Wall clock time and date at job start Wed Apr 1 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.70366 * 2 1 4 4 C 1.53194 * 109.58617 * 120.36079 * 2 1 3 5 5 H 1.08998 * 109.49829 * 294.36806 * 4 2 1 6 6 N 1.46494 * 109.49954 * 54.43671 * 4 2 1 7 7 C 1.34772 * 120.00074 * 204.99758 * 6 4 2 8 8 O 1.21632 * 119.99945 * 355.13924 * 7 6 4 9 9 C 1.47168 * 120.00461 * 175.13675 * 7 6 4 10 10 C 1.38400 * 126.88123 * 91.51365 * 9 7 6 11 11 C 1.50703 * 127.32288 * 0.03014 * 10 9 7 12 12 C 1.53777 * 113.61233 * 217.49160 * 11 10 9 13 13 C 1.53783 * 87.07936 * 220.01741 * 12 11 10 14 14 C 1.53778 * 113.61289 * 119.99332 * 11 10 9 15 15 C 1.39675 * 105.36047 * 180.02562 * 10 9 7 16 16 N 1.30868 * 107.85890 * 0.02562 * 15 10 9 17 17 N 1.28450 * 110.92651 * 359.71263 * 16 15 10 18 18 C 1.46497 * 125.19067 * 180.27732 * 17 16 15 19 19 C 1.53039 * 109.30933 * 174.41913 * 4 2 1 20 20 C 1.53037 * 109.53893 * 298.63354 * 19 4 2 21 21 C 1.53188 * 109.31358 * 61.36587 * 20 19 4 22 22 N 1.46925 * 109.57978 * 239.64679 * 2 1 3 23 23 C 1.36940 * 120.63697 * 6.58396 * 22 2 1 24 24 H 1.08002 * 119.99334 * 326.11868 * 23 22 2 25 25 C 1.38806 * 120.00340 * 146.11504 * 23 22 2 26 26 N 1.31625 * 120.00012 * 344.72700 * 25 23 22 27 27 Si 1.86789 * 120.00142 * 164.71905 * 25 23 22 28 28 H 1.48505 * 109.47303 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47355 * 120.00248 * 27 25 23 30 30 H 1.48503 * 109.47423 * 240.00287 * 27 25 23 31 31 H 1.09011 * 109.46498 * 299.64069 * 1 2 3 32 32 H 1.08995 * 109.47286 * 59.63984 * 1 2 3 33 33 H 1.08999 * 109.47205 * 179.64293 * 1 2 3 34 34 H 0.96997 * 120.00193 * 24.99691 * 6 4 2 35 35 H 1.08992 * 112.85118 * 348.80270 * 11 10 9 36 36 H 1.08999 * 113.61833 * 334.56719 * 12 11 10 37 37 H 1.08999 * 113.61177 * 105.47207 * 12 11 10 38 38 H 1.08997 * 113.61865 * 270.88462 * 13 12 11 39 39 H 1.09002 * 113.68952 * 139.99632 * 13 12 11 40 40 H 1.09003 * 113.62164 * 254.53112 * 14 11 10 41 41 H 1.09002 * 113.61839 * 25.35017 * 14 11 10 42 42 H 1.07995 * 126.07541 * 180.02562 * 15 10 9 43 43 H 1.09000 * 109.47347 * 272.15213 * 18 17 16 44 44 H 1.09001 * 109.47264 * 32.15001 * 18 17 16 45 45 H 1.08999 * 109.47149 * 152.15081 * 18 17 16 46 46 H 1.09006 * 109.46374 * 58.65482 * 19 4 2 47 47 H 1.09002 * 109.46290 * 178.62308 * 19 4 2 48 48 H 1.09010 * 109.49621 * 181.31650 * 20 19 4 49 49 H 1.08997 * 109.49935 * 301.37905 * 20 19 4 50 50 H 1.09003 * 109.58726 * 65.15055 * 21 20 19 51 51 H 1.08997 * 109.59007 * 185.43143 * 21 20 19 52 52 H 0.96995 * 120.00167 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.7661 -0.1670 2.1368 6 7 1.4508 -2.0677 1.3074 7 6 1.3279 -2.6960 2.4934 8 8 1.7884 -2.1911 3.4996 9 6 0.6365 -3.9928 2.5711 10 6 1.2107 -5.2478 2.4666 11 6 2.6667 -5.5714 2.2512 12 6 2.8992 -6.7807 1.3302 13 6 4.0323 -7.1908 2.2855 14 6 3.2843 -6.4125 3.3808 15 6 0.1538 -6.1507 2.6032 16 7 -0.9447 -5.4600 2.7729 17 7 -0.6997 -4.1991 2.7652 18 6 -1.7011 -3.1434 2.9348 19 6 3.5675 -0.8481 1.1700 20 6 3.9568 -1.6658 -0.0637 21 6 3.4649 -0.9470 -1.3238 22 7 2.0224 -0.6995 -1.1945 23 6 1.1535 -1.1134 -2.1687 24 1 0.1603 -1.4430 -1.9016 25 6 1.5491 -1.1092 -3.4991 26 7 2.6223 -0.4404 -3.8645 27 14 0.5588 -2.0530 -4.7710 28 1 -0.5934 -2.7159 -4.1090 29 1 0.0602 -1.1132 -5.8071 30 1 1.4219 -3.0798 -5.4082 31 1 -0.3633 0.5083 0.8933 32 1 -0.3633 0.5194 -0.8867 33 1 -0.3633 -1.0276 -0.0064 34 1 1.1468 -2.5017 0.4949 35 1 3.2596 -4.6968 1.9840 36 1 2.0663 -7.4835 1.3135 37 1 3.2457 -6.5096 0.3329 38 1 4.9994 -6.7597 2.0266 39 1 4.0830 -8.2640 2.4696 40 1 3.9416 -5.8443 4.0390 41 1 2.5564 -7.0136 3.9258 42 1 0.2296 -7.2276 2.5740 43 1 -2.1254 -2.8857 1.9644 44 1 -2.4931 -3.4965 3.5953 45 1 -1.2301 -2.2625 3.3709 46 1 4.0062 0.1472 1.0992 47 1 3.9379 -1.3452 2.0666 48 1 5.0412 -1.7697 -0.1039 49 1 3.4987 -2.6531 -0.0052 50 1 3.9902 0.0020 -1.4318 51 1 3.6540 -1.5706 -2.1976 52 1 2.8986 -0.4371 -4.7943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993335906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:01 Heat of formation + Delta-G solvation = 63.189408 kcal Electronic energy + Delta-G solvation = -32849.399537 eV Core-core repulsion = 28851.011517 eV Total energy + Delta-G solvation = -3998.388020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.54662 -41.04599 -39.45877 -39.08931 -35.63942 -34.29099 -34.08486 -33.43825 -32.23789 -30.92571 -28.43138 -27.87884 -26.84148 -26.41418 -26.23904 -24.58216 -23.31580 -22.38078 -22.30236 -21.04555 -20.35649 -19.93981 -19.07975 -18.29910 -17.40604 -17.01490 -16.83387 -16.60312 -16.43195 -16.06055 -15.75976 -15.62733 -15.36625 -15.06471 -14.82182 -14.62423 -14.28818 -14.17670 -13.94029 -13.73949 -13.58664 -13.43003 -13.25046 -13.06837 -12.96227 -12.91612 -12.75068 -12.47653 -12.36124 -12.21919 -11.94761 -11.85078 -11.67918 -11.52946 -11.42526 -11.32036 -11.22711 -11.14937 -11.01766 -10.52197 -10.14928 -10.05758 -9.61429 -8.55898 -7.83505 -5.33696 0.64684 1.07501 1.45441 1.50126 1.56962 1.66503 1.75654 2.26159 2.51653 3.33459 3.47257 3.58371 3.59288 3.75689 3.90607 3.96095 3.99856 4.05032 4.13505 4.18279 4.24071 4.25794 4.33306 4.38337 4.50835 4.54992 4.56473 4.65902 4.70810 4.74242 4.89759 4.93182 4.94018 4.97626 5.01791 5.02154 5.11434 5.14549 5.17528 5.20888 5.34149 5.41649 5.44504 5.51081 5.53942 5.54941 5.64828 5.74344 5.76457 5.78353 6.44877 6.46496 7.03500 7.06021 7.19780 7.87829 8.43529 9.22735 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004116 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.165618 B = 6800.852041 C = 7039.581926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.036 0.964 4 C 0.142 3.858 5 H 0.087 0.913 6 N -0.678 5.678 7 C 0.598 3.402 8 O -0.564 6.564 9 C -0.047 4.047 10 C -0.146 4.146 11 C -0.048 4.048 12 C -0.126 4.126 13 C -0.132 4.132 14 C -0.124 4.124 15 C 0.007 3.993 16 N -0.299 5.299 17 N -0.275 5.275 18 C 0.079 3.921 19 C -0.116 4.116 20 C -0.125 4.125 21 C 0.183 3.817 22 N -0.594 5.594 23 C -0.247 4.247 24 H 0.073 0.927 25 C -0.040 4.040 26 N -0.931 5.931 27 Si 0.952 3.048 28 H -0.265 1.265 29 H -0.298 1.298 30 H -0.296 1.296 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.408 0.592 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.210 0.790 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.050 0.950 50 H -0.002 1.002 51 H 0.044 0.956 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -9.780 13.770 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.053 0.947 4 C 0.036 3.964 5 H 0.105 0.895 6 N -0.328 5.328 7 C 0.381 3.619 8 O -0.442 6.442 9 C -0.176 4.176 10 C -0.157 4.157 11 C -0.068 4.068 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.162 4.162 15 C -0.170 4.170 16 N -0.129 5.129 17 N -0.063 5.063 18 C -0.060 4.060 19 C -0.154 4.154 20 C -0.164 4.164 21 C 0.058 3.942 22 N -0.318 5.318 23 C -0.377 4.377 24 H 0.091 0.909 25 C -0.236 4.236 26 N -0.576 5.576 27 Si 0.781 3.219 28 H -0.190 1.190 29 H -0.225 1.225 30 H -0.223 1.223 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.226 0.774 43 H 0.116 0.884 44 H 0.135 0.865 45 H 0.111 0.889 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.016 0.984 51 H 0.063 0.937 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.018 -9.323 14.498 17.700 hybrid contribution 0.551 0.024 -1.726 1.812 sum -3.467 -9.299 12.772 16.175 Atomic orbital electron populations 1.21692 0.94139 1.01491 1.01086 1.20867 0.94627 0.93493 0.85963 0.94685 1.21493 0.93121 0.82586 0.99167 0.89518 1.45969 1.60241 1.18031 1.08518 1.17069 0.79057 0.82244 0.83543 1.90787 1.50395 1.66501 1.36501 1.21426 0.86463 0.95830 1.13855 1.20748 0.97325 0.89934 1.07670 1.20909 0.88793 0.97761 0.99311 1.22972 0.99545 0.96314 0.97535 1.22778 0.97423 1.01103 0.95636 1.22939 0.99328 0.97930 0.95959 1.23726 0.86944 1.01197 1.05114 1.73103 1.28141 0.90160 1.21541 1.45741 1.05182 1.05281 1.50096 1.22433 0.90912 0.87234 1.05457 1.21723 0.95339 1.00762 0.97607 1.21934 0.99789 0.98906 0.95777 1.20483 0.83603 0.95600 0.94552 1.44264 1.02758 1.65395 1.19398 1.19348 0.97287 1.35373 0.85732 0.90933 1.25796 0.98964 0.99808 0.99074 1.70165 1.28073 1.43330 1.16060 0.85451 0.78648 0.78096 0.79684 1.18971 1.22495 1.22319 0.91266 0.93455 0.92888 0.75526 0.91002 0.88486 0.92026 0.90293 0.89517 0.92169 0.89014 0.77383 0.88377 0.86496 0.88927 0.91076 0.92483 0.91912 0.93126 0.98392 0.93737 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.76 71.98 0.56 -3.53 16 2 C 0.16 5.72 3.20 44.98 0.14 5.87 16 3 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.14 4.58 2.29 45.07 0.10 4.69 16 5 H 0.09 2.69 7.65 -2.39 -0.02 2.67 16 6 N -0.68 -21.23 3.46 -445.70 -1.54 -22.77 16 7 C 0.60 19.04 6.68 86.59 0.58 19.62 16 8 O -0.56 -20.91 16.82 -4.13 -0.07 -20.98 16 9 C -0.05 -1.39 6.71 40.79 0.27 -1.11 16 10 C -0.15 -3.91 5.49 -19.48 -0.11 -4.02 16 11 C -0.05 -1.17 4.12 -11.02 -0.05 -1.21 16 12 C -0.13 -2.49 7.58 31.12 0.24 -2.25 16 13 C -0.13 -2.23 8.08 31.12 0.25 -1.97 16 14 C -0.12 -2.45 7.62 31.12 0.24 -2.22 16 15 C 0.01 0.17 11.24 85.18 0.96 1.13 16 16 N -0.30 -7.94 11.90 -57.14 -0.68 -8.62 16 17 N -0.27 -7.24 3.75 -356.03 -1.33 -8.58 16 18 C 0.08 1.49 11.18 127.77 1.43 2.92 16 19 C -0.12 -3.78 5.58 30.62 0.17 -3.61 16 20 C -0.12 -4.47 5.93 30.67 0.18 -4.29 16 21 C 0.18 8.19 5.26 86.36 0.45 8.65 16 22 N -0.59 -26.27 2.62 -675.22 -1.77 -28.03 16 23 C -0.25 -12.05 8.44 84.03 0.71 -11.34 16 24 H 0.07 3.41 6.37 -2.91 -0.02 3.39 16 25 C -0.04 -2.09 4.92 84.86 0.42 -1.68 16 26 N -0.93 -52.50 11.54 21.65 0.25 -52.25 16 27 Si 0.95 42.74 29.58 68.60 2.03 44.77 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 30 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.05 1.70 7.70 -2.39 -0.02 1.68 16 33 H 0.05 1.68 6.35 -2.39 -0.02 1.67 16 34 H 0.41 13.71 7.76 -92.71 -0.72 12.99 16 35 H 0.07 2.05 7.94 -2.39 -0.02 2.03 16 36 H 0.10 1.63 7.19 -2.39 -0.02 1.61 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.63 8.03 -2.39 -0.02 1.61 16 42 H 0.21 3.50 7.68 -2.91 -0.02 3.47 16 43 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 1.73 7.73 -2.39 -0.02 1.71 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.05 1.85 7.53 -2.39 -0.02 1.83 16 50 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 51 H 0.04 2.28 6.47 -2.39 -0.02 2.26 16 52 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -63.51 407.48 3.63 -59.87 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.20 Total: 30.95 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.55 Total: 5.64 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -5.08 Total: -120.26 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.07 Total: -20.98 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -63.51 3.63 -59.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993335906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.064 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds