Wall clock time and date at job start Wed Apr 1 2020 04:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.70126 * 2 1 4 4 C 1.53189 * 109.59023 * 120.35194 * 2 1 3 5 5 H 1.09002 * 109.49754 * 294.38320 * 4 2 1 6 6 N 1.46504 * 109.49533 * 54.44131 * 4 2 1 7 7 C 1.34779 * 119.99873 * 205.00491 * 6 4 2 8 8 O 1.21628 * 119.99958 * 354.95145 * 7 6 4 9 9 C 1.47162 * 119.99720 * 174.95695 * 7 6 4 10 10 C 1.37208 * 127.04314 * 99.70855 * 9 7 6 11 11 C 1.40087 * 105.87941 * 180.09189 * 10 9 7 12 12 N 1.30100 * 107.73106 * 359.87543 * 11 10 9 13 13 N 1.28836 * 110.78304 * 359.82490 * 12 11 10 14 14 C 1.46492 * 125.15528 * 180.22472 * 13 12 11 15 15 C 1.50869 * 123.21358 * 179.69474 * 11 10 9 16 16 C 1.53393 * 108.18566 * 343.34048 * 15 11 10 17 17 C 1.53030 * 109.88224 * 50.71922 * 16 15 11 18 18 C 1.50387 * 129.90757 * 0.27841 * 10 9 7 19 19 C 1.53032 * 109.31651 * 174.42459 * 4 2 1 20 20 C 1.53044 * 109.53971 * 298.63640 * 19 4 2 21 21 C 1.52761 * 109.38093 * 61.23827 * 20 19 4 22 22 N 1.46925 * 109.58815 * 239.64598 * 2 1 3 23 23 C 1.36929 * 120.63047 * 6.57648 * 22 2 1 24 24 H 1.08003 * 120.00463 * 333.49142 * 23 22 2 25 25 C 1.38815 * 119.99759 * 153.48807 * 23 22 2 26 26 N 1.31614 * 120.00570 * 334.19246 * 25 23 22 27 27 Si 1.86804 * 119.99667 * 154.19414 * 25 23 22 28 28 H 1.48510 * 109.47005 * 269.99897 * 27 25 23 29 29 H 1.48502 * 109.47347 * 29.99832 * 27 25 23 30 30 H 1.48500 * 109.47266 * 150.00318 * 27 25 23 31 31 H 1.09002 * 109.46914 * 180.35301 * 1 2 3 32 32 H 1.09002 * 109.47363 * 300.35181 * 1 2 3 33 33 H 1.09002 * 109.47042 * 60.35796 * 1 2 3 34 34 H 0.96997 * 120.00118 * 24.99752 * 6 4 2 35 35 H 1.09007 * 109.47118 * 275.15489 * 14 13 12 36 36 H 1.09006 * 109.47257 * 35.15017 * 14 13 12 37 37 H 1.08992 * 109.47086 * 155.15547 * 14 13 12 38 38 H 1.09006 * 109.71770 * 103.00915 * 15 11 10 39 39 H 1.09002 * 109.72192 * 223.66537 * 15 11 10 40 40 H 1.09003 * 109.40576 * 170.84981 * 16 15 11 41 41 H 1.09003 * 109.40368 * 290.67952 * 16 15 11 42 42 H 1.09004 * 109.43062 * 48.62530 * 17 16 15 43 43 H 1.09001 * 109.44218 * 168.53639 * 17 16 15 44 44 H 1.08998 * 109.72988 * 283.28288 * 18 10 9 45 45 H 1.08992 * 109.73448 * 43.97459 * 18 10 9 46 46 H 1.09004 * 109.46154 * 58.65579 * 19 4 2 47 47 H 1.09005 * 109.46091 * 178.62860 * 19 4 2 48 48 H 1.08994 * 109.49975 * 181.31160 * 20 19 4 49 49 H 1.08997 * 109.49890 * 301.38124 * 20 19 4 50 50 H 1.08998 * 109.51239 * 185.70577 * 21 20 19 51 51 H 1.09004 * 109.43410 * 65.42717 * 21 20 19 52 52 H 0.97001 * 119.99275 * 353.98811 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2454 5 1 1.7659 -0.1667 2.1368 6 7 1.4509 -2.0676 1.3075 7 6 1.3279 -2.6957 2.4937 8 8 1.7912 -2.1923 3.4993 9 6 0.6331 -3.9907 2.5719 10 6 1.2081 -5.2354 2.6237 11 6 0.1455 -6.1461 2.6874 12 7 -0.9622 -5.4639 2.6755 13 7 -0.7201 -4.2000 2.6140 14 6 -1.7378 -3.1465 2.5883 15 6 0.3409 -7.6407 2.7515 16 6 1.7782 -7.9547 2.3175 17 6 2.7610 -7.0828 3.1023 18 6 2.6597 -5.6284 2.6218 19 6 3.5675 -0.8478 1.1702 20 6 3.9570 -1.6656 -0.0634 21 6 3.4645 -0.9518 -1.3210 22 7 2.0225 -0.6995 -1.1945 23 6 1.1537 -1.1135 -2.1685 24 1 0.1254 -1.3295 -1.9186 25 6 1.5945 -1.2555 -3.4771 26 7 2.6219 -0.5531 -3.9054 27 14 0.7296 -2.4437 -4.6302 28 1 1.3677 -3.7812 -4.5326 29 1 -0.7019 -2.5493 -4.2496 30 1 0.8356 -1.9454 -6.0251 31 1 -0.3633 -1.0277 0.0063 32 1 -0.3634 0.5193 0.8868 33 1 -0.3633 0.5083 -0.8932 34 1 1.1469 -2.5016 0.4951 35 1 -2.0781 -2.9949 1.5639 36 1 -2.5820 -3.4415 3.2117 37 1 -1.3106 -2.2194 2.9702 38 1 0.1803 -7.9892 3.7718 39 1 -0.3621 -8.1327 2.0792 40 1 1.9932 -9.0058 2.5100 41 1 1.8873 -7.7520 1.2521 42 1 2.5208 -7.1315 4.1644 43 1 3.7760 -7.4468 2.9430 44 1 3.0620 -5.5455 1.6122 45 1 3.2178 -4.9785 3.2956 46 1 4.0061 0.1476 1.0993 47 1 3.9378 -1.3448 2.0669 48 1 5.0412 -1.7693 -0.1037 49 1 3.4989 -2.6529 -0.0049 50 1 3.6504 -1.5796 -2.1924 51 1 3.9929 -0.0048 -1.4310 52 1 3.0160 0.1261 -3.3360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993405367.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:31 Heat of formation + Delta-G solvation = 46.693238 kcal Electronic energy + Delta-G solvation = -32866.535131 eV Core-core repulsion = 28867.431784 eV Total energy + Delta-G solvation = -3999.103347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.60286 -39.74570 -37.74662 -37.09500 -34.26527 -32.89374 -32.54853 -32.12250 -31.65010 -29.65362 -28.85891 -27.30487 -26.44874 -25.02478 -23.67607 -23.20132 -22.11336 -21.62869 -21.05800 -19.74034 -19.18134 -18.88949 -17.60638 -17.12576 -16.32855 -15.91514 -15.55755 -15.06055 -14.75068 -14.71240 -14.46971 -14.07547 -13.91817 -13.72510 -13.64521 -13.45101 -13.22152 -13.07868 -12.96072 -12.84017 -12.73624 -12.53502 -11.90152 -11.86275 -11.56972 -11.37041 -11.30929 -11.08657 -10.95387 -10.90743 -10.87009 -10.70824 -10.30189 -10.21920 -10.18024 -10.14410 -9.92000 -9.85569 -9.24016 -8.95563 -8.76864 -8.54349 -8.43540 -6.99912 -6.13657 -3.31450 1.73253 2.19984 2.64569 2.86788 3.44033 3.44577 3.45874 3.61594 4.23395 4.49193 4.72910 4.75029 4.82135 4.86168 5.01787 5.04439 5.07482 5.22308 5.26270 5.27926 5.37163 5.43578 5.47123 5.50045 5.51538 5.54448 5.59876 5.74711 5.80693 5.87185 5.91247 5.97340 6.02885 6.04358 6.09203 6.20323 6.21984 6.25091 6.31786 6.42297 6.47244 6.55496 6.60574 6.70992 6.76650 6.81540 6.86055 7.04080 7.14783 7.75504 7.90210 8.11598 8.31780 8.48771 9.00959 9.75525 10.18627 11.13765 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.004059 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.300488 B = 6895.912935 C = 7438.065306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.162 3.838 3 H 0.040 0.960 4 C 0.133 3.867 5 H 0.078 0.922 6 N -0.685 5.685 7 C 0.587 3.413 8 O -0.535 6.535 9 C -0.015 4.015 10 C -0.155 4.155 11 C 0.033 3.967 12 N -0.279 5.279 13 N -0.284 5.284 14 C 0.091 3.909 15 C -0.029 4.029 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.047 4.047 19 C -0.122 4.122 20 C -0.135 4.135 21 C 0.149 3.851 22 N -0.593 5.593 23 C -0.353 4.353 24 H 0.063 0.937 25 C -0.019 4.019 26 N -0.913 5.913 27 Si 1.061 2.939 28 H -0.293 1.293 29 H -0.293 1.293 30 H -0.290 1.290 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.016 0.984 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 -8.950 13.016 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.057 0.943 4 C 0.027 3.973 5 H 0.096 0.904 6 N -0.337 5.337 7 C 0.370 3.630 8 O -0.412 6.412 9 C -0.142 4.142 10 C -0.166 4.166 11 C -0.127 4.127 12 N -0.109 5.109 13 N -0.072 5.072 14 C -0.050 4.050 15 C -0.068 4.068 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.160 4.160 20 C -0.174 4.174 21 C 0.024 3.976 22 N -0.318 5.318 23 C -0.482 4.482 24 H 0.080 0.920 25 C -0.222 4.222 26 N -0.552 5.552 27 Si 0.891 3.109 28 H -0.221 1.221 29 H -0.220 1.220 30 H -0.216 1.216 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.034 0.966 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.030 -9.165 12.186 15.771 hybrid contribution 0.526 0.790 1.102 1.454 sum -3.504 -8.376 13.288 16.093 Atomic orbital electron populations 1.21771 0.95483 1.01356 1.00524 1.20694 0.93551 0.93711 0.86608 0.94265 1.21634 0.93235 0.82480 0.99938 0.90440 1.46055 1.60572 1.18304 1.08720 1.17027 0.79741 0.82110 0.84166 1.90802 1.49181 1.65412 1.35755 1.21019 0.84976 0.95835 1.12326 1.20277 0.97216 0.90115 1.08981 1.21806 0.88214 0.96946 1.05779 1.72754 1.27129 0.89873 1.21149 1.45629 1.04165 1.04491 1.52890 1.22122 0.90523 0.87660 1.04656 1.19974 0.97446 0.87183 1.02191 1.21577 0.93596 0.99498 1.00833 1.21561 0.99317 0.94242 1.00093 1.20005 0.90157 0.96428 1.01957 1.21775 0.95253 1.00560 0.98446 1.21942 0.99209 0.99655 0.96577 1.20906 0.84037 0.96918 0.95779 1.44238 1.02750 1.65222 1.19561 1.19954 0.94822 1.44531 0.88901 0.91966 1.25730 0.99938 1.01243 0.95297 1.70740 1.25835 1.20450 1.38187 0.83570 0.74886 0.76242 0.76188 1.22054 1.21962 1.21632 0.92891 0.94202 0.91629 0.75034 0.89479 0.88662 0.89068 0.90388 0.90275 0.91116 0.91328 0.91744 0.91347 0.90563 0.90799 0.91766 0.92573 0.93045 0.92476 0.90092 0.96571 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 7.71 37.16 0.29 -1.99 16 2 C 0.16 3.01 3.20 -67.60 -0.22 2.79 16 3 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 4 C 0.13 2.24 2.29 -67.81 -0.16 2.09 16 5 H 0.08 1.29 7.65 -51.93 -0.40 0.89 16 6 N -0.69 -11.29 3.45 -54.85 -0.19 -11.48 16 7 C 0.59 9.86 6.91 -12.64 -0.09 9.77 16 8 O -0.54 -10.32 16.81 5.25 0.09 -10.23 16 9 C -0.01 -0.23 6.70 -82.31 -0.55 -0.78 16 10 C -0.16 -2.32 6.02 -104.46 -0.63 -2.95 16 11 C 0.03 0.47 7.13 -82.55 -0.59 -0.12 16 12 N -0.28 -4.25 11.89 33.65 0.40 -3.85 16 13 N -0.28 -4.16 3.77 -64.10 -0.24 -4.40 16 14 C 0.09 0.99 11.22 59.84 0.67 1.67 16 15 C -0.03 -0.30 6.31 -27.60 -0.17 -0.48 16 16 C -0.12 -1.08 5.85 -26.51 -0.16 -1.23 16 17 C -0.11 -1.13 5.88 -26.45 -0.16 -1.29 16 18 C -0.05 -0.60 6.22 -27.77 -0.17 -0.78 16 19 C -0.12 -2.04 5.58 -26.69 -0.15 -2.19 16 20 C -0.13 -2.43 5.91 -26.83 -0.16 -2.59 16 21 C 0.15 3.22 4.68 -3.93 -0.02 3.21 16 22 N -0.59 -13.04 2.52 -165.03 -0.42 -13.46 16 23 C -0.35 -8.73 8.55 -15.06 -0.13 -8.86 16 24 H 0.06 1.53 6.20 -52.48 -0.33 1.20 16 25 C -0.02 -0.51 4.67 -17.43 -0.08 -0.59 16 26 N -0.91 -25.79 12.37 55.49 0.69 -25.11 16 27 Si 1.06 24.09 29.99 -169.99 -5.10 19.00 16 28 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.05 0.90 6.41 -51.93 -0.33 0.57 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.23 7.59 -51.93 -0.39 0.84 16 34 H 0.41 7.30 7.76 -40.82 -0.32 6.98 16 35 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.96 7.67 -51.93 -0.40 0.57 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.07 7.53 -51.93 -0.39 0.68 16 50 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 51 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 52 H 0.27 7.70 6.76 -40.82 -0.28 7.43 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -30.26 400.73 -9.89 -40.16 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.70 Total: 7.68 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.46 Total: -4.34 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.24 Total: -58.30 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.10 Total: 19.00 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.26 -9.89 -40.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993405367.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.849 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds