Wall clock time and date at job start Wed Apr 1 2020 04:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.59051 * 2 1 4 4 C 1.53201 * 109.58510 * 239.71230 * 2 1 3 5 5 H 1.08998 * 109.49724 * 305.56396 * 4 2 1 6 6 N 1.46497 * 109.49155 * 65.63030 * 4 2 1 7 7 C 1.34777 * 119.99493 * 204.99688 * 6 4 2 8 8 O 1.21574 * 120.00337 * 0.02562 * 7 6 4 9 9 C 1.47712 * 120.00123 * 180.27498 * 7 6 4 10 10 C 1.41500 * 126.52017 * 179.43906 * 9 7 6 11 11 C 1.35365 * 105.50610 * 179.87948 * 10 9 7 12 12 N 1.35039 * 107.22465 * 0.37913 * 11 10 9 13 13 C 1.46496 * 124.88172 * 179.76835 * 12 11 10 14 14 C 1.54265 * 110.03654 * 32.91124 * 13 12 11 15 15 C 1.54961 * 104.15970 * 217.13765 * 14 13 12 16 16 C 1.54889 * 102.78099 * 37.88372 * 15 14 13 17 17 C 1.53877 * 110.03495 * 275.68624 * 13 12 11 18 18 N 1.28472 * 110.23070 * 359.74746 * 12 11 10 19 19 C 1.53042 * 109.31031 * 185.57880 * 4 2 1 20 20 C 1.53035 * 109.53496 * 61.36685 * 19 4 2 21 21 C 1.53192 * 109.31770 * 298.63160 * 20 19 4 22 22 N 1.46926 * 108.77261 * 54.63712 * 21 20 19 23 23 C 1.36937 * 120.62665 * 126.41502 * 22 21 20 24 24 H 1.08001 * 119.99839 * 208.99698 * 23 22 21 25 25 C 1.38806 * 120.00139 * 29.00029 * 23 22 21 26 26 N 1.31616 * 120.00413 * 15.02884 * 25 23 22 27 27 Si 1.86808 * 119.99704 * 195.02785 * 25 23 22 28 28 H 1.48500 * 109.47070 * 89.99928 * 27 25 23 29 29 H 1.48500 * 109.46880 * 209.99604 * 27 25 23 30 30 H 1.48495 * 109.47023 * 329.99934 * 27 25 23 31 31 H 1.09005 * 109.46924 * 180.28480 * 1 2 3 32 32 H 1.08998 * 109.46690 * 300.28721 * 1 2 3 33 33 H 1.08993 * 109.46790 * 60.28672 * 1 2 3 34 34 H 0.96992 * 120.00943 * 24.99541 * 6 4 2 35 35 H 1.08002 * 127.24989 * 359.97438 * 10 9 7 36 36 H 1.07999 * 126.38899 * 180.10513 * 11 10 9 37 37 H 1.09009 * 110.01431 * 154.29929 * 13 12 11 38 38 H 1.08999 * 110.48245 * 335.77904 * 14 13 12 39 39 H 1.09000 * 110.48869 * 98.42215 * 14 13 12 40 40 H 1.09001 * 110.71533 * 279.56810 * 15 14 13 41 41 H 1.08998 * 110.92598 * 156.29675 * 15 14 13 42 42 H 1.09000 * 110.48678 * 203.40785 * 16 15 14 43 43 H 1.08992 * 110.59825 * 80.81999 * 16 15 14 44 44 H 1.08993 * 110.03419 * 238.57079 * 17 13 12 45 45 H 1.09000 * 110.03151 * 0.02562 * 17 13 12 46 46 H 1.08996 * 109.45596 * 181.38442 * 19 4 2 47 47 H 1.08996 * 109.45654 * 301.34577 * 19 4 2 48 48 H 1.09007 * 109.49730 * 178.68099 * 20 19 4 49 49 H 1.08996 * 109.52592 * 58.60674 * 20 19 4 50 50 H 1.09000 * 109.58892 * 294.85167 * 21 20 19 51 51 H 1.08996 * 109.58661 * 174.42594 * 21 20 19 52 52 H 0.96995 * 120.00296 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0436 -0.7280 -1.2464 5 1 1.6025 -1.7236 -1.2938 6 7 1.6706 0.0297 -2.4434 7 6 1.5473 -0.6004 -3.6284 8 8 1.7451 -1.7976 -3.7038 9 6 1.1771 0.1644 -4.8367 10 6 1.0212 -0.3516 -6.1450 11 6 0.6784 0.7086 -6.9136 12 7 0.6422 1.7917 -6.1079 13 6 0.3157 3.1510 -6.5456 14 6 -0.7129 3.1037 -7.6944 15 6 -0.2824 4.2564 -8.6363 16 6 1.2638 4.1871 -8.5782 17 6 1.5719 3.8401 -7.1070 18 7 0.9347 1.4583 -4.9021 19 6 3.5676 -0.8467 -1.1712 20 6 3.9569 -1.6659 0.0614 21 6 3.4651 -0.9487 1.3226 22 7 2.0226 -0.7011 1.1936 23 6 1.1538 -1.1154 2.1676 24 1 0.1359 -1.3694 1.9109 25 6 1.5813 -1.2090 3.4849 26 7 2.7045 -0.6314 3.8549 27 14 0.5623 -2.1548 4.7326 28 1 0.9962 -3.5749 4.7516 29 1 0.7534 -1.5608 6.0801 30 1 -0.8727 -2.0807 4.3578 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3632 0.5183 0.8874 33 1 -0.3632 0.5093 -0.8925 34 1 1.5124 0.9847 -2.3833 35 1 1.1475 -1.3759 -6.4631 36 1 0.4762 0.6923 -7.9744 37 1 -0.0838 3.7262 -5.7102 38 1 -0.6605 2.1470 -8.2140 39 1 -1.7191 3.2772 -7.3129 40 1 -0.6406 5.2151 -8.2612 41 1 -0.6390 4.0831 -9.6517 42 1 1.6990 5.1511 -8.8419 43 1 1.6379 3.4067 -9.2407 44 1 1.7815 4.7499 -6.5447 45 1 2.4243 3.1628 -7.0541 46 1 3.9378 -1.3424 -2.0685 47 1 4.0061 0.1486 -1.0992 48 1 5.0412 -1.7699 0.1015 49 1 3.4988 -2.6531 0.0022 50 1 3.9903 0.0002 1.4317 51 1 3.6518 -1.5745 2.1952 52 1 3.0035 -0.6971 4.7753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993416134.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:33 Heat of formation + Delta-G solvation = 55.094814 kcal Electronic energy + Delta-G solvation = -30892.360211 eV Core-core repulsion = 26893.621184 eV Total energy + Delta-G solvation = -3998.739027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.84541 -39.47608 -38.48362 -37.41847 -34.20783 -32.77033 -32.38933 -31.61065 -30.87498 -29.40787 -29.23141 -28.05608 -26.15161 -24.97381 -23.74001 -22.59522 -21.67625 -21.10764 -20.60529 -20.18645 -19.73403 -19.23669 -18.03812 -16.99996 -16.42295 -16.23144 -15.60106 -15.56411 -15.11033 -14.83468 -14.36370 -14.23920 -13.97954 -13.70684 -13.61008 -13.49384 -13.23386 -13.06572 -12.71962 -12.64116 -12.46409 -12.12746 -11.79529 -11.76406 -11.63021 -11.47223 -11.41176 -11.20427 -11.03927 -10.97835 -10.85943 -10.71878 -10.49361 -10.21652 -10.07889 -9.97740 -9.91376 -9.58002 -9.35523 -9.29975 -9.13692 -8.54765 -8.38961 -6.62257 -5.74260 -3.18524 1.60483 2.08165 2.21426 3.41442 3.46334 3.48606 3.52316 3.64203 3.73510 3.89576 4.22954 4.45585 4.53816 4.54374 4.67068 4.75607 4.78683 4.86675 4.96431 5.14901 5.26997 5.29660 5.36299 5.42211 5.45035 5.47751 5.57533 5.58480 5.61402 5.66916 5.68205 5.73069 5.88383 6.05470 6.17648 6.29926 6.31311 6.42999 6.50386 6.61950 6.64222 6.71750 6.80756 6.83523 6.94445 7.06017 7.15708 7.47057 7.71562 7.73862 7.86595 8.00385 8.48316 8.55879 9.25448 9.88092 10.44595 11.34266 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002172 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.296976 B =12886.601384 C =13205.491500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.087 0.913 6 N -0.704 5.704 7 C 0.600 3.400 8 O -0.537 6.537 9 C -0.011 4.011 10 C -0.179 4.179 11 C -0.023 4.023 12 N -0.277 5.277 13 C 0.143 3.857 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.125 4.125 17 C -0.136 4.136 18 N -0.261 5.261 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.582 5.582 23 C -0.249 4.249 24 H 0.071 0.929 25 C 0.002 3.998 26 N -0.903 5.903 27 Si 0.902 3.098 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.401 0.599 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.019 0.981 51 H 0.090 0.910 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 10.690 -26.737 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.105 0.895 6 N -0.354 5.354 7 C 0.383 3.617 8 O -0.412 6.412 9 C -0.172 4.172 10 C -0.207 4.207 11 C -0.165 4.165 12 N -0.065 5.065 13 C 0.042 3.958 14 C -0.174 4.174 15 C -0.160 4.160 16 C -0.163 4.163 17 C -0.175 4.175 18 N -0.096 5.096 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.043 3.957 22 N -0.306 5.306 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.196 4.196 26 N -0.548 5.548 27 Si 0.733 3.267 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.236 0.764 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.037 0.963 51 H 0.108 0.892 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.875 10.912 -25.934 28.401 hybrid contribution -0.421 -0.667 0.165 0.806 sum -4.296 10.245 -25.769 28.061 Atomic orbital electron populations 1.21821 0.95684 1.01697 1.00232 1.20554 0.93250 0.93569 0.86585 0.95462 1.21820 0.95145 0.96836 0.83661 0.89478 1.45998 1.68994 1.12518 1.07895 1.16900 0.77115 0.86104 0.81538 1.90783 1.51260 1.13959 1.85233 1.22121 1.09004 0.90147 0.95918 1.21774 1.07045 1.00314 0.91612 1.22662 1.08321 0.86639 0.98878 1.45696 1.47911 1.08388 1.04513 1.22329 0.96447 0.78253 0.98760 1.22850 0.98462 1.00834 0.95302 1.22492 0.95571 0.98245 0.99672 1.22385 0.95969 1.02225 0.95684 1.22600 0.96833 1.01316 0.96728 1.73526 1.17207 1.15590 1.03288 1.21765 0.95365 1.00070 0.98366 1.22185 0.99193 0.99716 0.96878 1.20859 0.83053 0.97236 0.94522 1.44047 1.03184 1.64996 1.18323 1.19195 0.94823 1.37638 0.86177 0.91141 1.25074 0.97873 0.99753 0.96922 1.70021 1.23349 1.44567 1.16855 0.86285 0.79845 0.79823 0.80786 1.21448 1.21847 1.20448 0.92655 0.91825 0.94234 0.76418 0.82177 0.80522 0.86978 0.89838 0.89909 0.90696 0.90537 0.90810 0.91159 0.89834 0.90499 0.93129 0.92774 0.93032 0.92484 0.96337 0.89223 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 7.84 37.16 0.29 -2.40 16 2 C 0.17 3.55 3.03 -67.59 -0.21 3.35 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.13 2.54 2.00 -67.81 -0.14 2.41 16 5 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 6 N -0.70 -11.91 4.57 -54.67 -0.25 -12.16 16 7 C 0.60 10.53 7.79 -12.39 -0.10 10.43 16 8 O -0.54 -11.05 16.59 5.30 0.09 -10.96 16 9 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 10 C -0.18 -2.21 10.81 -39.36 -0.43 -2.64 16 11 C -0.02 -0.21 10.38 -17.17 -0.18 -0.39 16 12 N -0.28 -2.77 3.13 -53.74 -0.17 -2.94 16 13 C 0.14 0.95 3.87 -66.81 -0.26 0.69 16 14 C -0.14 -0.60 6.36 -25.03 -0.16 -0.76 16 15 C -0.12 -0.38 6.91 -24.70 -0.17 -0.55 16 16 C -0.12 -0.48 6.83 -25.07 -0.17 -0.65 16 17 C -0.14 -0.77 6.60 -25.61 -0.17 -0.94 16 18 N -0.26 -3.45 11.67 33.42 0.39 -3.06 16 19 C -0.12 -2.24 5.46 -26.69 -0.15 -2.38 16 20 C -0.14 -2.87 6.08 -26.61 -0.16 -3.03 16 21 C 0.17 4.10 5.29 -3.71 -0.02 4.08 16 22 N -0.58 -14.57 2.99 -164.77 -0.49 -15.07 16 23 C -0.25 -6.74 8.61 -15.06 -0.13 -6.87 16 24 H 0.07 1.88 6.20 -52.49 -0.33 1.55 16 25 C 0.00 0.06 4.96 -17.43 -0.09 -0.02 16 26 N -0.90 -26.17 11.14 55.49 0.62 -25.56 16 27 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.05 1.13 7.40 -51.93 -0.38 0.75 16 32 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 33 H 0.04 0.67 7.78 -51.93 -0.40 0.26 16 34 H 0.40 6.15 8.33 -40.82 -0.34 5.81 16 35 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.18 0.98 6.84 -52.49 -0.36 0.62 16 37 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.08 0.35 5.86 -51.93 -0.30 0.04 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 52 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -32.55 404.77 -10.24 -42.79 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.69 Total: 4.43 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.81 Total: -0.44 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.10 Total: -58.78 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.55 -10.24 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993416134.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.885 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds