Wall clock time and date at job start Wed Apr 1 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.69876 * 2 1 4 4 C 1.53184 * 109.59033 * 239.63859 * 2 1 3 5 5 H 1.09001 * 109.50312 * 305.56142 * 4 2 1 6 6 N 1.46508 * 109.49561 * 65.63169 * 4 2 1 7 7 C 1.34776 * 119.99490 * 204.99878 * 6 4 2 8 8 O 1.21277 * 120.00575 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99556 * 179.97438 * 7 6 4 10 10 N 1.46499 * 109.47023 * 180.02562 * 9 7 6 11 11 C 1.35311 * 126.49715 * 265.02477 * 10 9 7 12 12 N 1.30756 * 108.76902 * 179.97438 * 11 10 9 13 13 C 1.33583 * 109.14498 * 359.97438 * 12 11 10 14 14 C 1.35031 * 107.97682 * 0.05547 * 13 12 11 15 15 C 1.50650 * 124.45321 * 179.97438 * 14 13 12 16 16 C 1.53401 * 108.41409 * 343.58057 * 15 14 13 17 17 C 1.53186 * 109.40861 * 49.62277 * 16 15 14 18 18 C 1.50859 * 128.03202 * 180.16264 * 13 12 11 19 19 C 1.53044 * 109.31280 * 185.57627 * 4 2 1 20 20 C 1.53034 * 109.53981 * 61.36848 * 19 4 2 21 21 C 1.53197 * 109.31175 * 298.63587 * 20 19 4 22 22 N 1.46926 * 108.77437 * 54.63443 * 21 20 19 23 23 C 1.36941 * 120.63120 * 126.41665 * 22 21 20 24 24 H 1.08004 * 119.99345 * 209.03247 * 23 22 21 25 25 C 1.38807 * 120.00300 * 29.03005 * 23 22 21 26 26 N 1.31618 * 119.99738 * 15.05375 * 25 23 22 27 27 Si 1.86801 * 120.00221 * 195.05661 * 25 23 22 28 28 H 1.48497 * 109.47151 * 89.99876 * 27 25 23 29 29 H 1.48499 * 109.46883 * 210.00010 * 27 25 23 30 30 H 1.48503 * 109.46812 * 329.99598 * 27 25 23 31 31 H 1.09000 * 109.46769 * 180.35736 * 1 2 3 32 32 H 1.08995 * 109.47825 * 300.35445 * 1 2 3 33 33 H 1.08999 * 109.46943 * 60.36421 * 1 2 3 34 34 H 0.97001 * 120.00116 * 24.98763 * 6 4 2 35 35 H 1.09006 * 109.46969 * 60.00137 * 9 7 6 36 36 H 1.09002 * 109.47586 * 300.00227 * 9 7 6 37 37 H 1.08004 * 125.62174 * 359.97375 * 11 10 9 38 38 H 1.08995 * 109.68846 * 103.32297 * 15 14 13 39 39 H 1.09001 * 109.68068 * 223.84481 * 15 14 13 40 40 H 1.09004 * 109.47678 * 169.65409 * 16 15 14 41 41 H 1.08999 * 109.47603 * 289.66528 * 16 15 14 42 42 H 1.09000 * 109.45086 * 169.98419 * 17 16 15 43 43 H 1.09005 * 109.45011 * 50.03293 * 17 16 15 44 44 H 1.09000 * 109.67731 * 282.95077 * 18 13 12 45 45 H 1.08992 * 109.67828 * 43.49070 * 18 13 12 46 46 H 1.08999 * 109.45918 * 181.39109 * 19 4 2 47 47 H 1.08999 * 109.45843 * 301.34843 * 19 4 2 48 48 H 1.08994 * 109.50426 * 178.68424 * 20 19 4 49 49 H 1.09000 * 109.49562 * 58.58061 * 20 19 4 50 50 H 1.08992 * 109.58877 * 294.84586 * 21 20 19 51 51 H 1.08998 * 109.70510 * 174.48736 * 21 20 19 52 52 H 0.97000 * 119.99876 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2452 5 1 1.6027 -1.7252 -1.2915 6 7 1.6707 0.0266 -2.4434 7 6 1.5475 -0.6051 -3.6276 8 8 1.7457 -1.7993 -3.7014 9 6 1.1633 0.1725 -4.8600 10 7 1.0957 -0.7345 -6.0084 11 6 2.0815 -0.9743 -6.9037 12 7 1.6498 -1.8405 -7.7829 13 6 0.3927 -2.1791 -7.4836 14 6 0.0294 -1.4961 -6.3769 15 6 -1.3206 -1.5995 -5.7163 16 6 -2.2964 -2.2473 -6.7070 17 6 -1.6682 -3.5210 -7.2812 18 6 -0.5079 -3.1459 -8.2116 19 6 3.5676 -0.8480 -1.1699 20 6 3.9570 -1.6656 0.0637 21 6 3.4650 -0.9467 1.3240 22 7 2.0225 -0.6995 1.1946 23 6 1.1537 -1.1126 2.1691 24 1 0.1360 -1.3675 1.9124 25 6 1.5808 -1.2038 3.4867 26 7 2.7035 -0.6245 3.8560 27 14 0.5624 -2.1486 4.7355 28 1 0.9977 -3.5681 4.7569 29 1 0.7526 -1.5521 6.0821 30 1 -0.8726 -2.0763 4.3603 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3634 0.5193 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 1.5123 0.9818 -2.3845 35 1 1.9092 0.9445 -5.0497 36 1 0.1896 0.6379 -4.7072 37 1 3.0633 -0.5244 -6.8939 38 1 -1.2448 -2.2152 -4.8201 39 1 -1.6757 -0.6043 -5.4490 40 1 -3.2237 -2.4986 -6.1921 41 1 -2.5082 -1.5496 -7.5173 42 1 -2.4200 -4.0748 -7.8435 43 1 -1.2950 -4.1409 -6.4660 44 1 -0.8973 -2.6759 -9.1147 45 1 0.0533 -4.0419 -8.4764 46 1 3.9380 -1.3448 -2.0666 47 1 4.0061 0.1474 -1.0991 48 1 5.0413 -1.7694 0.1041 49 1 3.4984 -2.6527 0.0056 50 1 3.9902 0.0022 1.4319 51 1 3.6520 -1.5694 2.1988 52 1 3.0018 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993622085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:31 Heat of formation + Delta-G solvation = 13.906842 kcal Electronic energy + Delta-G solvation = -31459.825616 eV Core-core repulsion = 27459.300544 eV Total energy + Delta-G solvation = -4000.525072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.28944 -41.05382 -39.27409 -37.50691 -35.96250 -35.17039 -34.28567 -33.44519 -31.61378 -30.91301 -29.83699 -28.77025 -27.61982 -26.82371 -24.48608 -24.01404 -22.89139 -22.38601 -22.16032 -21.41581 -20.96434 -19.78501 -18.63635 -18.25363 -18.00247 -17.16706 -16.62727 -16.37517 -16.35307 -15.70436 -15.62224 -15.58935 -15.31289 -15.05815 -14.80135 -14.68513 -14.55833 -14.36537 -14.31194 -14.11484 -13.43290 -13.39022 -13.28438 -13.18881 -12.84438 -12.82198 -12.71508 -12.54123 -12.37931 -12.01746 -11.86181 -11.82928 -11.80374 -11.76902 -11.73999 -11.65296 -11.30881 -11.14714 -10.75904 -10.54442 -10.36937 -10.06776 -9.01139 -8.67194 -7.87079 -5.33071 0.97467 1.45157 1.48163 1.51114 1.54910 1.70048 2.14138 2.26193 2.52760 3.28735 3.50870 3.55828 3.70343 3.75262 3.82293 3.90327 3.99039 3.99273 4.03873 4.13820 4.18264 4.24403 4.34350 4.38249 4.50522 4.58441 4.60767 4.63871 4.72086 4.75387 4.81774 4.85723 4.91662 5.00896 5.02429 5.10247 5.10735 5.17473 5.19197 5.26670 5.27167 5.44455 5.45275 5.46693 5.49554 5.58210 5.69000 5.75369 5.87493 6.23902 6.40498 6.54554 7.14679 7.15753 7.21200 7.85734 8.36115 9.19672 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002520 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.502020 B =11109.458650 C =11959.278044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.039 0.961 4 C 0.150 3.850 5 H 0.051 0.949 6 N -0.699 5.699 7 C 0.495 3.505 8 O -0.576 6.576 9 C 0.089 3.911 10 N -0.436 5.436 11 C 0.175 3.825 12 N -0.526 5.526 13 C -0.033 4.033 14 C -0.019 4.019 15 C -0.043 4.043 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.032 4.032 19 C -0.108 4.108 20 C -0.131 4.131 21 C 0.175 3.825 22 N -0.601 5.601 23 C -0.252 4.252 24 H 0.073 0.927 25 C -0.048 4.048 26 N -0.933 5.933 27 Si 0.959 3.041 28 H -0.291 1.291 29 H -0.295 1.295 30 H -0.267 1.267 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.418 0.582 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.230 0.770 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.039 0.961 50 H 0.006 0.994 51 H 0.054 0.946 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 5.611 -21.720 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.057 0.943 4 C 0.043 3.957 5 H 0.070 0.930 6 N -0.351 5.351 7 C 0.281 3.719 8 O -0.455 6.455 9 C -0.037 4.037 10 N -0.118 5.118 11 C -0.106 4.106 12 N -0.244 5.244 13 C -0.161 4.161 14 C -0.135 4.135 15 C -0.082 4.082 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.070 4.070 19 C -0.146 4.146 20 C -0.171 4.171 21 C 0.050 3.950 22 N -0.325 5.325 23 C -0.382 4.382 24 H 0.090 0.910 25 C -0.244 4.244 26 N -0.579 5.579 27 Si 0.788 3.212 28 H -0.219 1.219 29 H -0.222 1.222 30 H -0.192 1.192 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.256 0.744 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.246 0.754 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.024 0.976 51 H 0.072 0.928 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.813 4.582 -22.149 23.622 hybrid contribution -0.086 -0.096 2.075 2.079 sum -6.899 4.486 -20.074 21.696 Atomic orbital electron populations 1.21738 0.94326 1.00923 1.01554 1.20740 0.94350 0.93606 0.85466 0.94333 1.21256 0.94638 0.95394 0.84419 0.93033 1.45791 1.69516 1.13004 1.06812 1.21318 0.76941 0.88054 0.85630 1.90796 1.51389 1.17302 1.85973 1.22008 1.09234 0.91420 0.80998 1.44699 1.11806 1.33697 1.21598 1.25498 0.96351 1.00095 0.88621 1.69908 1.11735 1.14730 1.28075 1.20916 0.93029 1.03676 0.98501 1.21251 0.92873 0.99614 0.99725 1.20183 0.87946 1.02300 0.97743 1.21553 0.97596 0.96853 0.98493 1.21616 0.97117 0.97935 0.98751 1.19973 0.93781 0.95731 0.97493 1.21664 0.95537 1.00412 0.97022 1.22025 1.00199 0.98653 0.96209 1.20634 0.83287 0.96193 0.94908 1.44282 1.03068 1.65948 1.19222 1.19449 0.95148 1.36926 0.86726 0.90976 1.25734 0.99011 1.00912 0.98713 1.70149 1.24924 1.46057 1.16818 0.85392 0.79120 0.78172 0.78551 1.21857 1.22185 1.19189 0.94467 0.93323 0.90033 0.74387 0.81526 0.83015 0.75372 0.92187 0.88960 0.89268 0.90536 0.88970 0.93390 0.89946 0.91801 0.93045 0.91059 0.91152 0.94262 0.97564 0.92805 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 7.84 71.98 0.56 -3.59 16 2 C 0.17 5.94 3.03 44.97 0.14 6.08 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 4.77 2.00 45.07 0.09 4.86 16 5 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 6 N -0.70 -14.72 4.57 -442.16 -2.02 -16.74 16 7 C 0.49 11.18 7.87 87.66 0.69 11.87 16 8 O -0.58 -20.08 16.09 -3.02 -0.05 -20.13 16 9 C 0.09 1.12 6.48 85.63 0.56 1.67 16 10 N -0.44 -9.03 2.23 -518.54 -1.16 -10.19 16 11 C 0.18 4.04 12.57 180.10 2.26 6.31 16 12 N -0.53 -15.30 11.25 -187.89 -2.11 -17.41 16 13 C -0.03 -0.87 6.98 41.60 0.29 -0.58 16 14 C -0.02 -0.45 6.73 41.14 0.28 -0.17 16 15 C -0.04 -0.78 6.06 29.97 0.18 -0.59 16 16 C -0.11 -1.50 5.92 30.79 0.18 -1.32 16 17 C -0.12 -1.92 5.90 30.79 0.18 -1.74 16 18 C -0.03 -0.66 6.30 30.03 0.19 -0.47 16 19 C -0.11 -3.50 5.46 30.62 0.17 -3.33 16 20 C -0.13 -5.04 6.08 30.67 0.19 -4.85 16 21 C 0.18 8.22 5.29 86.36 0.46 8.67 16 22 N -0.60 -28.36 2.99 -675.23 -2.02 -30.38 16 23 C -0.25 -13.18 8.61 84.03 0.72 -12.45 16 24 H 0.07 3.67 6.20 -2.91 -0.02 3.65 16 25 C -0.05 -2.62 4.96 84.86 0.42 -2.20 16 26 N -0.93 -53.67 11.14 21.65 0.24 -53.43 16 27 Si 0.96 44.15 29.58 68.60 2.03 46.18 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 30 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 31 H 0.04 1.33 7.40 -2.39 -0.02 1.31 16 32 H 0.05 1.73 7.66 -2.39 -0.02 1.71 16 33 H 0.08 1.89 7.78 -2.39 -0.02 1.87 16 34 H 0.42 5.49 8.60 -92.71 -0.80 4.69 16 35 H 0.17 0.71 8.13 -2.38 -0.02 0.69 16 36 H 0.15 0.95 7.96 -2.39 -0.02 0.93 16 37 H 0.23 3.49 8.06 -2.91 -0.02 3.46 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.18 7.99 -2.39 -0.02 1.16 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 0.97 8.12 -2.38 -0.02 0.95 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 51 H 0.05 2.91 6.06 -2.39 -0.01 2.89 16 52 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -78.28 404.77 2.58 -75.70 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.11 Total: 18.23 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 7.56 Total: 8.17 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -7.07 Total: -128.15 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -78.28 2.58 -75.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993622085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.611 kcal (2) G-P(sol) polarization free energy of solvation -78.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds