Wall clock time and date at job start Wed Apr 1 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58977 * 2 1 4 4 C 1.53188 * 109.58915 * 239.71379 * 2 1 3 5 5 H 1.08998 * 109.49887 * 65.45099 * 4 2 1 6 6 N 1.46508 * 109.49901 * 305.38892 * 4 2 1 7 7 C 1.34773 * 120.00397 * 154.99595 * 6 4 2 8 8 O 1.21286 * 119.99615 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00067 * 179.97438 * 7 6 4 10 10 C 1.50701 * 109.47003 * 180.02562 * 9 7 6 11 11 C 1.40066 * 126.09755 * 265.02776 * 10 9 7 12 12 N 1.31024 * 108.25013 * 179.71656 * 11 10 9 13 13 N 1.39647 * 108.13016 * 0.36112 * 12 11 10 14 14 C 1.34749 * 126.10232 * 84.99772 * 10 9 7 15 15 C 1.50867 * 127.76682 * 0.11230 * 14 10 9 16 16 C 1.53440 * 108.17874 * 164.18137 * 15 14 10 17 17 C 1.53151 * 109.18991 * 48.55848 * 16 15 14 18 18 C 1.46591 * 127.54866 * 179.97438 * 13 12 11 19 19 C 1.53042 * 109.31759 * 185.43637 * 4 2 1 20 20 C 1.53040 * 109.53431 * 61.36304 * 19 4 2 21 21 C 1.53188 * 109.31372 * 298.63702 * 20 19 4 22 22 N 1.46923 * 108.77678 * 54.63731 * 21 20 19 23 23 C 1.36936 * 120.62921 * 126.41101 * 22 21 20 24 24 H 1.08013 * 120.00145 * 208.63243 * 23 22 21 25 25 C 1.38815 * 120.00354 * 28.63456 * 23 22 21 26 26 N 1.31618 * 119.99803 * 14.71654 * 25 23 22 27 27 Si 1.86800 * 119.99992 * 194.71599 * 25 23 22 28 28 H 1.48495 * 109.47323 * 90.00171 * 27 25 23 29 29 H 1.48503 * 109.46737 * 209.99858 * 27 25 23 30 30 H 1.48499 * 109.47062 * 329.99554 * 27 25 23 31 31 H 1.08999 * 109.47318 * 180.28214 * 1 2 3 32 32 H 1.08996 * 109.46840 * 300.28703 * 1 2 3 33 33 H 1.09002 * 109.47220 * 60.28559 * 1 2 3 34 34 H 0.96998 * 119.99365 * 334.99783 * 6 4 2 35 35 H 1.08997 * 109.47103 * 60.00536 * 9 7 6 36 36 H 1.09000 * 109.46970 * 300.00083 * 9 7 6 37 37 H 1.08000 * 125.87122 * 359.96576 * 11 10 9 38 38 H 1.09004 * 109.72055 * 44.51216 * 15 14 10 39 39 H 1.08998 * 109.75733 * 283.87486 * 15 14 10 40 40 H 1.09005 * 109.51401 * 288.64656 * 16 15 14 41 41 H 1.08991 * 109.56465 * 168.50337 * 16 15 14 42 42 H 1.08996 * 109.45516 * 170.54038 * 17 16 15 43 43 H 1.08999 * 109.45768 * 50.59252 * 17 16 15 44 44 H 1.08997 * 109.58302 * 282.20251 * 18 13 12 45 45 H 1.08998 * 109.58491 * 42.47836 * 18 13 12 46 46 H 1.08994 * 109.46450 * 181.38191 * 19 4 2 47 47 H 1.08995 * 109.45539 * 301.34796 * 19 4 2 48 48 H 1.09005 * 109.49736 * 178.68622 * 20 19 4 49 49 H 1.08996 * 109.50000 * 58.59458 * 20 19 4 50 50 H 1.08995 * 109.58823 * 294.84451 * 21 20 19 51 51 H 1.09008 * 109.70650 * 174.49597 * 21 20 19 52 52 H 0.96995 * 120.00021 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 1 1.7634 -0.1659 -2.1371 6 7 1.4540 -2.0677 -1.3078 7 6 1.3309 -2.6959 -2.4938 8 8 1.7085 -2.1522 -3.5101 9 6 0.7250 -4.0743 -2.5570 10 6 0.7035 -4.5484 -3.9873 11 6 -0.3720 -4.4367 -4.8776 12 7 -0.0103 -4.9554 -6.0252 13 7 1.3006 -5.4196 -5.8983 14 6 1.7156 -5.1550 -4.6380 15 6 3.0832 -5.5001 -4.1025 16 6 3.7289 -6.5138 -5.0564 17 6 3.5896 -6.0100 -6.4959 18 6 2.1195 -6.0746 -6.9226 19 6 3.5679 -0.8434 -1.1728 20 6 3.9603 -1.6608 0.0600 21 6 3.4685 -0.9435 1.3211 22 7 2.0254 -0.6990 1.1936 23 6 1.1586 -1.1143 2.1690 24 1 0.1392 -1.3649 1.9146 25 6 1.5899 -1.2132 3.4847 26 7 2.7188 -0.6448 3.8517 27 14 0.5680 -2.1531 4.7344 28 1 0.9911 -3.5764 4.7499 29 1 0.7683 -1.5625 6.0822 30 1 -0.8677 -2.0673 4.3648 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3634 0.5094 -0.8925 34 1 1.1523 -2.5025 -0.4950 35 1 -0.2932 -4.0417 -2.1694 36 1 1.3209 -4.7610 -1.9558 37 1 -1.3326 -3.9950 -4.6574 38 1 2.9893 -5.9382 -3.1088 39 1 3.6966 -4.6006 -4.0514 40 1 3.2282 -7.4769 -4.9575 41 1 4.7848 -6.6253 -4.8101 42 1 4.1881 -6.6349 -7.1587 43 1 3.9392 -4.9793 -6.5553 44 1 1.8143 -7.1161 -7.0234 45 1 1.9907 -5.5623 -7.8761 46 1 3.9381 -1.3392 -2.0701 47 1 4.0045 0.1527 -1.1021 48 1 5.0449 -1.7626 0.0990 49 1 3.5037 -2.6489 0.0019 50 1 3.9920 0.0064 1.4288 51 1 3.6578 -1.5662 2.1956 52 1 3.0204 -0.7142 4.7709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993475924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:18 Heat of formation + Delta-G solvation = 47.781129 kcal Electronic energy + Delta-G solvation = -31949.201998 eV Core-core repulsion = 27950.145825 eV Total energy + Delta-G solvation = -3999.056173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.60224 -39.52660 -37.53318 -36.65875 -33.87030 -33.34538 -32.37351 -31.69552 -30.55369 -30.32599 -29.20502 -26.63776 -25.85964 -24.98792 -24.39706 -22.44504 -22.06022 -20.98868 -20.69554 -19.93122 -18.84080 -18.64427 -16.80545 -16.54842 -16.30806 -15.78203 -15.26278 -15.12757 -14.80938 -14.65380 -14.49422 -14.27928 -14.02423 -13.85700 -13.59658 -13.44037 -13.13798 -12.97951 -12.77632 -12.62917 -12.51499 -12.10022 -11.87274 -11.74752 -11.37155 -11.28610 -11.24361 -11.22145 -11.15798 -10.96983 -10.71285 -10.59996 -10.50472 -10.49714 -10.09710 -10.00486 -9.63427 -9.39275 -9.29794 -9.16295 -8.52599 -8.36545 -8.24950 -6.68873 -5.81628 -3.26890 1.90432 2.45288 2.79369 3.14063 3.33731 3.41000 3.42343 3.89260 4.14775 4.33159 4.42763 4.44222 4.52125 4.84832 4.92815 5.07978 5.15716 5.24083 5.27581 5.31450 5.32611 5.34983 5.43835 5.50736 5.56965 5.59809 5.63673 5.68559 5.75917 5.78335 5.85761 5.94727 5.98975 6.14737 6.21660 6.24649 6.36921 6.44681 6.54945 6.68820 6.69385 6.71767 6.80514 6.95713 6.99499 7.02261 7.19475 7.39045 7.67908 7.76731 7.77078 8.16351 8.41317 8.79342 9.17634 9.80719 10.37550 11.26013 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002786 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.072228 B =10047.811918 C =10157.935150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.037 0.963 4 C 0.136 3.864 5 H 0.073 0.927 6 N -0.704 5.704 7 C 0.508 3.492 8 O -0.549 6.549 9 C -0.062 4.062 10 C -0.210 4.210 11 C 0.060 3.940 12 N -0.301 5.301 13 N -0.373 5.373 14 C 0.102 3.898 15 C -0.061 4.061 16 C -0.125 4.125 17 C -0.137 4.137 18 C 0.136 3.864 19 C -0.120 4.120 20 C -0.139 4.139 21 C 0.170 3.830 22 N -0.586 5.586 23 C -0.253 4.253 24 H 0.071 0.929 25 C 0.004 3.996 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.293 1.293 30 H -0.279 1.279 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.407 0.593 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.180 0.820 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.016 0.984 51 H 0.089 0.911 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -11.107 -16.226 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.091 0.909 6 N -0.356 5.356 7 C 0.294 3.706 8 O -0.427 6.427 9 C -0.103 4.103 10 C -0.222 4.222 11 C -0.126 4.126 12 N -0.121 5.121 13 N -0.156 5.156 14 C -0.025 4.025 15 C -0.100 4.100 16 C -0.163 4.163 17 C -0.176 4.176 18 C 0.015 3.985 19 C -0.158 4.158 20 C -0.178 4.178 21 C 0.045 3.955 22 N -0.310 5.310 23 C -0.383 4.383 24 H 0.089 0.911 25 C -0.195 4.195 26 N -0.546 5.546 27 Si 0.731 3.269 28 H -0.215 1.215 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.243 0.757 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.197 0.803 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.034 0.966 51 H 0.107 0.893 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.155 -11.024 -18.104 21.228 hybrid contribution -0.346 -0.326 1.930 1.988 sum 0.809 -11.351 -16.174 19.776 Atomic orbital electron populations 1.21773 0.95662 1.01487 1.00337 1.20711 0.93317 0.93861 0.86895 0.94569 1.21460 0.92752 0.83406 0.99470 0.90888 1.46023 1.62038 1.18416 1.09092 1.20604 0.78943 0.87520 0.83551 1.90649 1.50088 1.67408 1.34551 1.19897 1.02891 0.94277 0.93243 1.18980 0.94636 1.11224 0.97321 1.23749 0.99690 0.98873 0.90269 1.77215 0.93102 1.19321 1.22494 1.48438 1.10674 1.47191 1.09298 1.20635 0.96429 0.99432 0.85979 1.20461 0.90165 1.00137 0.99195 1.21665 1.01882 0.98765 0.93944 1.21952 0.94299 1.03500 0.97812 1.21702 0.89125 0.97428 0.90271 1.21755 0.95739 1.00259 0.98095 1.22126 0.98737 0.99588 0.97333 1.20826 0.83089 0.97204 0.94427 1.44164 1.03086 1.64893 1.18820 1.19190 0.94731 1.37984 0.86388 0.91089 1.25089 0.97717 0.99705 0.96960 1.70012 1.22890 1.44679 1.17009 0.86322 0.79863 0.79704 0.81034 1.21497 1.21902 1.20448 0.92689 0.91926 0.94243 0.75670 0.88416 0.88856 0.80334 0.89113 0.89088 0.91276 0.90233 0.89199 0.90470 0.90254 0.89287 0.93308 0.92210 0.93660 0.92818 0.96610 0.89280 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.72 37.16 0.29 -2.12 16 2 C 0.16 3.10 3.19 -67.60 -0.22 2.88 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.14 2.38 2.32 -67.81 -0.16 2.22 16 5 H 0.07 1.33 7.58 -51.93 -0.39 0.93 16 6 N -0.70 -11.28 3.47 -53.69 -0.19 -11.46 16 7 C 0.51 7.97 7.79 -10.99 -0.09 7.89 16 8 O -0.55 -10.51 15.70 5.55 0.09 -10.42 16 9 C -0.06 -0.77 5.99 -29.03 -0.17 -0.94 16 10 C -0.21 -2.86 4.59 -105.17 -0.48 -3.34 16 11 C 0.06 0.83 11.97 -17.21 -0.21 0.62 16 12 N -0.30 -4.44 12.62 30.70 0.39 -4.05 16 13 N -0.37 -4.79 4.04 -56.97 -0.23 -5.02 16 14 C 0.10 1.31 6.59 -82.22 -0.54 0.77 16 15 C -0.06 -0.61 6.02 -27.57 -0.17 -0.77 16 16 C -0.12 -0.90 5.97 -26.42 -0.16 -1.06 16 17 C -0.14 -0.95 5.93 -26.54 -0.16 -1.10 16 18 C 0.14 1.19 7.28 -3.88 -0.03 1.16 16 19 C -0.12 -2.10 5.58 -26.69 -0.15 -2.24 16 20 C -0.14 -2.55 5.93 -26.61 -0.16 -2.71 16 21 C 0.17 3.80 5.29 -3.71 -0.02 3.78 16 22 N -0.59 -13.17 2.65 -164.78 -0.44 -13.60 16 23 C -0.25 -6.22 8.63 -15.06 -0.13 -6.35 16 24 H 0.07 1.68 6.20 -52.48 -0.33 1.36 16 25 C 0.00 0.11 4.97 -17.43 -0.09 0.02 16 26 N -0.90 -24.84 11.09 55.49 0.62 -24.23 16 27 Si 0.90 20.48 29.58 -169.99 -5.03 15.45 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 31 H 0.05 0.95 6.40 -51.93 -0.33 0.62 16 32 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.41 6.60 7.78 -40.82 -0.32 6.28 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 37 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.09 2.25 6.01 -51.92 -0.31 1.93 16 52 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -31.47 401.49 -10.13 -41.60 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.77 Total: 6.96 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.63 Total: -1.28 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.15 Total: -58.36 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.47 -10.13 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993475924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.384 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds