Wall clock time and date at job start Wed Apr 1 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.58479 * 2 1 4 4 C 1.53196 * 109.70218 * 120.36646 * 2 1 3 5 5 H 1.09004 * 109.50949 * 54.54815 * 4 2 1 6 6 N 1.46496 * 109.48777 * 294.45162 * 4 2 1 7 7 C 1.34777 * 119.99978 * 155.17053 * 6 4 2 8 8 O 1.21286 * 120.00148 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99894 * 179.97438 * 7 6 4 10 10 N 1.46500 * 109.47245 * 179.97438 * 9 7 6 11 11 C 1.35313 * 126.49986 * 265.03059 * 10 9 7 12 12 N 1.30748 * 108.76903 * 179.97438 * 11 10 9 13 13 C 1.33584 * 109.14737 * 359.97438 * 12 11 10 14 14 C 1.35029 * 107.97574 * 359.77874 * 13 12 11 15 15 C 1.50653 * 124.44478 * 179.47802 * 14 13 12 16 16 C 1.53397 * 108.45417 * 344.17177 * 15 14 13 17 17 C 1.53115 * 109.44184 * 49.40554 * 16 15 14 18 18 C 1.50860 * 128.03163 * 180.13372 * 13 12 11 19 19 C 1.53047 * 109.31189 * 174.50535 * 4 2 1 20 20 C 1.53047 * 109.52526 * 298.61450 * 19 4 2 21 21 C 1.53194 * 109.30936 * 61.37260 * 20 19 4 22 22 N 1.46925 * 108.77629 * 305.36001 * 21 20 19 23 23 C 1.36935 * 120.63293 * 233.63379 * 22 21 20 24 24 H 1.07997 * 120.00279 * 150.15703 * 23 22 21 25 25 C 1.38820 * 119.99823 * 330.15217 * 23 22 21 26 26 N 1.31615 * 119.99827 * 344.50326 * 25 23 22 27 27 Si 1.86798 * 119.99672 * 164.50121 * 25 23 22 28 28 H 1.48499 * 109.47331 * 60.00031 * 27 25 23 29 29 H 1.48500 * 109.46947 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47173 * 299.99718 * 27 25 23 31 31 H 1.09000 * 109.46888 * 180.28882 * 1 2 3 32 32 H 1.09002 * 109.46863 * 300.28190 * 1 2 3 33 33 H 1.08991 * 109.47454 * 60.28275 * 1 2 3 34 34 H 0.96998 * 119.99888 * 335.16243 * 6 4 2 35 35 H 1.08995 * 109.47522 * 299.99935 * 9 7 6 36 36 H 1.09000 * 109.47163 * 60.00445 * 9 7 6 37 37 H 1.07998 * 125.61470 * 359.95188 * 11 10 9 38 38 H 1.09008 * 109.83953 * 224.31080 * 15 14 13 39 39 H 1.09007 * 109.49049 * 103.82511 * 15 14 13 40 40 H 1.09000 * 109.47200 * 289.41932 * 16 15 14 41 41 H 1.08994 * 109.48107 * 169.40642 * 16 15 14 42 42 H 1.09002 * 109.46350 * 169.95862 * 17 16 15 43 43 H 1.09002 * 109.46100 * 49.99901 * 17 16 15 44 44 H 1.09001 * 109.67928 * 283.01681 * 18 13 12 45 45 H 1.09003 * 109.67866 * 43.55694 * 18 13 12 46 46 H 1.08995 * 109.45844 * 178.60383 * 19 4 2 47 47 H 1.09001 * 109.45768 * 58.62566 * 19 4 2 48 48 H 1.08995 * 109.49507 * 181.32278 * 20 19 4 49 49 H 1.08996 * 109.49561 * 301.42352 * 20 19 4 50 50 H 1.08997 * 109.58707 * 65.15365 * 21 20 19 51 51 H 1.09009 * 109.58307 * 185.57641 * 21 20 19 52 52 H 0.97000 * 119.99811 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7291 1.2444 5 1 1.6081 -1.7261 1.2904 6 7 1.6730 0.0256 2.4432 7 6 1.5556 -0.6063 3.6279 8 8 1.7595 -1.7996 3.7016 9 6 1.1720 0.1702 4.8612 10 7 1.1111 -0.7368 6.0100 11 6 0.0068 -1.3533 6.4911 12 7 0.3471 -2.0816 7.5223 13 6 1.6606 -1.9576 7.7319 14 6 2.1558 -1.1242 6.7920 15 6 3.6027 -0.7171 6.6911 16 6 4.2981 -1.0641 8.0137 17 6 3.9718 -2.5102 8.3969 18 6 2.4967 -2.6124 8.8034 19 6 3.5706 -0.8443 1.1674 20 6 3.9602 -1.6608 -0.0670 21 6 3.4653 -0.9425 -1.3264 22 7 2.0225 -0.6981 -1.1953 23 6 1.1533 -1.1135 -2.1685 24 1 0.1402 -1.3829 -1.9085 25 6 1.5742 -1.1881 -3.4892 26 7 2.6830 -0.5848 -3.8616 27 14 0.5667 -2.1450 -4.7378 28 1 -0.7952 -1.5600 -4.8278 29 1 1.2262 -2.0720 -6.0663 30 1 0.4687 -3.5641 -4.3117 31 1 -0.3633 -1.0277 0.0052 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8924 34 1 1.5104 0.9800 2.3844 35 1 1.9153 0.9450 5.0486 36 1 0.1960 0.6317 4.7111 37 1 -0.9913 -1.2591 6.0897 38 1 3.6735 0.3554 6.5095 39 1 4.0771 -1.2598 5.8734 40 1 3.9460 -0.3924 8.7965 41 1 5.3762 -0.9533 7.8975 42 1 4.6010 -2.8152 9.2331 43 1 4.1596 -3.1630 7.5444 44 1 2.3416 -2.1012 9.7536 45 1 2.2143 -3.6608 8.8998 46 1 3.9430 -1.3407 2.0635 47 1 4.0069 0.1520 1.0963 48 1 5.0446 -1.7625 -0.1085 49 1 3.5036 -2.6488 -0.0086 50 1 3.9886 0.0075 -1.4346 51 1 3.6523 -1.5667 -2.2003 52 1 2.9770 -0.6367 -4.7845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993622087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:38 Heat of formation + Delta-G solvation = 33.077620 kcal Electronic energy + Delta-G solvation = -31425.752271 eV Core-core repulsion = 27426.058507 eV Total energy + Delta-G solvation = -3999.693765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.43274 -39.86715 -37.80214 -36.78141 -34.49998 -34.26931 -32.68185 -31.80100 -30.67174 -29.50676 -29.03857 -27.72742 -26.13404 -25.05707 -23.69652 -22.59593 -22.07579 -21.12701 -20.80282 -20.31698 -19.50241 -18.97019 -17.51798 -17.21272 -16.42227 -15.70759 -15.58658 -15.37180 -14.93496 -14.81301 -14.61426 -14.05958 -13.95237 -13.86572 -13.65075 -13.62138 -13.52330 -13.30661 -12.95528 -12.66919 -12.66227 -12.44222 -12.06572 -11.80743 -11.62861 -11.21251 -11.12958 -11.08704 -11.06298 -10.98263 -10.81564 -10.67238 -10.41776 -10.32662 -10.17283 -10.11769 -9.87677 -9.82508 -9.56087 -9.34610 -8.84675 -8.52239 -8.12755 -6.74694 -5.86446 -3.31582 1.87296 2.48096 2.49134 3.07653 3.25303 3.33966 3.40048 3.42118 4.28535 4.36299 4.41650 4.51438 4.57836 4.61109 4.67680 4.70503 4.96046 5.13648 5.20145 5.27892 5.29878 5.36560 5.41955 5.44992 5.49336 5.54127 5.67515 5.68062 5.76789 5.85423 5.86313 5.96542 6.02800 6.10621 6.12510 6.21808 6.29032 6.31702 6.41543 6.49273 6.59682 6.65780 6.71746 6.74547 6.88928 6.95590 7.08105 7.31524 7.50435 7.58746 7.74873 8.05687 8.15884 8.37835 9.12883 9.75292 10.31495 11.22292 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002377 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.371868 B =11775.286580 C =12300.103255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.086 0.914 6 N -0.713 5.713 7 C 0.492 3.508 8 O -0.520 6.520 9 C 0.084 3.916 10 N -0.434 5.434 11 C 0.184 3.816 12 N -0.485 5.485 13 C -0.002 4.002 14 C -0.010 4.010 15 C -0.044 4.044 16 C -0.111 4.111 17 C -0.120 4.120 18 C -0.030 4.030 19 C -0.116 4.116 20 C -0.141 4.141 21 C 0.170 3.830 22 N -0.581 5.581 23 C -0.256 4.256 24 H 0.069 0.931 25 C 0.006 3.994 26 N -0.901 5.901 27 Si 0.902 3.098 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.283 1.283 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.020 0.980 51 H 0.087 0.913 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 4.941 21.415 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.365 5.365 7 C 0.275 3.725 8 O -0.395 6.395 9 C -0.044 4.044 10 N -0.116 5.116 11 C -0.097 4.097 12 N -0.202 5.202 13 C -0.132 4.132 14 C -0.125 4.125 15 C -0.082 4.082 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.180 4.180 21 C 0.045 3.955 22 N -0.304 5.304 23 C -0.385 4.385 24 H 0.087 0.913 25 C -0.193 4.193 26 N -0.545 5.545 27 Si 0.732 3.268 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.209 1.209 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.219 0.781 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.038 0.962 51 H 0.106 0.894 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.195 3.683 21.608 21.952 hybrid contribution -0.161 0.582 -1.506 1.622 sum 1.034 4.265 20.102 20.575 Atomic orbital electron populations 1.21816 0.95620 1.01679 1.00271 1.20550 0.93245 0.93537 0.86628 0.95480 1.21859 0.95206 0.96875 0.83458 0.89594 1.46099 1.69874 1.12338 1.08147 1.20594 0.78612 0.88574 0.84734 1.90800 1.48933 1.14594 1.85185 1.21715 1.06166 0.92231 0.84239 1.44527 1.08444 1.35959 1.22646 1.24911 0.92836 0.96704 0.95290 1.69944 1.13412 1.20891 1.15996 1.20380 0.90671 1.02052 1.00058 1.20806 0.91056 1.04330 0.96309 1.20092 0.88186 1.00674 0.99262 1.21524 0.99946 0.97193 0.96230 1.21608 0.95661 0.96790 1.01692 1.19886 0.92044 1.00105 0.94834 1.21750 0.95233 1.00062 0.98382 1.22189 0.99301 0.99728 0.96815 1.20832 0.83080 0.97191 0.94445 1.44018 1.03095 1.65113 1.18211 1.19100 0.95280 1.38132 0.86009 0.91288 1.25090 0.97883 0.99305 0.96993 1.70010 1.24183 1.43445 1.16867 0.86378 0.79579 0.80301 0.80549 1.20828 1.21598 1.20932 0.92699 0.94408 0.91614 0.76905 0.86506 0.85839 0.78063 0.91271 0.90331 0.91516 0.91045 0.91173 0.91468 0.91010 0.90674 0.93336 0.92718 0.92934 0.92520 0.96219 0.89435 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.84 37.16 0.29 -2.07 16 2 C 0.17 3.16 3.03 -67.60 -0.20 2.96 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.20 2.00 -67.81 -0.14 2.06 16 5 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 6 N -0.71 -8.74 4.59 -53.68 -0.25 -8.98 16 7 C 0.49 6.28 7.86 -10.98 -0.09 6.20 16 8 O -0.52 -9.33 16.09 5.55 0.09 -9.24 16 9 C 0.08 0.71 6.48 -5.19 -0.03 0.68 16 10 N -0.43 -5.04 2.23 -115.26 -0.26 -5.30 16 11 C 0.18 2.29 12.57 -89.92 -1.13 1.16 16 12 N -0.49 -7.16 11.25 -10.74 -0.12 -7.28 16 13 C 0.00 -0.03 6.98 -82.89 -0.58 -0.61 16 14 C -0.01 -0.12 6.72 -81.85 -0.55 -0.67 16 15 C -0.04 -0.42 6.06 -27.70 -0.17 -0.59 16 16 C -0.11 -0.87 5.91 -26.47 -0.16 -1.03 16 17 C -0.12 -1.02 5.89 -26.49 -0.16 -1.18 16 18 C -0.03 -0.32 6.30 -27.62 -0.17 -0.49 16 19 C -0.12 -1.95 5.46 -26.68 -0.15 -2.10 16 20 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 21 C 0.17 3.89 5.28 -3.71 -0.02 3.87 16 22 N -0.58 -13.64 2.99 -164.77 -0.49 -14.13 16 23 C -0.26 -6.62 8.57 -15.06 -0.13 -6.75 16 24 H 0.07 1.75 6.24 -52.49 -0.33 1.43 16 25 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 26 N -0.90 -25.21 11.23 55.49 0.62 -24.59 16 27 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 32 H 0.04 0.51 7.81 -51.93 -0.41 0.10 16 33 H 0.06 1.23 7.63 -51.93 -0.40 0.84 16 34 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 35 H 0.12 0.69 7.96 -51.93 -0.41 0.28 16 36 H 0.12 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.20 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.07 0.55 7.99 -51.92 -0.42 0.13 16 39 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.66 8.11 -51.93 -0.42 0.23 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 2.26 6.15 -51.92 -0.32 1.94 16 52 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -33.83 404.94 -11.84 -45.67 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.88 Total: 2.94 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.62 Total: -1.33 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.49 Total: -60.28 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.83 -11.84 -45.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993622087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.746 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds