Wall clock time and date at job start Wed Apr 1 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58977 * 2 1 4 4 C 1.53188 * 109.58915 * 239.71379 * 2 1 3 5 5 H 1.08998 * 109.49887 * 65.45099 * 4 2 1 6 6 N 1.46508 * 109.49901 * 305.38892 * 4 2 1 7 7 C 1.34773 * 120.00397 * 154.99595 * 6 4 2 8 8 O 1.21286 * 119.99615 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00067 * 179.97438 * 7 6 4 10 10 C 1.50701 * 109.47003 * 180.02562 * 9 7 6 11 11 C 1.40066 * 126.09755 * 265.02776 * 10 9 7 12 12 N 1.31024 * 108.25013 * 179.71656 * 11 10 9 13 13 N 1.39647 * 108.13016 * 0.36112 * 12 11 10 14 14 C 1.34749 * 126.10232 * 84.99772 * 10 9 7 15 15 C 1.50867 * 127.76682 * 0.11230 * 14 10 9 16 16 C 1.53440 * 108.17874 * 164.18137 * 15 14 10 17 17 C 1.53151 * 109.18991 * 48.55848 * 16 15 14 18 18 C 1.46591 * 127.54866 * 179.97438 * 13 12 11 19 19 C 1.53042 * 109.31759 * 185.43637 * 4 2 1 20 20 C 1.53040 * 109.53431 * 61.36304 * 19 4 2 21 21 C 1.53188 * 109.31372 * 298.63702 * 20 19 4 22 22 N 1.46923 * 108.77678 * 54.63731 * 21 20 19 23 23 C 1.36936 * 120.62921 * 126.41101 * 22 21 20 24 24 H 1.08013 * 120.00145 * 208.63243 * 23 22 21 25 25 C 1.38815 * 120.00354 * 28.63456 * 23 22 21 26 26 N 1.31618 * 119.99803 * 14.71654 * 25 23 22 27 27 Si 1.86800 * 119.99992 * 194.71599 * 25 23 22 28 28 H 1.48495 * 109.47323 * 90.00171 * 27 25 23 29 29 H 1.48503 * 109.46737 * 209.99858 * 27 25 23 30 30 H 1.48499 * 109.47062 * 329.99554 * 27 25 23 31 31 H 1.08999 * 109.47318 * 180.28214 * 1 2 3 32 32 H 1.08996 * 109.46840 * 300.28703 * 1 2 3 33 33 H 1.09002 * 109.47220 * 60.28559 * 1 2 3 34 34 H 0.96998 * 119.99365 * 334.99783 * 6 4 2 35 35 H 1.08997 * 109.47103 * 60.00536 * 9 7 6 36 36 H 1.09000 * 109.46970 * 300.00083 * 9 7 6 37 37 H 1.08000 * 125.87122 * 359.96576 * 11 10 9 38 38 H 1.09004 * 109.72055 * 44.51216 * 15 14 10 39 39 H 1.08998 * 109.75733 * 283.87486 * 15 14 10 40 40 H 1.09005 * 109.51401 * 288.64656 * 16 15 14 41 41 H 1.08991 * 109.56465 * 168.50337 * 16 15 14 42 42 H 1.08996 * 109.45516 * 170.54038 * 17 16 15 43 43 H 1.08999 * 109.45768 * 50.59252 * 17 16 15 44 44 H 1.08997 * 109.58302 * 282.20251 * 18 13 12 45 45 H 1.08998 * 109.58491 * 42.47836 * 18 13 12 46 46 H 1.08994 * 109.46450 * 181.38191 * 19 4 2 47 47 H 1.08995 * 109.45539 * 301.34796 * 19 4 2 48 48 H 1.09005 * 109.49736 * 178.68622 * 20 19 4 49 49 H 1.08996 * 109.50000 * 58.59458 * 20 19 4 50 50 H 1.08995 * 109.58823 * 294.84451 * 21 20 19 51 51 H 1.09008 * 109.70650 * 174.49597 * 21 20 19 52 52 H 0.96995 * 120.00021 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 1 1.7634 -0.1659 -2.1371 6 7 1.4540 -2.0677 -1.3078 7 6 1.3309 -2.6959 -2.4938 8 8 1.7085 -2.1522 -3.5101 9 6 0.7250 -4.0743 -2.5570 10 6 0.7035 -4.5484 -3.9873 11 6 -0.3720 -4.4367 -4.8776 12 7 -0.0103 -4.9554 -6.0252 13 7 1.3006 -5.4196 -5.8983 14 6 1.7156 -5.1550 -4.6380 15 6 3.0832 -5.5001 -4.1025 16 6 3.7289 -6.5138 -5.0564 17 6 3.5896 -6.0100 -6.4959 18 6 2.1195 -6.0746 -6.9226 19 6 3.5679 -0.8434 -1.1728 20 6 3.9603 -1.6608 0.0600 21 6 3.4685 -0.9435 1.3211 22 7 2.0254 -0.6990 1.1936 23 6 1.1586 -1.1143 2.1690 24 1 0.1392 -1.3649 1.9146 25 6 1.5899 -1.2132 3.4847 26 7 2.7188 -0.6448 3.8517 27 14 0.5680 -2.1531 4.7344 28 1 0.9911 -3.5764 4.7499 29 1 0.7683 -1.5625 6.0822 30 1 -0.8677 -2.0673 4.3648 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3634 0.5094 -0.8925 34 1 1.1523 -2.5025 -0.4950 35 1 -0.2932 -4.0417 -2.1694 36 1 1.3209 -4.7610 -1.9558 37 1 -1.3326 -3.9950 -4.6574 38 1 2.9893 -5.9382 -3.1088 39 1 3.6966 -4.6006 -4.0514 40 1 3.2282 -7.4769 -4.9575 41 1 4.7848 -6.6253 -4.8101 42 1 4.1881 -6.6349 -7.1587 43 1 3.9392 -4.9793 -6.5553 44 1 1.8143 -7.1161 -7.0234 45 1 1.9907 -5.5623 -7.8761 46 1 3.9381 -1.3392 -2.0701 47 1 4.0045 0.1527 -1.1021 48 1 5.0449 -1.7626 0.0990 49 1 3.5037 -2.6489 0.0019 50 1 3.9920 0.0064 1.4288 51 1 3.6578 -1.5662 2.1956 52 1 3.0204 -0.7142 4.7709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993475924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:16 Heat of formation + Delta-G solvation = 30.219851 kcal Electronic energy + Delta-G solvation = -31949.963512 eV Core-core repulsion = 27950.145825 eV Total energy + Delta-G solvation = -3999.817687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.51966 -40.91139 -39.02308 -37.38057 -35.51106 -34.30177 -33.90650 -33.31852 -31.65841 -31.19987 -30.61536 -27.99325 -27.11697 -26.70761 -25.11767 -23.79089 -23.11552 -22.36967 -22.08374 -21.01505 -20.18463 -19.65979 -18.21757 -18.01972 -17.36246 -16.99451 -16.58862 -16.31143 -16.25784 -15.65489 -15.47208 -15.36918 -15.15545 -15.05666 -14.81215 -14.70504 -14.56642 -14.32790 -14.16831 -13.83710 -13.49961 -13.47313 -12.96544 -12.88002 -12.82069 -12.68314 -12.60330 -12.41129 -12.27453 -12.12094 -11.97021 -11.91025 -11.86196 -11.85216 -11.61680 -11.43652 -11.29976 -10.98946 -10.69698 -10.44602 -10.09840 -9.76657 -9.22393 -8.57100 -7.76399 -5.22935 0.95947 1.53979 1.56148 1.62958 1.64035 1.78218 1.91320 2.57686 2.64905 3.39747 3.46619 3.64141 3.68112 3.79963 3.83043 3.99485 4.05138 4.13521 4.19544 4.26427 4.32375 4.35367 4.41457 4.45122 4.52213 4.58843 4.62539 4.71255 4.73490 4.81906 4.84988 4.89346 4.94706 4.99446 5.03071 5.04768 5.09043 5.10896 5.19185 5.26395 5.28787 5.30984 5.39774 5.50580 5.62113 5.75075 5.77331 5.80429 5.87865 6.17569 6.49185 6.80254 6.88183 7.24547 7.53389 7.94754 8.47740 9.29982 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002786 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.072228 B =10047.811918 C =10157.935150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.024 0.976 4 C 0.146 3.854 5 H 0.071 0.929 6 N -0.700 5.700 7 C 0.513 3.487 8 O -0.584 6.584 9 C -0.053 4.053 10 C -0.232 4.232 11 C 0.047 3.953 12 N -0.334 5.334 13 N -0.377 5.377 14 C 0.096 3.904 15 C -0.062 4.062 16 C -0.121 4.121 17 C -0.131 4.131 18 C 0.124 3.876 19 C -0.113 4.113 20 C -0.123 4.123 21 C 0.178 3.822 22 N -0.595 5.595 23 C -0.243 4.243 24 H 0.083 0.917 25 C -0.052 4.052 26 N -0.939 5.939 27 Si 0.960 3.040 28 H -0.286 1.286 29 H -0.307 1.307 30 H -0.267 1.267 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.195 0.805 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.058 0.942 50 H -0.011 1.011 51 H 0.059 0.941 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -13.077 -17.414 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.041 0.959 4 C 0.039 3.961 5 H 0.089 0.911 6 N -0.351 5.351 7 C 0.300 3.700 8 O -0.464 6.464 9 C -0.094 4.094 10 C -0.244 4.244 11 C -0.138 4.138 12 N -0.155 5.155 13 N -0.160 5.160 14 C -0.032 4.032 15 C -0.101 4.101 16 C -0.158 4.158 17 C -0.169 4.169 18 C 0.004 3.996 19 C -0.152 4.152 20 C -0.162 4.162 21 C 0.052 3.948 22 N -0.319 5.319 23 C -0.373 4.373 24 H 0.101 0.899 25 C -0.247 4.247 26 N -0.586 5.586 27 Si 0.790 3.210 28 H -0.213 1.213 29 H -0.235 1.235 30 H -0.191 1.191 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.212 0.788 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.007 0.993 51 H 0.078 0.922 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.803 -13.012 -19.327 23.313 hybrid contribution -0.233 0.339 2.205 2.243 sum 0.570 -12.674 -17.121 21.309 Atomic orbital electron populations 1.21692 0.94182 1.01985 1.00594 1.20816 0.94536 0.93165 0.86422 0.95882 1.21190 0.92740 0.84172 0.97990 0.91090 1.45962 1.61963 1.17743 1.09448 1.21128 0.77961 0.88329 0.82533 1.90640 1.51606 1.68506 1.35645 1.19894 1.04098 0.92173 0.93209 1.19227 0.94998 1.12131 0.97994 1.24127 1.00639 0.98790 0.90215 1.77135 0.94580 1.20514 1.23302 1.48809 1.10317 1.46817 1.10087 1.21147 0.97371 0.98669 0.86035 1.20565 0.88628 1.00408 1.00506 1.21679 1.02798 0.98088 0.93249 1.21968 0.93226 1.03283 0.98445 1.22080 0.89842 0.98042 0.89636 1.21692 0.95760 1.00132 0.97625 1.21923 0.99557 0.99218 0.95481 1.20611 0.83226 0.95697 0.95270 1.44342 1.02927 1.65337 1.19286 1.19543 0.95217 1.35983 0.86558 0.89947 1.25766 0.98853 1.01219 0.98821 1.70178 1.24781 1.46880 1.16731 0.85369 0.79149 0.78312 0.78212 1.21268 1.23480 1.19142 0.91973 0.93582 0.92097 0.75476 0.86321 0.86920 0.78789 0.87986 0.90474 0.90494 0.88372 0.86033 0.92002 0.88572 0.89148 0.92757 0.92253 0.92216 0.92308 0.99294 0.92235 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.72 71.98 0.56 -3.76 16 2 C 0.16 5.98 3.19 44.97 0.14 6.12 16 3 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.15 4.92 2.32 45.07 0.10 5.03 16 5 H 0.07 2.48 7.58 -2.39 -0.02 2.46 16 6 N -0.70 -21.03 3.47 -442.15 -1.53 -22.56 16 7 C 0.51 15.11 7.79 87.66 0.68 15.80 16 8 O -0.58 -21.64 15.70 -3.05 -0.05 -21.69 16 9 C -0.05 -1.19 5.99 29.10 0.17 -1.02 16 10 C -0.23 -5.98 4.59 -20.22 -0.09 -6.07 16 11 C 0.05 1.27 11.97 85.26 1.02 2.29 16 12 N -0.33 -9.69 12.62 -56.79 -0.72 -10.40 16 13 N -0.38 -9.27 4.04 -334.14 -1.35 -10.62 16 14 C 0.10 2.33 6.59 41.28 0.27 2.60 16 15 C -0.06 -1.12 6.02 30.05 0.18 -0.94 16 16 C -0.12 -1.40 5.97 30.79 0.18 -1.22 16 17 C -0.13 -1.49 5.93 30.72 0.18 -1.31 16 18 C 0.12 1.96 7.28 86.43 0.63 2.59 16 19 C -0.11 -3.82 5.58 30.62 0.17 -3.65 16 20 C -0.12 -4.38 5.93 30.67 0.18 -4.20 16 21 C 0.18 8.03 5.29 86.36 0.46 8.49 16 22 N -0.59 -26.59 2.65 -675.23 -1.79 -28.38 16 23 C -0.24 -11.76 8.63 84.03 0.73 -11.03 16 24 H 0.08 3.76 6.20 -2.90 -0.02 3.75 16 25 C -0.05 -2.68 4.97 84.86 0.42 -2.26 16 26 N -0.94 -52.99 11.09 21.65 0.24 -52.75 16 27 Si 0.96 42.13 29.58 68.60 2.03 44.16 16 28 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.31 -14.14 7.11 99.48 0.71 -13.43 16 30 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 31 H 0.06 2.01 6.40 -2.39 -0.02 1.99 16 32 H 0.05 1.71 7.66 -2.39 -0.02 1.69 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 12.28 7.78 -92.71 -0.72 11.55 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.11 2.10 7.88 -2.39 -0.02 2.08 16 37 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.10 1.56 7.93 -2.38 -0.02 1.54 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 0.81 8.12 -2.38 -0.02 0.79 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 49 H 0.06 2.05 7.53 -2.39 -0.02 2.03 16 50 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 51 H 0.06 3.07 6.01 -2.38 -0.01 3.05 16 52 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -68.82 401.49 3.02 -65.80 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.19 Total: 29.00 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.99 Total: 7.45 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -5.15 Total: -124.71 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.82 3.02 -65.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993475924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.016 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds