Wall clock time and date at job start Wed Apr 1 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.57940 * 2 1 4 4 C 1.53184 * 109.70258 * 120.35557 * 2 1 3 5 5 H 1.08998 * 109.50226 * 54.54529 * 4 2 1 6 6 N 1.46496 * 109.50316 * 294.47566 * 4 2 1 7 7 C 1.34776 * 120.00256 * 154.99957 * 6 4 2 8 8 O 1.21601 * 119.99839 * 0.02562 * 7 6 4 9 9 C 1.47433 * 119.99866 * 180.02562 * 7 6 4 10 10 C 1.38043 * 126.41580 * 359.68845 * 9 7 6 11 11 N 1.34265 * 107.41357 * 179.87215 * 10 9 7 12 12 C 1.46494 * 125.74985 * 180.11047 * 11 10 9 13 13 N 1.39936 * 108.49137 * 0.39661 * 11 10 9 14 14 C 1.30441 * 108.89765 * 359.74846 * 13 11 10 15 15 C 1.50704 * 125.98853 * 179.97438 * 14 13 11 16 16 C 1.53785 * 113.61136 * 39.13751 * 15 14 13 17 17 C 1.53955 * 87.01921 * 220.04880 * 16 15 14 18 18 C 1.53781 * 113.61279 * 301.53391 * 15 14 13 19 19 C 1.53047 * 109.30881 * 174.49267 * 4 2 1 20 20 C 1.53033 * 109.53961 * 298.63791 * 19 4 2 21 21 C 1.52760 * 109.38517 * 61.24189 * 20 19 4 22 22 N 1.46922 * 109.58817 * 239.72301 * 2 1 3 23 23 C 1.36944 * 120.62724 * 6.43270 * 22 2 1 24 24 H 1.07990 * 120.00157 * 329.86403 * 23 22 2 25 25 C 1.38811 * 119.99793 * 149.87200 * 23 22 2 26 26 N 1.31618 * 120.00094 * 145.21550 * 25 23 22 27 27 Si 1.86801 * 119.99905 * 325.21958 * 25 23 22 28 28 H 1.48498 * 109.47305 * 270.00208 * 27 25 23 29 29 H 1.48506 * 109.47065 * 30.00126 * 27 25 23 30 30 H 1.48499 * 109.47135 * 150.00051 * 27 25 23 31 31 H 1.09000 * 109.46914 * 180.28491 * 1 2 3 32 32 H 1.08999 * 109.47531 * 300.27865 * 1 2 3 33 33 H 1.08998 * 109.47494 * 60.28263 * 1 2 3 34 34 H 0.97000 * 119.99709 * 335.00682 * 6 4 2 35 35 H 1.07995 * 126.29190 * 0.02562 * 10 9 7 36 36 H 1.08999 * 109.47591 * 270.30792 * 12 11 10 37 37 H 1.09004 * 109.47457 * 30.30803 * 12 11 10 38 38 H 1.09004 * 109.47490 * 150.30738 * 12 11 10 39 39 H 1.08993 * 112.85135 * 170.33461 * 15 14 13 40 40 H 1.08995 * 113.61449 * 334.57250 * 16 15 14 41 41 H 1.09000 * 113.60750 * 105.47009 * 16 15 14 42 42 H 1.08996 * 113.53219 * 270.81358 * 17 16 15 43 43 H 1.08999 * 113.74259 * 139.94547 * 17 16 15 44 44 H 1.09000 * 113.61563 * 254.52331 * 18 15 14 45 45 H 1.08995 * 113.61463 * 25.34571 * 18 15 14 46 46 H 1.09009 * 109.46000 * 58.65973 * 19 4 2 47 47 H 1.08997 * 109.45929 * 178.62469 * 19 4 2 48 48 H 1.09005 * 109.49791 * 181.31518 * 20 19 4 49 49 H 1.09004 * 109.49947 * 301.37755 * 20 19 4 50 50 H 1.09006 * 109.51179 * 185.71057 * 21 20 19 51 51 H 1.08999 * 109.43425 * 65.41876 * 21 20 19 52 52 H 0.97001 * 120.00443 * 355.27281 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 1.2444 5 1 1.6081 -1.7257 1.2905 6 7 1.6727 0.0255 2.4434 7 6 1.5521 -0.6071 3.6273 8 8 1.7539 -1.8041 3.7004 9 6 1.1754 0.1520 4.8337 10 6 0.9228 1.5073 4.9035 11 7 0.6127 1.7932 6.1781 12 6 0.2710 3.1190 6.6992 13 7 0.6774 0.6123 6.9262 14 6 1.0113 -0.3705 6.1362 15 6 1.1912 -1.8107 6.5417 16 6 0.1547 -2.2954 7.5691 17 6 1.3065 -3.0536 8.2537 18 6 2.2556 -2.0151 7.6328 19 6 3.5706 -0.8443 1.1673 20 6 3.9602 -1.6606 -0.0671 21 6 3.4648 -0.9472 -1.3238 22 7 2.0226 -0.6979 -1.1954 23 6 1.1533 -1.1132 -2.1686 24 1 0.1419 -1.3875 -1.9079 25 6 1.5723 -1.1817 -3.4902 26 7 1.1121 -2.1302 -4.2782 27 14 2.7894 0.0723 -4.1503 28 1 2.0506 1.2350 -4.7047 29 1 3.6761 0.5283 -3.0498 30 1 3.6091 -0.5496 -5.2211 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3634 0.5181 0.8874 33 1 -0.3634 0.5094 -0.8925 34 1 1.5120 0.9803 2.3851 35 1 0.9644 2.2084 4.0830 36 1 1.1789 3.6265 7.0252 37 1 -0.2109 3.7042 5.9159 38 1 -0.4094 3.0131 7.5442 39 1 1.3063 -2.4794 5.6888 40 1 -0.2638 -1.4944 8.1784 41 1 -0.6080 -2.9485 7.1449 42 1 1.4521 -4.0631 7.8693 43 1 1.2705 -3.0163 9.3425 44 1 3.1865 -2.4423 7.2600 45 1 2.4136 -1.1368 8.2586 46 1 4.0072 0.1521 1.0964 47 1 3.9430 -1.3409 2.0632 48 1 5.0447 -1.7622 -0.1087 49 1 3.5043 -2.6489 -0.0085 50 1 3.6510 -1.5743 -2.1958 51 1 3.9911 0.0009 -1.4339 52 1 0.5342 -2.8214 -3.9188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993499360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:17 Heat of formation + Delta-G solvation = 79.944859 kcal Electronic energy + Delta-G solvation = -31422.393882 eV Core-core repulsion = 27424.732433 eV Total energy + Delta-G solvation = -3997.661449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.67178 -39.42584 -38.55099 -37.62297 -34.34475 -33.51018 -32.78181 -31.80483 -30.82240 -29.39182 -28.07365 -26.38236 -25.67706 -25.29620 -24.56920 -23.03296 -21.91127 -20.85013 -20.68686 -20.04132 -19.46252 -18.91203 -17.78508 -16.98109 -16.20122 -15.93039 -15.72395 -15.54612 -15.16019 -14.66873 -14.56015 -14.51173 -13.95629 -13.65245 -13.50743 -13.46359 -13.18505 -13.05596 -13.03100 -12.58139 -12.52469 -12.44946 -12.17972 -11.96643 -11.61133 -11.44008 -11.24076 -11.17913 -10.81444 -10.66285 -10.58066 -10.46859 -10.42684 -10.39202 -10.24959 -9.84669 -9.55229 -9.49561 -9.45284 -9.16827 -8.88917 -8.60576 -8.24211 -6.96672 -6.32936 -3.26050 1.34145 2.04792 2.09423 3.45444 3.52329 3.57580 3.57756 3.72362 4.07891 4.32879 4.55135 4.57531 4.63235 4.67170 4.71161 4.89242 4.91745 4.95826 4.98699 5.12214 5.26912 5.33572 5.39953 5.40847 5.54274 5.59928 5.64988 5.67928 5.78903 5.80723 5.82281 5.89355 5.95559 6.08530 6.11681 6.24060 6.28841 6.31913 6.36903 6.44738 6.49733 6.55252 6.56580 6.61928 6.72556 6.87732 6.89883 6.97043 7.12476 7.41243 7.81255 8.12138 8.47353 8.53537 9.05343 9.66071 10.25880 11.06581 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.002665 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.264373 B =10504.245424 C =11241.949967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 H 0.027 0.973 4 C 0.133 3.867 5 H 0.088 0.912 6 N -0.718 5.718 7 C 0.592 3.408 8 O -0.542 6.542 9 C -0.280 4.280 10 C 0.095 3.905 11 N -0.364 5.364 12 C 0.098 3.902 13 N -0.299 5.299 14 C 0.145 3.855 15 C -0.043 4.043 16 C -0.130 4.130 17 C -0.140 4.140 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.136 4.136 21 C 0.140 3.860 22 N -0.590 5.590 23 C -0.360 4.360 24 H 0.069 0.931 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 1.016 2.984 28 H -0.299 1.299 29 H -0.269 1.269 30 H -0.295 1.295 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.391 0.609 35 H 0.182 0.818 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.067 0.933 51 H 0.030 0.970 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 9.514 23.996 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 H 0.045 0.955 4 C 0.028 3.972 5 H 0.106 0.894 6 N -0.368 5.368 7 C 0.379 3.621 8 O -0.420 6.420 9 C -0.295 4.295 10 C -0.056 4.056 11 N -0.142 5.142 12 C -0.043 4.043 13 N -0.120 5.120 14 C -0.022 4.022 15 C -0.063 4.063 16 C -0.168 4.168 17 C -0.177 4.177 18 C -0.164 4.164 19 C -0.156 4.156 20 C -0.176 4.176 21 C 0.015 3.985 22 N -0.315 5.315 23 C -0.487 4.487 24 H 0.087 0.913 25 C -0.199 4.199 26 N -0.537 5.537 27 Si 0.845 3.155 28 H -0.227 1.227 29 H -0.195 1.195 30 H -0.222 1.222 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.224 0.776 35 H 0.199 0.801 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.048 0.952 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.053 9.635 23.888 25.780 hybrid contribution -0.675 0.190 0.381 0.798 sum 0.379 9.826 24.269 26.186 Atomic orbital electron populations 1.21776 0.95308 1.01875 1.00086 1.20606 0.93621 0.93322 0.86546 0.95515 1.21706 0.94821 0.97097 0.83591 0.89374 1.45941 1.70806 1.11769 1.08260 1.17211 0.76457 0.86556 0.81858 1.90705 1.51441 1.14505 1.85370 1.20389 1.20413 0.92843 0.95844 1.23083 0.97337 0.96589 0.88592 1.48275 1.51763 1.08161 1.06019 1.21962 1.02325 0.78440 1.01567 1.77091 1.25916 0.90109 1.18900 1.22221 0.94640 0.95573 0.89755 1.21423 0.97707 0.88500 0.98666 1.22978 0.96467 0.99956 0.97368 1.22824 0.96535 0.98436 0.99940 1.22894 0.97259 0.99350 0.96880 1.21759 0.95649 0.99894 0.98262 1.21997 0.99412 1.00035 0.96112 1.21354 0.84644 0.96925 0.95600 1.44334 1.02428 1.65498 1.19192 1.20038 0.96990 1.44247 0.87442 0.91293 1.26131 1.01287 1.00041 0.92400 1.70887 1.32355 1.10517 1.39916 0.84627 0.77017 0.77584 0.76244 1.22698 1.19467 1.22170 0.92649 0.94336 0.91762 0.77583 0.80104 0.90361 0.89069 0.88967 0.84983 0.89742 0.91260 0.89911 0.91420 0.91112 0.90142 0.92785 0.92652 0.92651 0.91904 0.91511 0.95238 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.84 37.16 0.29 -2.14 16 2 C 0.17 3.15 3.03 -67.60 -0.20 2.95 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.13 2.32 2.00 -67.81 -0.14 2.18 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 6 N -0.72 -10.08 4.58 -54.77 -0.25 -10.33 16 7 C 0.59 9.11 7.78 -12.52 -0.10 9.02 16 8 O -0.54 -10.16 14.36 5.28 0.08 -10.08 16 9 C -0.28 -3.66 6.13 -105.06 -0.64 -4.30 16 10 C 0.10 0.90 10.99 -16.56 -0.18 0.72 16 11 N -0.36 -3.44 3.98 -67.60 -0.27 -3.71 16 12 C 0.10 0.45 11.44 59.84 0.68 1.14 16 13 N -0.30 -3.68 12.13 33.90 0.41 -3.27 16 14 C 0.15 1.94 6.31 -82.02 -0.52 1.42 16 15 C -0.04 -0.54 3.97 -90.96 -0.36 -0.90 16 16 C -0.13 -1.37 7.63 -25.82 -0.20 -1.57 16 17 C -0.14 -1.30 8.09 -25.83 -0.21 -1.50 16 18 C -0.13 -1.34 7.63 -25.92 -0.20 -1.54 16 19 C -0.12 -1.97 5.46 -26.69 -0.15 -2.12 16 20 C -0.14 -2.49 6.06 -26.84 -0.16 -2.65 16 21 C 0.14 2.99 4.35 -3.93 -0.02 2.98 16 22 N -0.59 -13.56 2.68 -165.04 -0.44 -14.00 16 23 C -0.36 -9.63 8.68 -15.06 -0.13 -9.76 16 24 H 0.07 1.97 6.43 -52.49 -0.34 1.63 16 25 C 0.01 0.16 4.83 -17.43 -0.08 0.07 16 26 N -0.90 -27.15 13.70 55.49 0.76 -26.39 16 27 Si 1.02 24.70 27.08 -169.99 -4.60 20.10 16 28 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.27 -5.96 4.72 56.52 0.27 -5.70 16 30 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 31 H 0.05 1.12 7.43 -51.93 -0.39 0.74 16 32 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.39 4.28 7.53 -40.82 -0.31 3.97 16 35 H 0.18 1.01 7.46 -52.49 -0.39 0.62 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 1.93 6.00 -51.93 -0.31 1.62 16 40 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.07 1.55 6.00 -51.93 -0.31 1.24 16 51 H 0.03 0.62 6.55 -51.93 -0.34 0.28 16 52 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -33.71 402.41 -9.33 -43.04 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.77 Total: 4.60 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.31 Total: -6.02 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.21 Total: -57.70 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.60 Total: 20.10 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.71 -9.33 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993499360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.982 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds