Wall clock time and date at job start Wed Apr 1 2020 04:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.59051 * 2 1 4 4 C 1.53201 * 109.58510 * 239.71230 * 2 1 3 5 5 H 1.08998 * 109.49724 * 305.56396 * 4 2 1 6 6 N 1.46497 * 109.49155 * 65.63030 * 4 2 1 7 7 C 1.34777 * 119.99493 * 204.99688 * 6 4 2 8 8 O 1.21574 * 120.00337 * 0.02562 * 7 6 4 9 9 C 1.47712 * 120.00123 * 180.27498 * 7 6 4 10 10 C 1.41500 * 126.52017 * 179.43906 * 9 7 6 11 11 C 1.35365 * 105.50610 * 179.87948 * 10 9 7 12 12 N 1.35039 * 107.22465 * 0.37913 * 11 10 9 13 13 C 1.46496 * 124.88172 * 179.76835 * 12 11 10 14 14 C 1.54265 * 110.03654 * 32.91124 * 13 12 11 15 15 C 1.54961 * 104.15970 * 217.13765 * 14 13 12 16 16 C 1.54889 * 102.78099 * 37.88372 * 15 14 13 17 17 C 1.53877 * 110.03495 * 275.68624 * 13 12 11 18 18 N 1.28472 * 110.23070 * 359.74746 * 12 11 10 19 19 C 1.53042 * 109.31031 * 185.57880 * 4 2 1 20 20 C 1.53035 * 109.53496 * 61.36685 * 19 4 2 21 21 C 1.53192 * 109.31770 * 298.63160 * 20 19 4 22 22 N 1.46926 * 108.77261 * 54.63712 * 21 20 19 23 23 C 1.36937 * 120.62665 * 126.41502 * 22 21 20 24 24 H 1.08001 * 119.99839 * 208.99698 * 23 22 21 25 25 C 1.38806 * 120.00139 * 29.00029 * 23 22 21 26 26 N 1.31616 * 120.00413 * 15.02884 * 25 23 22 27 27 Si 1.86808 * 119.99704 * 195.02785 * 25 23 22 28 28 H 1.48500 * 109.47070 * 89.99928 * 27 25 23 29 29 H 1.48500 * 109.46880 * 209.99604 * 27 25 23 30 30 H 1.48495 * 109.47023 * 329.99934 * 27 25 23 31 31 H 1.09005 * 109.46924 * 180.28480 * 1 2 3 32 32 H 1.08998 * 109.46690 * 300.28721 * 1 2 3 33 33 H 1.08993 * 109.46790 * 60.28672 * 1 2 3 34 34 H 0.96992 * 120.00943 * 24.99541 * 6 4 2 35 35 H 1.08002 * 127.24989 * 359.97438 * 10 9 7 36 36 H 1.07999 * 126.38899 * 180.10513 * 11 10 9 37 37 H 1.09009 * 110.01431 * 154.29929 * 13 12 11 38 38 H 1.08999 * 110.48245 * 335.77904 * 14 13 12 39 39 H 1.09000 * 110.48869 * 98.42215 * 14 13 12 40 40 H 1.09001 * 110.71533 * 279.56810 * 15 14 13 41 41 H 1.08998 * 110.92598 * 156.29675 * 15 14 13 42 42 H 1.09000 * 110.48678 * 203.40785 * 16 15 14 43 43 H 1.08992 * 110.59825 * 80.81999 * 16 15 14 44 44 H 1.08993 * 110.03419 * 238.57079 * 17 13 12 45 45 H 1.09000 * 110.03151 * 0.02562 * 17 13 12 46 46 H 1.08996 * 109.45596 * 181.38442 * 19 4 2 47 47 H 1.08996 * 109.45654 * 301.34577 * 19 4 2 48 48 H 1.09007 * 109.49730 * 178.68099 * 20 19 4 49 49 H 1.08996 * 109.52592 * 58.60674 * 20 19 4 50 50 H 1.09000 * 109.58892 * 294.85167 * 21 20 19 51 51 H 1.08996 * 109.58661 * 174.42594 * 21 20 19 52 52 H 0.96995 * 120.00296 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0436 -0.7280 -1.2464 5 1 1.6025 -1.7236 -1.2938 6 7 1.6706 0.0297 -2.4434 7 6 1.5473 -0.6004 -3.6284 8 8 1.7451 -1.7976 -3.7038 9 6 1.1771 0.1644 -4.8367 10 6 1.0212 -0.3516 -6.1450 11 6 0.6784 0.7086 -6.9136 12 7 0.6422 1.7917 -6.1079 13 6 0.3157 3.1510 -6.5456 14 6 -0.7129 3.1037 -7.6944 15 6 -0.2824 4.2564 -8.6363 16 6 1.2638 4.1871 -8.5782 17 6 1.5719 3.8401 -7.1070 18 7 0.9347 1.4583 -4.9021 19 6 3.5676 -0.8467 -1.1712 20 6 3.9569 -1.6659 0.0614 21 6 3.4651 -0.9487 1.3226 22 7 2.0226 -0.7011 1.1936 23 6 1.1538 -1.1154 2.1676 24 1 0.1359 -1.3694 1.9109 25 6 1.5813 -1.2090 3.4849 26 7 2.7045 -0.6314 3.8549 27 14 0.5623 -2.1548 4.7326 28 1 0.9962 -3.5749 4.7516 29 1 0.7534 -1.5608 6.0801 30 1 -0.8727 -2.0807 4.3578 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3632 0.5183 0.8874 33 1 -0.3632 0.5093 -0.8925 34 1 1.5124 0.9847 -2.3833 35 1 1.1475 -1.3759 -6.4631 36 1 0.4762 0.6923 -7.9744 37 1 -0.0838 3.7262 -5.7102 38 1 -0.6605 2.1470 -8.2140 39 1 -1.7191 3.2772 -7.3129 40 1 -0.6406 5.2151 -8.2612 41 1 -0.6390 4.0831 -9.6517 42 1 1.6990 5.1511 -8.8419 43 1 1.6379 3.4067 -9.2407 44 1 1.7815 4.7499 -6.5447 45 1 2.4243 3.1628 -7.0541 46 1 3.9378 -1.3424 -2.0685 47 1 4.0061 0.1486 -1.0992 48 1 5.0412 -1.7699 0.1015 49 1 3.4988 -2.6531 0.0022 50 1 3.9903 0.0002 1.4317 51 1 3.6518 -1.5745 2.1952 52 1 3.0035 -0.6971 4.7753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993416134.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:32 Heat of formation + Delta-G solvation = 35.880272 kcal Electronic energy + Delta-G solvation = -30893.193416 eV Core-core repulsion = 26893.621184 eV Total energy + Delta-G solvation = -3999.572233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.71860 -40.93563 -39.26164 -38.80304 -35.91405 -34.30854 -33.55590 -33.24847 -31.84615 -30.90963 -29.73632 -28.85607 -27.81118 -26.88477 -25.00951 -23.45463 -23.08858 -22.33485 -21.54157 -21.32097 -20.88304 -20.58129 -18.92059 -18.28923 -17.89097 -17.32123 -17.02841 -16.63880 -16.37413 -15.72698 -15.70185 -15.59514 -15.49135 -15.18024 -14.85211 -14.60031 -14.46026 -14.30965 -14.26277 -13.83943 -13.36096 -13.25168 -13.08912 -12.83207 -12.72675 -12.64680 -12.54937 -12.37999 -12.11799 -12.03297 -12.01406 -11.96293 -11.85134 -11.78426 -11.75405 -11.65715 -11.47972 -11.27410 -11.06869 -10.52577 -10.28266 -10.10590 -9.90703 -8.66263 -7.84742 -5.31312 0.54097 1.19553 1.46691 1.47759 1.49503 1.57124 2.14780 2.39059 2.54510 3.21762 3.30245 3.50882 3.56251 3.66227 3.82357 3.87970 3.90576 4.00908 4.14190 4.20644 4.32374 4.35002 4.39686 4.44155 4.49314 4.51188 4.60292 4.65438 4.73085 4.76180 4.79638 4.86243 4.87946 4.90270 5.01769 5.02735 5.07030 5.12700 5.19812 5.21455 5.24391 5.26189 5.36881 5.40701 5.42600 5.47698 5.58827 5.70614 5.76794 5.91392 6.41899 6.48290 6.93635 7.15993 7.20471 7.85979 8.38256 9.22218 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002172 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.296976 B =12886.601384 C =13205.491500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.166 3.834 3 H 0.030 0.970 4 C 0.147 3.853 5 H 0.062 0.938 6 N -0.697 5.697 7 C 0.600 3.400 8 O -0.574 6.574 9 C -0.043 4.043 10 C -0.200 4.200 11 C 0.001 3.999 12 N -0.267 5.267 13 C 0.132 3.868 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.134 4.134 18 N -0.274 5.274 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.175 3.825 22 N -0.599 5.599 23 C -0.253 4.253 24 H 0.072 0.928 25 C -0.050 4.050 26 N -0.934 5.934 27 Si 0.963 3.037 28 H -0.288 1.288 29 H -0.295 1.295 30 H -0.269 1.269 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.163 0.837 36 H 0.221 0.779 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.046 0.954 50 H 0.004 0.996 51 H 0.059 0.941 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 11.997 -29.727 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.048 0.952 4 C 0.040 3.960 5 H 0.080 0.920 6 N -0.347 5.347 7 C 0.386 3.614 8 O -0.452 6.452 9 C -0.201 4.201 10 C -0.228 4.228 11 C -0.142 4.142 12 N -0.055 5.055 13 C 0.033 3.967 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.172 4.172 18 N -0.111 5.111 19 C -0.148 4.148 20 C -0.168 4.168 21 C 0.049 3.951 22 N -0.323 5.323 23 C -0.383 4.383 24 H 0.090 0.910 25 C -0.245 4.245 26 N -0.580 5.580 27 Si 0.792 3.208 28 H -0.215 1.215 29 H -0.221 1.221 30 H -0.194 1.194 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.180 0.820 36 H 0.237 0.763 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.065 0.935 50 H 0.022 0.978 51 H 0.077 0.923 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.080 12.251 -28.951 31.844 hybrid contribution -0.069 -0.958 0.975 1.369 sum -5.149 11.293 -27.976 30.605 Atomic orbital electron populations 1.21716 0.94533 1.01139 1.01032 1.20673 0.94239 0.93344 0.85812 0.95220 1.21382 0.95120 0.95541 0.83920 0.91981 1.45805 1.68985 1.12717 1.07147 1.17255 0.76102 0.85838 0.82173 1.90752 1.52940 1.15618 1.85885 1.21790 1.11716 0.91001 0.95616 1.21970 1.08262 1.01482 0.91102 1.23200 1.05577 0.85161 1.00269 1.46113 1.45942 1.09785 1.03703 1.22738 0.97723 0.76586 0.99668 1.22882 0.97822 1.01793 0.94504 1.22484 0.94795 0.97942 1.00073 1.22382 0.96647 1.02734 0.94107 1.22579 0.95555 1.00824 0.98270 1.73458 1.17704 1.14812 1.05130 1.21688 0.95130 1.00306 0.97678 1.22023 1.00439 0.98762 0.95591 1.20671 0.83048 0.96201 0.95138 1.44280 1.03264 1.65692 1.19089 1.19465 0.95153 1.36884 0.86761 0.90991 1.25784 0.99122 1.00963 0.98669 1.70164 1.24905 1.46080 1.16847 0.85321 0.78938 0.78211 0.78315 1.21527 1.22148 1.19365 0.93808 0.92992 0.91393 0.75317 0.81963 0.76297 0.87143 0.89109 0.89474 0.90201 0.89181 0.90073 0.90817 0.89526 0.92340 0.92620 0.91833 0.90736 0.93479 0.97835 0.92283 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 7.84 71.98 0.56 -4.39 16 2 C 0.17 7.05 3.03 44.98 0.14 7.19 16 3 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.15 5.72 2.00 45.07 0.09 5.81 16 5 H 0.06 2.77 7.58 -2.39 -0.02 2.75 16 6 N -0.70 -23.38 4.57 -445.15 -2.03 -25.42 16 7 C 0.60 21.16 7.79 86.75 0.68 21.83 16 8 O -0.57 -24.02 16.59 -3.95 -0.07 -24.08 16 9 C -0.04 -1.25 7.13 42.46 0.30 -0.95 16 10 C -0.20 -4.69 10.81 22.41 0.24 -4.45 16 11 C 0.00 0.01 10.38 83.54 0.87 0.88 16 12 N -0.27 -4.76 3.13 -323.94 -1.02 -5.78 16 13 C 0.13 1.43 3.87 45.72 0.18 1.61 16 14 C -0.13 -0.70 6.36 31.69 0.20 -0.50 16 15 C -0.12 -0.31 6.91 31.91 0.22 -0.08 16 16 C -0.12 -0.55 6.83 31.67 0.22 -0.33 16 17 C -0.13 -1.22 6.60 31.32 0.21 -1.01 16 18 N -0.27 -6.94 11.67 -48.18 -0.56 -7.50 16 19 C -0.11 -4.15 5.46 30.62 0.17 -3.98 16 20 C -0.13 -5.29 6.08 30.67 0.19 -5.11 16 21 C 0.17 8.71 5.29 86.36 0.46 9.17 16 22 N -0.60 -30.59 2.99 -675.21 -2.02 -32.61 16 23 C -0.25 -13.91 8.61 84.03 0.72 -13.19 16 24 H 0.07 3.88 6.20 -2.91 -0.02 3.86 16 25 C -0.05 -2.83 4.96 84.86 0.42 -2.40 16 26 N -0.93 -55.51 11.14 21.65 0.24 -55.27 16 27 Si 0.96 45.70 29.58 68.60 2.03 47.73 16 28 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 29 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 30 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 31 H 0.04 1.79 7.40 -2.38 -0.02 1.77 16 32 H 0.05 2.13 7.66 -2.39 -0.02 2.11 16 33 H 0.07 2.23 7.78 -2.39 -0.02 2.21 16 34 H 0.41 12.30 8.33 -92.71 -0.77 11.53 16 35 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.22 1.43 6.84 -2.91 -0.02 1.41 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.09 0.37 5.86 -2.39 -0.01 0.35 16 39 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.77 7.92 -2.39 -0.02 0.75 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 51 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 52 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -72.33 404.77 2.57 -69.75 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.14 Total: 23.08 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.85 Total: 10.09 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.39 Total: -126.57 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.33 2.57 -69.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993416134.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.635 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds