Wall clock time and date at job start Wed Apr 1 2020 04:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58587 * 2 1 4 4 C 1.53197 * 109.58822 * 120.28641 * 2 1 3 5 5 H 1.09001 * 109.49284 * 54.60898 * 4 2 1 6 6 N 1.46498 * 109.52009 * 294.53393 * 4 2 1 7 7 C 1.34782 * 119.99923 * 155.14624 * 6 4 2 8 8 O 1.21279 * 119.99733 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99824 * 179.97438 * 7 6 4 10 10 C 1.50705 * 109.46942 * 179.97438 * 9 7 6 11 11 C 1.40061 * 126.10077 * 265.02266 * 10 9 7 12 12 N 1.31023 * 108.25012 * 179.97438 * 11 10 9 13 13 N 1.39647 * 108.13369 * 359.96668 * 12 11 10 14 14 C 1.34747 * 126.09893 * 84.71634 * 10 9 7 15 15 C 1.50870 * 127.76511 * 0.66968 * 14 10 9 16 16 C 1.53439 * 108.23382 * 163.85922 * 15 14 10 17 17 C 1.53145 * 109.19166 * 48.34971 * 16 15 14 18 18 C 1.46589 * 127.55108 * 180.10622 * 13 12 11 19 19 C 1.53032 * 109.31405 * 174.56208 * 4 2 1 20 20 C 1.53037 * 109.53258 * 298.64150 * 19 4 2 21 21 C 1.53172 * 109.32608 * 61.37098 * 20 19 4 22 22 N 1.46932 * 109.70163 * 239.64286 * 2 1 3 23 23 C 1.36935 * 120.63225 * 6.51672 * 22 2 1 24 24 H 1.07999 * 119.99775 * 330.91275 * 23 22 2 25 25 C 1.38807 * 120.00040 * 150.91462 * 23 22 2 26 26 N 1.31621 * 119.99951 * 160.74391 * 25 23 22 27 27 Si 1.86799 * 119.99985 * 340.74551 * 25 23 22 28 28 H 1.48502 * 109.47406 * 92.29490 * 27 25 23 29 29 H 1.48504 * 109.47139 * 212.29631 * 27 25 23 30 30 H 1.48494 * 109.47265 * 332.29359 * 27 25 23 31 31 H 1.08993 * 109.47437 * 299.71262 * 1 2 3 32 32 H 1.09001 * 109.47496 * 59.71726 * 1 2 3 33 33 H 1.09006 * 109.47345 * 179.71561 * 1 2 3 34 34 H 0.96998 * 120.00358 * 335.14159 * 6 4 2 35 35 H 1.09000 * 109.47182 * 299.99821 * 9 7 6 36 36 H 1.08998 * 109.47391 * 59.99792 * 9 7 6 37 37 H 1.08002 * 125.86880 * 359.95754 * 11 10 9 38 38 H 1.09001 * 109.85417 * 44.07545 * 15 14 10 39 39 H 1.09005 * 109.56912 * 283.47627 * 15 14 10 40 40 H 1.08999 * 109.51496 * 288.44031 * 16 15 14 41 41 H 1.09001 * 109.56402 * 168.29819 * 16 15 14 42 42 H 1.09003 * 109.45776 * 170.53691 * 17 16 15 43 43 H 1.09008 * 109.45460 * 50.59267 * 17 16 15 44 44 H 1.08998 * 109.58386 * 282.44990 * 18 13 12 45 45 H 1.08994 * 109.58086 * 42.86159 * 18 13 12 46 46 H 1.09002 * 109.46020 * 58.65640 * 19 4 2 47 47 H 1.08996 * 109.46310 * 178.62544 * 19 4 2 48 48 H 1.08997 * 109.50190 * 181.30774 * 20 19 4 49 49 H 1.08999 * 109.49839 * 301.41163 * 20 19 4 50 50 H 1.09000 * 109.59035 * 185.57760 * 21 20 19 51 51 H 1.08997 * 109.59091 * 65.14319 * 21 20 19 52 52 H 0.97000 * 119.99778 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.6049 -1.7247 1.2921 6 7 1.6675 0.0273 2.4440 7 6 1.5472 -0.6042 3.6287 8 8 1.7498 -1.7977 3.7029 9 6 1.1609 0.1727 4.8608 10 6 1.0953 -0.7600 6.0427 11 6 -0.0544 -1.3934 6.5313 12 7 0.2867 -2.1222 7.5654 13 7 1.6610 -1.9760 7.7658 14 6 2.1333 -1.1379 6.8144 15 6 3.5768 -0.7165 6.6925 16 6 4.2923 -1.0692 8.0032 17 6 3.9567 -2.5133 8.3872 18 6 2.4844 -2.6042 8.8032 19 6 3.5678 -0.8435 1.1729 20 6 3.9601 -1.6608 -0.0601 21 6 3.4685 -0.9436 -1.3211 22 7 2.0253 -0.6991 -1.1936 23 6 1.1584 -1.1151 -2.1686 24 1 0.1413 -1.3729 -1.9126 25 6 1.5869 -1.2056 -3.4858 26 7 0.9166 -1.9417 -4.3467 27 14 3.1148 -0.2828 -4.0364 28 1 4.3016 -1.1652 -3.9018 29 1 2.9610 0.1270 -5.4555 30 1 3.2964 0.9236 -3.1898 31 1 -0.3634 0.5093 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3634 -1.0277 -0.0051 34 1 1.5052 0.9817 2.3846 35 1 1.9040 0.9474 5.0497 36 1 0.1854 0.6345 4.7082 37 1 -1.0507 -1.2973 6.1256 38 1 3.6354 0.3580 6.5190 39 1 4.0438 -1.2489 5.8638 40 1 3.9588 -0.3957 8.7927 41 1 5.3694 -0.9688 7.8696 42 1 4.5887 -2.8241 9.2191 43 1 4.1341 -3.1667 7.5329 44 1 2.3389 -2.0840 9.7499 45 1 2.1997 -3.6507 8.9116 46 1 4.0045 0.1527 1.1022 47 1 3.9380 -1.3394 2.0701 48 1 5.0446 -1.7625 -0.0992 49 1 3.5034 -2.6488 -0.0021 50 1 3.6575 -1.5684 -2.1940 51 1 3.9920 0.0064 -1.4288 52 1 1.2162 -2.0052 -5.2671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993475915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:06 Heat of formation + Delta-G solvation = 27.917660 kcal Electronic energy + Delta-G solvation = -31427.896131 eV Core-core repulsion = 27427.978614 eV Total energy + Delta-G solvation = -3999.917517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.52493 -40.89930 -39.28866 -37.38756 -35.84842 -34.43731 -34.22705 -33.46899 -31.98277 -31.23611 -30.81779 -28.13181 -27.14888 -26.61272 -25.12716 -24.19016 -23.12038 -22.37412 -21.85732 -21.30101 -20.82397 -19.65742 -18.42349 -17.93628 -17.57247 -17.25451 -16.70662 -16.50618 -16.18150 -16.07561 -15.44977 -15.34336 -15.26428 -15.12579 -14.94891 -14.92598 -14.64931 -14.52162 -14.22218 -13.87812 -13.64226 -13.51090 -13.44964 -12.96241 -12.88454 -12.84977 -12.64819 -12.52668 -12.43625 -12.01042 -11.97028 -11.91244 -11.85132 -11.83231 -11.63315 -11.43140 -11.42689 -11.27069 -10.83712 -10.61076 -10.11273 -9.89942 -9.23602 -8.87201 -8.11152 -5.45786 0.96202 1.33861 1.43808 1.53406 1.63799 1.75382 1.87325 2.45673 2.46894 3.10674 3.36651 3.45997 3.67895 3.79895 3.83101 3.88562 3.96694 4.02420 4.09543 4.16793 4.25796 4.31549 4.33356 4.41217 4.44153 4.51564 4.54500 4.59635 4.68459 4.73222 4.77154 4.82081 4.89172 4.91000 4.94231 4.94855 5.03750 5.04589 5.06468 5.09828 5.20224 5.26727 5.27772 5.30167 5.41434 5.50166 5.69437 5.75061 5.92919 6.18021 6.21369 6.79694 6.80806 6.94907 7.51467 7.66816 8.05425 9.08328 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.002445 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.456527 B =11449.656794 C =12062.078350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.168 3.832 3 H 0.060 0.940 4 C 0.145 3.855 5 H 0.045 0.955 6 N -0.709 5.709 7 C 0.511 3.489 8 O -0.585 6.585 9 C -0.048 4.048 10 C -0.236 4.236 11 C 0.045 3.955 12 N -0.339 5.339 13 N -0.379 5.379 14 C 0.097 3.903 15 C -0.062 4.062 16 C -0.121 4.121 17 C -0.133 4.133 18 C 0.123 3.877 19 C -0.108 4.108 20 C -0.127 4.127 21 C 0.117 3.883 22 N -0.614 5.614 23 C -0.240 4.240 24 H 0.059 0.941 25 C -0.039 4.039 26 N -0.962 5.962 27 Si 0.948 3.052 28 H -0.279 1.279 29 H -0.316 1.316 30 H -0.252 1.252 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.026 0.974 34 H 0.416 0.584 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.193 0.807 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.084 0.916 49 H 0.040 0.960 50 H 0.047 0.953 51 H 0.044 0.956 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 9.514 28.794 31.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.077 0.923 4 C 0.038 3.962 5 H 0.063 0.937 6 N -0.362 5.362 7 C 0.299 3.701 8 O -0.464 6.464 9 C -0.088 4.088 10 C -0.248 4.248 11 C -0.141 4.141 12 N -0.160 5.160 13 N -0.162 5.162 14 C -0.032 4.032 15 C -0.100 4.100 16 C -0.158 4.158 17 C -0.171 4.171 18 C 0.003 3.997 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.007 4.007 22 N -0.339 5.339 23 C -0.370 4.370 24 H 0.077 0.923 25 C -0.233 4.233 26 N -0.608 5.608 27 Si 0.777 3.223 28 H -0.206 1.206 29 H -0.245 1.245 30 H -0.176 1.176 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.253 0.747 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.210 0.790 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.138 0.862 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.699 7.743 29.770 31.967 hybrid contribution 0.149 0.282 -1.856 1.883 sum 8.848 8.025 27.914 30.363 Atomic orbital electron populations 1.21741 0.94793 1.00539 1.01572 1.20806 0.94115 0.94212 0.84686 0.92253 1.21180 0.94973 0.95315 0.84725 0.93683 1.45885 1.70413 1.12860 1.06996 1.21371 0.75718 0.87804 0.85228 1.90699 1.51660 1.17748 1.86319 1.19938 1.06157 0.96156 0.86588 1.19305 0.92416 1.10088 1.02962 1.24161 1.00712 0.95196 0.93985 1.77153 0.91993 1.25156 1.21715 1.48830 1.05395 1.36649 1.25322 1.21246 0.97412 0.93597 0.90901 1.20601 0.86443 1.03327 0.99658 1.21681 1.02127 0.95735 0.96265 1.21990 0.93001 0.98480 1.03633 1.22081 0.89768 0.98874 0.88940 1.21684 0.95144 1.00826 0.96999 1.21909 1.00946 0.98682 0.95115 1.21475 0.84268 0.97753 0.97212 1.44501 1.02446 1.66706 1.20252 1.18829 0.95207 1.36316 0.86638 0.92344 1.25949 1.01275 0.99999 0.96050 1.69971 1.44131 1.41803 1.04932 0.85893 0.80108 0.80575 0.75755 1.20565 1.24484 1.17642 0.89789 0.93380 0.95458 0.74722 0.85412 0.85663 0.78984 0.87017 0.90510 0.90329 0.88237 0.86176 0.92240 0.88435 0.89606 0.90060 0.92378 0.89725 0.94107 0.93469 0.93824 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.84 71.98 0.56 -3.97 16 2 C 0.17 5.94 3.03 44.97 0.14 6.08 16 3 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.15 4.63 1.99 45.07 0.09 4.72 16 5 H 0.04 1.86 7.58 -2.39 -0.02 1.84 16 6 N -0.71 -16.04 4.57 -442.17 -2.02 -18.06 16 7 C 0.51 12.73 7.79 87.65 0.68 13.41 16 8 O -0.58 -21.19 15.70 -3.03 -0.05 -21.24 16 9 C -0.05 -0.77 5.98 29.10 0.17 -0.59 16 10 C -0.24 -5.29 4.59 -20.22 -0.09 -5.38 16 11 C 0.04 1.12 11.97 85.26 1.02 2.14 16 12 N -0.34 -9.53 12.62 -56.80 -0.72 -10.24 16 13 N -0.38 -8.76 4.04 -334.07 -1.35 -10.11 16 14 C 0.10 2.06 6.59 41.28 0.27 2.33 16 15 C -0.06 -0.86 6.02 30.05 0.18 -0.68 16 16 C -0.12 -1.05 5.97 30.79 0.18 -0.86 16 17 C -0.13 -1.33 5.93 30.73 0.18 -1.15 16 18 C 0.12 1.83 7.28 86.45 0.63 2.46 16 19 C -0.11 -3.20 5.46 30.62 0.17 -3.03 16 20 C -0.13 -4.38 6.08 30.66 0.19 -4.20 16 21 C 0.12 4.85 4.20 86.35 0.36 5.22 16 22 N -0.61 -27.96 2.75 -675.25 -1.86 -29.82 16 23 C -0.24 -13.39 9.06 84.03 0.76 -12.63 16 24 H 0.06 3.57 6.40 -2.91 -0.02 3.55 16 25 C -0.04 -2.25 5.24 84.86 0.44 -1.81 16 26 N -0.96 -60.99 13.97 21.65 0.30 -60.69 16 27 Si 0.95 46.04 24.34 68.60 1.67 47.71 16 28 H -0.28 -12.94 6.63 99.48 0.66 -12.28 16 29 H -0.32 -15.77 7.11 99.48 0.71 -15.06 16 30 H -0.25 -11.35 6.63 99.48 0.66 -10.69 16 31 H 0.08 2.19 7.78 -2.39 -0.02 2.17 16 32 H 0.05 1.84 7.67 -2.39 -0.02 1.83 16 33 H 0.03 1.10 7.41 -2.38 -0.02 1.08 16 34 H 0.42 6.20 8.60 -92.71 -0.80 5.41 16 35 H 0.13 1.19 7.89 -2.39 -0.02 1.17 16 36 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.19 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.11 1.03 7.94 -2.39 -0.02 1.01 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 41 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.83 8.12 -2.38 -0.02 0.81 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.05 2.20 4.62 -2.39 -0.01 2.19 16 51 H 0.04 1.67 7.03 -2.39 -0.02 1.65 16 52 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -82.81 398.44 1.95 -80.86 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.02 Total: 19.53 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.94 Total: 2.06 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -5.64 Total: -128.92 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.67 Total: 47.71 kcal Total: -82.81 1.95 -80.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993475915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.776 kcal (2) G-P(sol) polarization free energy of solvation -82.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds