Wall clock time and date at job start Wed Apr 1 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.57940 * 2 1 4 4 C 1.53184 * 109.70258 * 120.35557 * 2 1 3 5 5 H 1.08998 * 109.50226 * 54.54529 * 4 2 1 6 6 N 1.46496 * 109.50316 * 294.47566 * 4 2 1 7 7 C 1.34776 * 120.00256 * 154.99957 * 6 4 2 8 8 O 1.21601 * 119.99839 * 0.02562 * 7 6 4 9 9 C 1.47433 * 119.99866 * 180.02562 * 7 6 4 10 10 C 1.38043 * 126.41580 * 359.68845 * 9 7 6 11 11 N 1.34265 * 107.41357 * 179.87215 * 10 9 7 12 12 C 1.46494 * 125.74985 * 180.11047 * 11 10 9 13 13 N 1.39936 * 108.49137 * 0.39661 * 11 10 9 14 14 C 1.30441 * 108.89765 * 359.74846 * 13 11 10 15 15 C 1.50704 * 125.98853 * 179.97438 * 14 13 11 16 16 C 1.53785 * 113.61136 * 39.13751 * 15 14 13 17 17 C 1.53955 * 87.01921 * 220.04880 * 16 15 14 18 18 C 1.53781 * 113.61279 * 301.53391 * 15 14 13 19 19 C 1.53047 * 109.30881 * 174.49267 * 4 2 1 20 20 C 1.53033 * 109.53961 * 298.63791 * 19 4 2 21 21 C 1.52760 * 109.38517 * 61.24189 * 20 19 4 22 22 N 1.46922 * 109.58817 * 239.72301 * 2 1 3 23 23 C 1.36944 * 120.62724 * 6.43270 * 22 2 1 24 24 H 1.07990 * 120.00157 * 329.86403 * 23 22 2 25 25 C 1.38811 * 119.99793 * 149.87200 * 23 22 2 26 26 N 1.31618 * 120.00094 * 145.21550 * 25 23 22 27 27 Si 1.86801 * 119.99905 * 325.21958 * 25 23 22 28 28 H 1.48498 * 109.47305 * 270.00208 * 27 25 23 29 29 H 1.48506 * 109.47065 * 30.00126 * 27 25 23 30 30 H 1.48499 * 109.47135 * 150.00051 * 27 25 23 31 31 H 1.09000 * 109.46914 * 180.28491 * 1 2 3 32 32 H 1.08999 * 109.47531 * 300.27865 * 1 2 3 33 33 H 1.08998 * 109.47494 * 60.28263 * 1 2 3 34 34 H 0.97000 * 119.99709 * 335.00682 * 6 4 2 35 35 H 1.07995 * 126.29190 * 0.02562 * 10 9 7 36 36 H 1.08999 * 109.47591 * 270.30792 * 12 11 10 37 37 H 1.09004 * 109.47457 * 30.30803 * 12 11 10 38 38 H 1.09004 * 109.47490 * 150.30738 * 12 11 10 39 39 H 1.08993 * 112.85135 * 170.33461 * 15 14 13 40 40 H 1.08995 * 113.61449 * 334.57250 * 16 15 14 41 41 H 1.09000 * 113.60750 * 105.47009 * 16 15 14 42 42 H 1.08996 * 113.53219 * 270.81358 * 17 16 15 43 43 H 1.08999 * 113.74259 * 139.94547 * 17 16 15 44 44 H 1.09000 * 113.61563 * 254.52331 * 18 15 14 45 45 H 1.08995 * 113.61463 * 25.34571 * 18 15 14 46 46 H 1.09009 * 109.46000 * 58.65973 * 19 4 2 47 47 H 1.08997 * 109.45929 * 178.62469 * 19 4 2 48 48 H 1.09005 * 109.49791 * 181.31518 * 20 19 4 49 49 H 1.09004 * 109.49947 * 301.37755 * 20 19 4 50 50 H 1.09006 * 109.51179 * 185.71057 * 21 20 19 51 51 H 1.08999 * 109.43425 * 65.41876 * 21 20 19 52 52 H 0.97001 * 120.00443 * 355.27281 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 1.2444 5 1 1.6081 -1.7257 1.2905 6 7 1.6727 0.0255 2.4434 7 6 1.5521 -0.6071 3.6273 8 8 1.7539 -1.8041 3.7004 9 6 1.1754 0.1520 4.8337 10 6 0.9228 1.5073 4.9035 11 7 0.6127 1.7932 6.1781 12 6 0.2710 3.1190 6.6992 13 7 0.6774 0.6123 6.9262 14 6 1.0113 -0.3705 6.1362 15 6 1.1912 -1.8107 6.5417 16 6 0.1547 -2.2954 7.5691 17 6 1.3065 -3.0536 8.2537 18 6 2.2556 -2.0151 7.6328 19 6 3.5706 -0.8443 1.1673 20 6 3.9602 -1.6606 -0.0671 21 6 3.4648 -0.9472 -1.3238 22 7 2.0226 -0.6979 -1.1954 23 6 1.1533 -1.1132 -2.1686 24 1 0.1419 -1.3875 -1.9079 25 6 1.5723 -1.1817 -3.4902 26 7 1.1121 -2.1302 -4.2782 27 14 2.7894 0.0723 -4.1503 28 1 2.0506 1.2350 -4.7047 29 1 3.6761 0.5283 -3.0498 30 1 3.6091 -0.5496 -5.2211 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3634 0.5181 0.8874 33 1 -0.3634 0.5094 -0.8925 34 1 1.5120 0.9803 2.3851 35 1 0.9644 2.2084 4.0830 36 1 1.1789 3.6265 7.0252 37 1 -0.2109 3.7042 5.9159 38 1 -0.4094 3.0131 7.5442 39 1 1.3063 -2.4794 5.6888 40 1 -0.2638 -1.4944 8.1784 41 1 -0.6080 -2.9485 7.1449 42 1 1.4521 -4.0631 7.8693 43 1 1.2705 -3.0163 9.3425 44 1 3.1865 -2.4423 7.2600 45 1 2.4136 -1.1368 8.2586 46 1 4.0072 0.1521 1.0964 47 1 3.9430 -1.3409 2.0632 48 1 5.0447 -1.7622 -0.1087 49 1 3.5043 -2.6489 -0.0085 50 1 3.6510 -1.5743 -2.1958 51 1 3.9911 0.0009 -1.4339 52 1 0.5342 -2.8214 -3.9188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993499360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:16 Heat of formation + Delta-G solvation = 58.013664 kcal Electronic energy + Delta-G solvation = -31423.344889 eV Core-core repulsion = 27424.732433 eV Total energy + Delta-G solvation = -3998.612457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.51417 -40.74606 -39.39635 -39.09451 -35.88625 -34.47499 -34.19099 -33.49537 -32.11724 -30.68226 -28.74640 -27.89372 -26.52855 -26.49634 -26.05536 -24.30924 -23.07338 -22.28610 -21.77258 -21.36763 -20.81734 -19.78993 -19.08003 -18.62201 -17.27095 -17.00251 -16.67493 -16.41816 -16.28094 -16.20979 -15.91484 -15.73064 -15.43316 -15.11880 -14.92882 -14.75173 -14.18282 -14.13509 -13.90927 -13.69769 -13.62048 -13.37780 -13.34013 -13.29743 -12.98512 -12.88514 -12.74432 -12.49692 -12.12201 -12.07659 -11.94676 -11.81263 -11.65683 -11.54373 -11.40564 -11.34822 -11.26140 -11.07410 -10.68626 -10.36244 -10.29594 -10.03455 -9.57099 -8.94496 -8.49175 -5.38799 0.55010 1.08422 1.46996 1.57927 1.61785 1.81034 2.25525 2.48521 2.67536 3.03384 3.33117 3.48600 3.59854 3.80093 3.82607 3.85717 3.93389 4.00980 4.03809 4.14349 4.23899 4.27734 4.30594 4.44790 4.46347 4.50568 4.56359 4.61411 4.71868 4.73128 4.77486 4.80501 4.82586 4.88287 4.94104 4.99888 5.03697 5.04660 5.08481 5.11801 5.23297 5.27642 5.28135 5.40040 5.40862 5.45785 5.60422 5.66594 5.92980 5.98468 6.34103 6.54231 6.75063 6.97702 7.40292 7.69586 8.20344 8.86638 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.002665 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.264373 B =10504.245424 C =11241.949967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.165 3.835 3 H 0.060 0.940 4 C 0.148 3.852 5 H 0.045 0.955 6 N -0.703 5.703 7 C 0.592 3.408 8 O -0.586 6.586 9 C -0.318 4.318 10 C 0.123 3.877 11 N -0.358 5.358 12 C 0.087 3.913 13 N -0.319 5.319 14 C 0.129 3.871 15 C -0.055 4.055 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.135 3.865 22 N -0.606 5.606 23 C -0.338 4.338 24 H 0.036 0.964 25 C -0.051 4.051 26 N -0.942 5.942 27 Si 1.064 2.936 28 H -0.297 1.297 29 H -0.230 1.230 30 H -0.306 1.306 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.411 0.589 35 H 0.228 0.772 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.053 0.947 48 H 0.084 0.916 49 H 0.035 0.965 50 H 0.042 0.958 51 H 0.052 0.948 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 13.632 26.253 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.059 3.941 3 H 0.078 0.922 4 C 0.041 3.959 5 H 0.063 0.937 6 N -0.355 5.355 7 C 0.381 3.619 8 O -0.467 6.467 9 C -0.333 4.333 10 C -0.031 4.031 11 N -0.135 5.135 12 C -0.052 4.052 13 N -0.140 5.140 14 C -0.038 4.038 15 C -0.075 4.075 16 C -0.163 4.163 17 C -0.167 4.167 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.169 4.169 21 C 0.010 3.990 22 N -0.332 5.332 23 C -0.468 4.468 24 H 0.053 0.947 25 C -0.248 4.248 26 N -0.582 5.582 27 Si 0.889 3.111 28 H -0.225 1.225 29 H -0.154 1.154 30 H -0.233 1.233 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.248 0.752 35 H 0.244 0.756 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.103 0.897 49 H 0.054 0.946 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.356 13.821 26.223 29.736 hybrid contribution -1.184 -1.052 -0.180 1.594 sum 1.172 12.769 26.043 29.029 Atomic orbital electron populations 1.21696 0.95260 1.00071 1.01221 1.20802 0.93759 0.94396 0.85190 0.92232 1.21239 0.95131 0.95230 0.84264 0.93704 1.45624 1.70592 1.12466 1.06782 1.17562 0.75528 0.86150 0.82612 1.90693 1.53388 1.16631 1.86039 1.20256 1.23797 0.94529 0.94699 1.23644 0.94199 0.95677 0.89552 1.48713 1.49996 1.08785 1.05965 1.22421 1.03542 0.76362 1.02906 1.77035 1.26459 0.90964 1.19539 1.22316 0.95180 0.95929 0.90331 1.21359 0.99392 0.88476 0.98318 1.22936 0.96469 0.99997 0.96914 1.22797 0.94965 0.98063 1.00833 1.22852 0.96921 0.99794 0.96349 1.21693 0.94960 1.00927 0.97174 1.21903 1.00962 0.98516 0.95532 1.21442 0.83795 0.97665 0.96061 1.44441 1.02791 1.66439 1.19498 1.19869 0.96226 1.42241 0.88432 0.94664 1.27235 1.03382 1.00970 0.93239 1.71018 1.34699 1.11901 1.40619 0.84014 0.75555 0.75074 0.76435 1.22450 1.15366 1.23332 0.96017 0.90332 0.93312 0.75213 0.75581 0.88709 0.85800 0.88765 0.87813 0.89726 0.91494 0.89555 0.89683 0.91527 0.90051 0.90072 0.92864 0.89709 0.94612 0.93956 0.93047 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.84 71.98 0.56 -3.92 16 2 C 0.16 5.91 3.03 44.97 0.14 6.04 16 3 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 4 C 0.15 4.95 2.00 45.07 0.09 5.04 16 5 H 0.04 1.91 7.58 -2.39 -0.02 1.89 16 6 N -0.70 -18.05 4.58 -445.44 -2.04 -20.09 16 7 C 0.59 17.79 7.78 86.67 0.67 18.46 16 8 O -0.59 -22.75 14.36 -4.04 -0.06 -22.81 16 9 C -0.32 -7.79 6.13 -20.15 -0.12 -7.92 16 10 C 0.12 1.84 10.99 84.27 0.93 2.76 16 11 N -0.36 -5.48 3.98 -367.78 -1.46 -6.95 16 12 C 0.09 0.42 11.44 127.77 1.46 1.88 16 13 N -0.32 -7.29 12.13 -46.67 -0.57 -7.85 16 14 C 0.13 3.37 6.31 43.52 0.27 3.64 16 15 C -0.06 -1.42 3.97 -11.01 -0.04 -1.47 16 16 C -0.13 -2.66 7.63 31.18 0.24 -2.43 16 17 C -0.13 -2.32 8.09 31.18 0.25 -2.07 16 18 C -0.12 -2.59 7.63 31.12 0.24 -2.35 16 19 C -0.11 -3.41 5.46 30.62 0.17 -3.24 16 20 C -0.13 -4.55 6.06 30.53 0.19 -4.37 16 21 C 0.14 5.51 4.35 86.22 0.37 5.89 16 22 N -0.61 -27.43 2.68 -676.06 -1.81 -29.24 16 23 C -0.34 -18.59 8.68 84.03 0.73 -17.86 16 24 H 0.04 2.14 6.43 -2.92 -0.02 2.12 16 25 C -0.05 -2.93 4.83 84.86 0.41 -2.52 16 26 N -0.94 -59.36 13.70 21.65 0.30 -59.06 16 27 Si 1.06 49.79 27.08 68.60 1.86 51.65 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.23 -9.17 4.72 99.48 0.47 -8.70 16 30 H -0.31 -14.80 7.11 99.48 0.71 -14.10 16 31 H 0.02 0.89 7.43 -2.39 -0.02 0.87 16 32 H 0.08 2.14 7.81 -2.39 -0.02 2.12 16 33 H 0.05 1.88 7.63 -2.39 -0.02 1.86 16 34 H 0.41 7.12 7.53 -92.71 -0.70 6.42 16 35 H 0.23 1.07 7.46 -2.91 -0.02 1.05 16 36 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.12 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 3.27 6.00 -2.39 -0.01 3.26 16 40 H 0.08 1.79 7.79 -2.39 -0.02 1.77 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 46 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 49 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.04 1.93 6.00 -2.38 -0.01 1.92 16 51 H 0.05 1.91 6.55 -2.39 -0.02 1.89 16 52 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 Total: -1.00 -79.69 402.41 2.72 -76.97 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.05 Total: 21.81 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 6.56 Total: -4.42 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.58 Total: -123.19 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.86 Total: 51.65 kcal Total: -79.69 2.72 -76.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993499360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.980 kcal (2) G-P(sol) polarization free energy of solvation -79.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds