6 11 11 C 1.50703 * 127.32288 * 0.03014 * 10 9 7 12 12 C 1.53777 * 113.61233 * 217.49160 * 11 10 9 13 13 C 1.53783 * 87.07936 * 220.01741 * 12 11 10 14 14 C 1.53778 * 113.61289 * 119.99332 * 11 10 9 15 15 C 1.39675 * 105.36047 * 180.02562 * 10 9 7 16 16 N 1.30868 * 107.85890 * 0.02562 * 15 10 9 17 17 N 1.28450 * 110.92651 * 359.71263 * 16 15 10 18 18 C 1.46497 * 125.19067 * 180.27732 * 17 16 15 19 19 C 1.53039 * 109.30933 * 174.41913 * 4 2 1 20 20 C 1.53037 * 109.53893 * 298.63354 * 19 4 2 21 21 C 1.53188 * 109.31358 * 61.36587 * 20 19 4 22 22 N 1.46925 * 109.57978 * 239.64679 * 2 1 3 23 23 C 1.36940 * 120.63697 * 6.58396 * 22 2 1 24 24 H 1.08002 * 119.99334 * 326.11868 * 23 22 2 25 25 C 1.38806 * 120.00340 * 146.11504 * 23 22 2 26 26 N 1.31625 * 120.00012 * 344.72700 * 25 23 22 27 27 Si 1.86789 * 120.00142 * 164.71905 * 25 23 22 28 28 H 1.48505 * 109.47303 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47355 * 120.00248 * 27 25 23 30 30 H 1.48503 * 109.47423 * 240.00287 * 27 25 23 31 31 H 1.09011 * 109.46498 * 299.64069 * 1 2 3 32 32 H 1.08995 * 109.47286 * 59.63984 * 1 2 3 33 33 H 1.08999 * 109.47205 * 179.64293 * 1 2 3 34 34 H 0.96997 * 120.00193 * 24.99691 * 6 4 2 35 35 H 1.08992 * 112.85118 * 348.80270 * 11 10 9 36 36 H 1.08999 * 113.61833 * 334.56719 * 12 11 10 37 37 H 1.08999 * 113.61177 * 105.47207 * 12 11 10 38 38 H 1.08997 * 113.61865 * 270.88462 * 13 12 11 39 39 H 1.09002 * 113.68952 * 139.99632 * 13 12 11 40 40 H 1.09003 * 113.62164 * 254.53112 * 14 11 10 41 41 H 1.09002 * 113.61839 * 25.35017 * 14 11 10 42 42 H 1.07995 * 126.07541 * 180.02562 * 15 10 9 43 43 H 1.09000 * 109.47347 * 272.15213 * 18 17 16 44 44 H 1.09001 * 109.47264 * 32.15001 * 18 17 16 45 45 H 1.08999 * 109.47149 * 152.15081 * 18 17 16 46 46 H 1.09006 * 109.46374 * 58.65482 * 19 4 2 47 47 H 1.09002 * 109.46290 * 178.62308 * 19 4 2 48 48 H 1.09010 * 109.49621 * 181.31650 * 20 19 4 49 49 H 1.08997 * 109.49935 * 301.37905 * 20 19 4 50 50 H 1.09003 * 109.58726 * 65.15055 * 21 20 19 51 51 H 1.08997 * 109.59007 * 185.43143 * 21 20 19 52 52 H 0.96995 * 120.00167 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.7661 -0.1670 2.1368 6 7 1.4508 -2.0677 1.3074 7 6 1.3279 -2.6960 2.4934 8 8 1.7884 -2.1911 3.4996 9 6 0.6365 -3.9928 2.5711 10 6 1.2107 -5.2478 2.4666 11 6 2.6667 -5.5714 2.2512 12 6 2.8992 -6.7807 1.3302 13 6 4.0323 -7.1908 2.2855 14 6 3.2843 -6.4125 3.3808 15 6 0.1538 -6.1507 2.6032 16 7 -0.9447 -5.4600 2.7729 17 7 -0.6997 -4.1991 2.7652 18 6 -1.7011 -3.1434 2.9348 19 6 3.5675 -0.8481 1.1700 20 6 3.9568 -1.6658 -0.0637 21 6 3.4649 -0.9470 -1.3238 22 7 2.0224 -0.6995 -1.1945 23 6 1.1535 -1.1134 -2.1687 24 1 0.1603 -1.4430 -1.9016 25 6 1.5491 -1.1092 -3.4991 26 7 2.6223 -0.4404 -3.8645 27 14 0.5588 -2.0530 -4.7710 28 1 -0.5934 -2.7159 -4.1090 29 1 0.0602 -1.1132 -5.8071 30 1 1.4219 -3.0798 -5.4082 31 1 -0.3633 0.5083 0.8933 32 1 -0.3633 0.5194 -0.8867 33 1 -0.3633 -1.0276 -0.0064 34 1 1.1468 -2.5017 0.4949 35 1 3.2596 -4.6968 1.9840 36 1 2.0663 -7.4835 1.3135 37 1 3.2457 -6.5096 0.3329 38 1 4.9994 -6.7597 2.0266 39 1 4.0830 -8.2640 2.4696 40 1 3.9416 -5.8443 4.0390 41 1 2.5564 -7.0136 3.9258 42 1 0.2296 -7.2276 2.5740 43 1 -2.1254 -2.8857 1.9644 44 1 -2.4931 -3.4965 3.5953 45 1 -1.2301 -2.2625 3.3709 46 1 4.0062 0.1472 1.0992 47 1 3.9379 -1.3452 2.0666 48 1 5.0412 -1.7697 -0.1039 49 1 3.4987 -2.6531 -0.0052 50 1 3.9902 0.0020 -1.4318 51 1 3.6540 -1.5706 -2.1976 52 1 2.8986 -0.4371 -4.7943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993335906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:02 Heat of formation + Delta-G solvation = 78.367581 kcal Electronic energy + Delta-G solvation = -32848.741362 eV Core-core repulsion = 28851.011517 eV Total energy + Delta-G solvation = -3997.729845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.50393 -39.64112 -38.58186 -37.57058 -34.00634 -33.32951 -32.54670 -31.85349 -30.95715 -29.38469 -27.48303 -26.37447 -25.56893 -25.30780 -25.05781 -23.24236 -21.75095 -21.37014 -20.83810 -19.80693 -19.05392 -18.83383 -17.92068 -16.57247 -16.18517 -15.77274 -15.64565 -15.38724 -14.94379 -14.84620 -14.45977 -14.32455 -13.95630 -13.60777 -13.41036 -13.13431 -13.04926 -12.98333 -12.82382 -12.65090 -12.51657 -12.42305 -12.21254 -11.94001 -11.35993 -11.30148 -11.05943 -10.90661 -10.78689 -10.72486 -10.59842 -10.56498 -10.45888 -10.30265 -10.18490 -10.08376 -9.88738 -9.75596 -9.36230 -9.09847 -8.68040 -8.58432 -8.54800 -6.68649 -5.88562 -3.38022 1.74539 2.20586 2.67896 2.90313 3.29438 3.38695 3.39091 3.49796 4.39048 4.39370 4.62878 4.73484 4.79497 4.85432 5.00224 5.02180 5.13642 5.21657 5.26268 5.27392 5.33206 5.47299 5.51181 5.52005 5.62905 5.65496 5.73580 5.77680 5.86685 5.88916 5.93115 6.02939 6.03187 6.13911 6.21692 6.29164 6.31397 6.44841 6.50965 6.55170 6.57443 6.60872 6.70289 6.76788 6.85773 6.87955 6.98153 7.28623 7.55459 7.72332 7.81501 8.09592 8.36187 8.38485 9.11336 9.73001 10.32855 11.19230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004116 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.165618 B = 6800.852041 C = 7039.581926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.133 3.867 5 H 0.076 0.924 6 N -0.684 5.684 7 C 0.586 3.414 8 O -0.537 6.537 9 C -0.019 4.019 10 C -0.144 4.144 11 C -0.036 4.036 12 C -0.130 4.130 13 C -0.142 4.142 14 C -0.128 4.128 15 C 0.008 3.992 16 N -0.288 5.288 17 N -0.273 5.273 18 C 0.087 3.913 19 C -0.121 4.121 20 C -0.140 4.140 21 C 0.175 3.825 22 N -0.584 5.584 23 C -0.260 4.260 24 H 0.066 0.934 25 C 0.013 3.987 26 N -0.895 5.895 27 Si 0.897 3.103 28 H -0.277 1.277 29 H -0.290 1.290 30 H -0.289 1.289 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.412 0.588 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.181 0.819 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.020 0.980 51 H 0.077 0.923 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -8.185 12.257 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.059 0.941 4 C 0.027 3.973 5 H 0.094 0.906 6 N -0.334 5.334 7 C 0.368 3.632 8 O -0.413 6.413 9 C -0.148 4.148 10 C -0.154 4.154 11 C -0.056 4.056 12 C -0.167 4.167 13 C -0.180 4.180 14 C -0.166 4.166 15 C -0.170 4.170 16 N -0.119 5.119 17 N -0.061 5.061 18 C -0.053 4.053 19 C -0.160 4.160 20 C -0.179 4.179 21 C 0.049 3.951 22 N -0.307 5.307 23 C -0.390 4.390 24 H 0.084 0.916 25 C -0.187 4.187 26 N -0.537 5.537 27 Si 0.726 3.274 28 H -0.202 1.202 29 H -0.217 1.217 30 H -0.215 1.215 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.249 0.751 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.198 0.802 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.038 0.962 51 H 0.096 0.904 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.922 -7.727 12.959 15.368 hybrid contribution 0.233 -0.503 -1.320 1.432 sum -2.689 -8.230 11.639 14.506 Atomic orbital electron populations 1.21774 0.95699 1.01260 1.00498 1.20735 0.93318 0.93969 0.86767 0.94056 1.21667 0.93293 0.82317 1.00034 0.90557 1.46054 1.60416 1.18336 1.08641 1.17036 0.79787 0.82170 0.84246 1.90806 1.49159 1.65595 1.35729 1.21479 0.85436 0.96121 1.11781 1.20457 0.96510 0.90047 1.08405 1.20837 0.89645 0.97709 0.97398 1.22955 0.98552 0.97039 0.98187 1.22822 0.98051 1.00073 0.97041 1.22942 0.99246 0.98186 0.96233 1.23262 0.87801 0.99968 1.05977 1.73111 1.27582 0.89896 1.21264 1.45451 1.05234 1.04845 1.50573 1.22167 0.91005 0.87828 1.04300 1.21768 0.95178 1.00636 0.98393 1.22138 0.99041 0.99557 0.97209 1.20710 0.83416 0.96980 0.93982 1.44098 1.02981 1.64808 1.18859 1.19061 0.97097 1.37371 0.85450 0.91637 1.25182 0.97836 0.98376 0.97287 1.70031 1.26203 1.41139 1.16355 0.86335 0.79669 0.79570 0.81802 1.20236 1.21685 1.21513 0.94280 0.91586 0.93039 0.75086 0.88741 0.89898 0.91079 0.90179 0.91499 0.91526 0.90038 0.80220 0.89430 0.88512 0.88928 0.91745 0.92893 0.93341 0.92788 0.96197 0.90449 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 7.76 37.16 0.29 -1.99 16 2 C 0.16 2.97 3.20 -67.60 -0.22 2.76 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.23 2.29 -67.81 -0.16 2.07 16 5 H 0.08 1.26 7.65 -51.93 -0.40 0.87 16 6 N -0.68 -11.07 3.46 -54.85 -0.19 -11.26 16 7 C 0.59 9.63 6.68 -12.64 -0.08 9.54 16 8 O -0.54 -10.22 16.82 5.25 0.09 -10.13 16 9 C -0.02 -0.30 6.71 -82.06 -0.55 -0.85 16 10 C -0.14 -2.03 5.49 -104.02 -0.57 -2.60 16 11 C -0.04 -0.46 4.12 -90.96 -0.37 -0.84 16 12 C -0.13 -1.40 7.58 -25.92 -0.20 -1.60 16 13 C -0.14 -1.36 8.08 -25.92 -0.21 -1.57 16 14 C -0.13 -1.39 7.62 -25.92 -0.20 -1.58 16 15 C 0.01 0.10 11.24 -17.43 -0.20 -0.10 16 16 N -0.29 -4.13 11.90 30.59 0.36 -3.77 16 17 N -0.27 -3.83 3.75 -63.88 -0.24 -4.07 16 18 C 0.09 0.91 11.18 59.85 0.67 1.58 16 19 C -0.12 -2.04 5.58 -26.69 -0.15 -2.19 16 20 C -0.14 -2.53 5.93 -26.61 -0.16 -2.69 16 21 C 0.17 3.82 5.26 -3.71 -0.02 3.80 16 22 N -0.58 -12.86 2.62 -164.77 -0.43 -13.29 16 23 C -0.26 -6.35 8.44 -15.06 -0.13 -6.47 16 24 H 0.07 1.57 6.37 -52.49 -0.33 1.24 16 25 C 0.01 0.35 4.92 -17.43 -0.09 0.26 16 26 N -0.89 -24.51 11.54 55.49 0.64 -23.87 16 27 Si 0.90 20.56 29.58 -169.99 -5.03 15.53 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16 33 H 0.05 0.86 6.35 -51.93 -0.33 0.53 16 34 H 0.41 7.11 7.76 -40.82 -0.32 6.79 16 35 H 0.09 1.35 7.94 -51.93 -0.41 0.94 16 36 H 0.08 0.81 7.19 -51.93 -0.37 0.44 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 42 H 0.18 1.81 7.68 -52.49 -0.40 1.40 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.94 7.73 -51.93 -0.40 0.54 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 49 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.08 1.92 6.47 -51.93 -0.34 1.58 16 52 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -29.39 407.48 -9.71 -39.10 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.72 Total: 8.08 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.33 Total: -2.46 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.14 Total: -56.26 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.39 -9.71 -39.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993335906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.464 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds