Wall clock time and date at job start Wed Apr 1 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58587 * 2 1 4 4 C 1.53197 * 109.58822 * 120.28641 * 2 1 3 5 5 H 1.09001 * 109.49284 * 54.60898 * 4 2 1 6 6 N 1.46498 * 109.52009 * 294.53393 * 4 2 1 7 7 C 1.34782 * 119.99923 * 155.14624 * 6 4 2 8 8 O 1.21279 * 119.99733 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99824 * 179.97438 * 7 6 4 10 10 C 1.50705 * 109.46942 * 179.97438 * 9 7 6 11 11 C 1.40061 * 126.10077 * 265.02266 * 10 9 7 12 12 N 1.31023 * 108.25012 * 179.97438 * 11 10 9 13 13 N 1.39647 * 108.13369 * 359.96668 * 12 11 10 14 14 C 1.34747 * 126.09893 * 84.71634 * 10 9 7 15 15 C 1.50870 * 127.76511 * 0.66968 * 14 10 9 16 16 C 1.53439 * 108.23382 * 163.85922 * 15 14 10 17 17 C 1.53145 * 109.19166 * 48.34971 * 16 15 14 18 18 C 1.46589 * 127.55108 * 180.10622 * 13 12 11 19 19 C 1.53032 * 109.31405 * 174.56208 * 4 2 1 20 20 C 1.53037 * 109.53258 * 298.64150 * 19 4 2 21 21 C 1.53172 * 109.32608 * 61.37098 * 20 19 4 22 22 N 1.46932 * 109.70163 * 239.64286 * 2 1 3 23 23 C 1.36935 * 120.63225 * 6.51672 * 22 2 1 24 24 H 1.07999 * 119.99775 * 330.91275 * 23 22 2 25 25 C 1.38807 * 120.00040 * 150.91462 * 23 22 2 26 26 N 1.31621 * 119.99951 * 160.74391 * 25 23 22 27 27 Si 1.86799 * 119.99985 * 340.74551 * 25 23 22 28 28 H 1.48502 * 109.47406 * 92.29490 * 27 25 23 29 29 H 1.48504 * 109.47139 * 212.29631 * 27 25 23 30 30 H 1.48494 * 109.47265 * 332.29359 * 27 25 23 31 31 H 1.08993 * 109.47437 * 299.71262 * 1 2 3 32 32 H 1.09001 * 109.47496 * 59.71726 * 1 2 3 33 33 H 1.09006 * 109.47345 * 179.71561 * 1 2 3 34 34 H 0.96998 * 120.00358 * 335.14159 * 6 4 2 35 35 H 1.09000 * 109.47182 * 299.99821 * 9 7 6 36 36 H 1.08998 * 109.47391 * 59.99792 * 9 7 6 37 37 H 1.08002 * 125.86880 * 359.95754 * 11 10 9 38 38 H 1.09001 * 109.85417 * 44.07545 * 15 14 10 39 39 H 1.09005 * 109.56912 * 283.47627 * 15 14 10 40 40 H 1.08999 * 109.51496 * 288.44031 * 16 15 14 41 41 H 1.09001 * 109.56402 * 168.29819 * 16 15 14 42 42 H 1.09003 * 109.45776 * 170.53691 * 17 16 15 43 43 H 1.09008 * 109.45460 * 50.59267 * 17 16 15 44 44 H 1.08998 * 109.58386 * 282.44990 * 18 13 12 45 45 H 1.08994 * 109.58086 * 42.86159 * 18 13 12 46 46 H 1.09002 * 109.46020 * 58.65640 * 19 4 2 47 47 H 1.08996 * 109.46310 * 178.62544 * 19 4 2 48 48 H 1.08997 * 109.50190 * 181.30774 * 20 19 4 49 49 H 1.08999 * 109.49839 * 301.41163 * 20 19 4 50 50 H 1.09000 * 109.59035 * 185.57760 * 21 20 19 51 51 H 1.08997 * 109.59091 * 65.14319 * 21 20 19 52 52 H 0.97000 * 119.99778 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6049 -1.7247 1.2921 6 7 1.6675 0.0273 2.4440 7 6 1.5472 -0.6042 3.6287 8 8 1.7498 -1.7977 3.7029 9 6 1.1609 0.1727 4.8608 10 6 1.0953 -0.7600 6.0427 11 6 -0.0544 -1.3934 6.5313 12 7 0.2867 -2.1222 7.5654 13 7 1.6610 -1.9760 7.7658 14 6 2.1333 -1.1379 6.8144 15 6 3.5768 -0.7165 6.6925 16 6 4.2923 -1.0692 8.0032 17 6 3.9567 -2.5133 8.3872 18 6 2.4844 -2.6042 8.8032 19 6 3.5678 -0.8435 1.1729 20 6 3.9601 -1.6608 -0.0601 21 6 3.4685 -0.9436 -1.3211 22 7 2.0253 -0.6991 -1.1936 23 6 1.1584 -1.1151 -2.1686 24 1 0.1413 -1.3729 -1.9126 25 6 1.5869 -1.2056 -3.4858 26 7 0.9166 -1.9417 -4.3467 27 14 3.1148 -0.2828 -4.0364 28 1 4.3016 -1.1652 -3.9018 29 1 2.9610 0.1270 -5.4555 30 1 3.2964 0.9236 -3.1898 31 1 -0.3634 0.5093 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3634 -1.0277 -0.0051 34 1 1.5052 0.9817 2.3846 35 1 1.9040 0.9474 5.0497 36 1 0.1854 0.6345 4.7082 37 1 -1.0507 -1.2973 6.1256 38 1 3.6354 0.3580 6.5190 39 1 4.0438 -1.2489 5.8638 40 1 3.9588 -0.3957 8.7927 41 1 5.3694 -0.9688 7.8696 42 1 4.5887 -2.8241 9.2191 43 1 4.1341 -3.1667 7.5329 44 1 2.3389 -2.0840 9.7499 45 1 2.1997 -3.6507 8.9116 46 1 4.0045 0.1527 1.1022 47 1 3.9380 -1.3394 2.0701 48 1 5.0446 -1.7625 -0.0992 49 1 3.5034 -2.6488 -0.0021 50 1 3.6575 -1.5684 -2.1940 51 1 3.9920 0.0064 -1.4288 52 1 1.2162 -2.0052 -5.2671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993475915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:07 Heat of formation + Delta-G solvation = 52.359917 kcal Electronic energy + Delta-G solvation = -31426.836235 eV Core-core repulsion = 27427.978614 eV Total energy + Delta-G solvation = -3998.857622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.71544 -39.64996 -37.83788 -36.76818 -34.35165 -33.49661 -32.72945 -31.72750 -30.82863 -30.45702 -29.64981 -26.83842 -25.98881 -24.83937 -24.49969 -22.73816 -22.33316 -20.92816 -20.77288 -20.07375 -19.52202 -18.90532 -16.91505 -16.67863 -16.40960 -15.90092 -15.72653 -15.22500 -15.08491 -14.74087 -14.58034 -14.41213 -14.34961 -14.02799 -13.66205 -13.53855 -13.50122 -13.24044 -13.04573 -12.73882 -12.41355 -12.21847 -12.03097 -11.87288 -11.79988 -11.47242 -11.39178 -11.33733 -11.31194 -11.23764 -10.88483 -10.65661 -10.61089 -10.39690 -10.30894 -9.96381 -9.71453 -9.47904 -9.42653 -9.26595 -8.73162 -8.56829 -8.37393 -6.95828 -5.93176 -3.31894 1.79848 2.35948 2.66398 2.91813 3.32772 3.48267 3.50787 3.56485 4.05022 4.23944 4.32245 4.40532 4.53781 4.72591 4.83466 4.90661 4.97330 4.98055 5.08832 5.14085 5.20484 5.22877 5.30026 5.38534 5.40771 5.45305 5.48475 5.49304 5.55542 5.60289 5.74377 5.75255 5.81957 5.91935 6.04067 6.07243 6.22224 6.24754 6.32188 6.43856 6.49599 6.53380 6.59640 6.68510 6.73842 6.83766 6.91582 6.98336 7.07918 7.66944 7.80525 7.97552 8.35963 8.53976 8.94197 9.72993 10.09300 11.22285 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.002445 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.456527 B =11449.656794 C =12062.078350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 H 0.031 0.969 4 C 0.131 3.869 5 H 0.088 0.912 6 N -0.724 5.724 7 C 0.509 3.491 8 O -0.533 6.533 9 C -0.060 4.060 10 C -0.216 4.216 11 C 0.061 3.939 12 N -0.299 5.299 13 N -0.372 5.372 14 C 0.103 3.897 15 C -0.061 4.061 16 C -0.125 4.125 17 C -0.138 4.138 18 C 0.135 3.865 19 C -0.117 4.117 20 C -0.132 4.132 21 C 0.123 3.877 22 N -0.598 5.598 23 C -0.260 4.260 24 H 0.092 0.908 25 C 0.025 3.975 26 N -0.909 5.909 27 Si 0.883 3.117 28 H -0.289 1.289 29 H -0.304 1.304 30 H -0.271 1.271 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.181 0.819 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.025 0.975 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 6.358 26.213 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.049 0.951 4 C 0.025 3.975 5 H 0.106 0.894 6 N -0.375 5.375 7 C 0.295 3.705 8 O -0.409 6.409 9 C -0.101 4.101 10 C -0.227 4.227 11 C -0.125 4.125 12 N -0.119 5.119 13 N -0.155 5.155 14 C -0.024 4.024 15 C -0.100 4.100 16 C -0.163 4.163 17 C -0.176 4.176 18 C 0.014 3.986 19 C -0.155 4.155 20 C -0.172 4.172 21 C -0.002 4.002 22 N -0.322 5.322 23 C -0.388 4.388 24 H 0.109 0.891 25 C -0.174 4.174 26 N -0.551 5.551 27 Si 0.714 3.286 28 H -0.216 1.216 29 H -0.233 1.233 30 H -0.196 1.196 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.198 0.802 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.043 0.957 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.047 4.532 27.125 28.158 hybrid contribution 1.047 1.352 -1.180 2.078 sum 7.094 5.884 25.945 27.533 Atomic orbital electron populations 1.21815 0.94887 1.02269 1.00412 1.20571 0.93906 0.93282 0.85825 0.95101 1.21676 0.94613 0.97206 0.83992 0.89369 1.46126 1.70817 1.12120 1.08408 1.20661 0.77174 0.88302 0.84388 1.90704 1.49418 1.15181 1.85586 1.19895 1.03757 0.96608 0.89823 1.18952 0.92571 1.09186 1.02013 1.23768 0.99518 0.95230 0.93964 1.77245 0.90279 1.23861 1.20494 1.48468 1.05817 1.36605 1.24584 1.20633 0.95960 0.94339 0.91475 1.20464 0.88409 1.02261 0.98845 1.21663 1.01219 0.96056 0.97316 1.21971 0.94068 0.98335 1.03267 1.21734 0.88987 0.99009 0.88866 1.21754 0.95889 0.99823 0.98072 1.21993 0.99409 1.00101 0.95722 1.21399 0.85072 0.97106 0.96603 1.44348 1.02093 1.65867 1.19898 1.18913 0.95843 1.38367 0.85650 0.89074 1.25296 0.97616 0.98708 0.95777 1.69822 1.41358 1.39316 1.04647 0.86948 0.83411 0.81394 0.76871 1.21647 1.23281 1.19600 0.93981 0.91580 0.92285 0.77138 0.88899 0.88282 0.80238 0.89205 0.89111 0.91259 0.90226 0.89114 0.90392 0.90139 0.89176 0.92726 0.92709 0.92650 0.91563 0.90833 0.95693 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.84 37.16 0.29 -2.15 16 2 C 0.17 3.20 3.03 -67.60 -0.20 3.00 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.13 2.20 1.99 -67.81 -0.14 2.07 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.72 -9.35 4.57 -53.69 -0.25 -9.60 16 7 C 0.51 6.94 7.79 -10.98 -0.09 6.85 16 8 O -0.53 -9.76 15.70 5.56 0.09 -9.68 16 9 C -0.06 -0.58 5.98 -29.03 -0.17 -0.75 16 10 C -0.22 -2.59 4.59 -105.17 -0.48 -3.07 16 11 C 0.06 0.78 11.97 -17.21 -0.21 0.57 16 12 N -0.30 -4.15 12.62 30.70 0.39 -3.77 16 13 N -0.37 -4.41 4.04 -56.94 -0.23 -4.64 16 14 C 0.10 1.18 6.59 -82.22 -0.54 0.64 16 15 C -0.06 -0.51 6.02 -27.57 -0.17 -0.67 16 16 C -0.12 -0.74 5.97 -26.43 -0.16 -0.90 16 17 C -0.14 -0.83 5.93 -26.52 -0.16 -0.99 16 18 C 0.14 1.07 7.28 -3.86 -0.03 1.04 16 19 C -0.12 -1.90 5.46 -26.70 -0.15 -2.05 16 20 C -0.13 -2.41 6.08 -26.62 -0.16 -2.57 16 21 C 0.12 2.66 4.20 -3.72 -0.02 2.65 16 22 N -0.60 -13.79 2.75 -164.78 -0.45 -14.24 16 23 C -0.26 -7.04 9.06 -15.06 -0.14 -7.18 16 24 H 0.09 2.62 6.40 -52.49 -0.34 2.29 16 25 C 0.02 0.71 5.24 -17.43 -0.09 0.62 16 26 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 27 Si 0.88 22.14 24.34 -169.99 -4.14 18.00 16 28 H -0.29 -7.03 6.63 56.52 0.37 -6.66 16 29 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 30 H -0.27 -6.62 6.63 56.52 0.37 -6.24 16 31 H 0.04 0.60 7.78 -51.93 -0.40 0.19 16 32 H 0.07 1.27 7.67 -51.93 -0.40 0.87 16 33 H 0.06 1.17 7.41 -51.93 -0.38 0.78 16 34 H 0.40 3.92 8.60 -40.82 -0.35 3.57 16 35 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.09 0.59 7.94 -51.93 -0.41 0.18 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.58 8.12 -51.92 -0.42 0.16 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 50 H 0.07 1.75 4.62 -51.93 -0.24 1.51 16 51 H 0.03 0.53 7.03 -51.93 -0.37 0.16 16 52 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -35.47 398.44 -9.21 -44.68 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.80 Total: 3.00 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.60 Total: -2.89 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.23 Total: -59.11 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.47 -9.21 -44.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993475915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.043 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds