Wall clock time and date at job start Wed Apr 1 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.58479 * 2 1 4 4 C 1.53196 * 109.70218 * 120.36646 * 2 1 3 5 5 H 1.09004 * 109.50949 * 54.54815 * 4 2 1 6 6 N 1.46496 * 109.48777 * 294.45162 * 4 2 1 7 7 C 1.34777 * 119.99978 * 155.17053 * 6 4 2 8 8 O 1.21286 * 120.00148 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99894 * 179.97438 * 7 6 4 10 10 N 1.46500 * 109.47245 * 179.97438 * 9 7 6 11 11 C 1.35313 * 126.49986 * 265.03059 * 10 9 7 12 12 N 1.30748 * 108.76903 * 179.97438 * 11 10 9 13 13 C 1.33584 * 109.14737 * 359.97438 * 12 11 10 14 14 C 1.35029 * 107.97574 * 359.77874 * 13 12 11 15 15 C 1.50653 * 124.44478 * 179.47802 * 14 13 12 16 16 C 1.53397 * 108.45417 * 344.17177 * 15 14 13 17 17 C 1.53115 * 109.44184 * 49.40554 * 16 15 14 18 18 C 1.50860 * 128.03163 * 180.13372 * 13 12 11 19 19 C 1.53047 * 109.31189 * 174.50535 * 4 2 1 20 20 C 1.53047 * 109.52526 * 298.61450 * 19 4 2 21 21 C 1.53194 * 109.30936 * 61.37260 * 20 19 4 22 22 N 1.46925 * 108.77629 * 305.36001 * 21 20 19 23 23 C 1.36935 * 120.63293 * 233.63379 * 22 21 20 24 24 H 1.07997 * 120.00279 * 150.15703 * 23 22 21 25 25 C 1.38820 * 119.99823 * 330.15217 * 23 22 21 26 26 N 1.31615 * 119.99827 * 344.50326 * 25 23 22 27 27 Si 1.86798 * 119.99672 * 164.50121 * 25 23 22 28 28 H 1.48499 * 109.47331 * 60.00031 * 27 25 23 29 29 H 1.48500 * 109.46947 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47173 * 299.99718 * 27 25 23 31 31 H 1.09000 * 109.46888 * 180.28882 * 1 2 3 32 32 H 1.09002 * 109.46863 * 300.28190 * 1 2 3 33 33 H 1.08991 * 109.47454 * 60.28275 * 1 2 3 34 34 H 0.96998 * 119.99888 * 335.16243 * 6 4 2 35 35 H 1.08995 * 109.47522 * 299.99935 * 9 7 6 36 36 H 1.09000 * 109.47163 * 60.00445 * 9 7 6 37 37 H 1.07998 * 125.61470 * 359.95188 * 11 10 9 38 38 H 1.09008 * 109.83953 * 224.31080 * 15 14 13 39 39 H 1.09007 * 109.49049 * 103.82511 * 15 14 13 40 40 H 1.09000 * 109.47200 * 289.41932 * 16 15 14 41 41 H 1.08994 * 109.48107 * 169.40642 * 16 15 14 42 42 H 1.09002 * 109.46350 * 169.95862 * 17 16 15 43 43 H 1.09002 * 109.46100 * 49.99901 * 17 16 15 44 44 H 1.09001 * 109.67928 * 283.01681 * 18 13 12 45 45 H 1.09003 * 109.67866 * 43.55694 * 18 13 12 46 46 H 1.08995 * 109.45844 * 178.60383 * 19 4 2 47 47 H 1.09001 * 109.45768 * 58.62566 * 19 4 2 48 48 H 1.08995 * 109.49507 * 181.32278 * 20 19 4 49 49 H 1.08996 * 109.49561 * 301.42352 * 20 19 4 50 50 H 1.08997 * 109.58707 * 65.15365 * 21 20 19 51 51 H 1.09009 * 109.58307 * 185.57641 * 21 20 19 52 52 H 0.97000 * 119.99811 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7291 1.2444 5 1 1.6081 -1.7261 1.2904 6 7 1.6730 0.0256 2.4432 7 6 1.5556 -0.6063 3.6279 8 8 1.7595 -1.7996 3.7016 9 6 1.1720 0.1702 4.8612 10 7 1.1111 -0.7368 6.0100 11 6 0.0068 -1.3533 6.4911 12 7 0.3471 -2.0816 7.5223 13 6 1.6606 -1.9576 7.7319 14 6 2.1558 -1.1242 6.7920 15 6 3.6027 -0.7171 6.6911 16 6 4.2981 -1.0641 8.0137 17 6 3.9718 -2.5102 8.3969 18 6 2.4967 -2.6124 8.8034 19 6 3.5706 -0.8443 1.1674 20 6 3.9602 -1.6608 -0.0670 21 6 3.4653 -0.9425 -1.3264 22 7 2.0225 -0.6981 -1.1953 23 6 1.1533 -1.1135 -2.1685 24 1 0.1402 -1.3829 -1.9085 25 6 1.5742 -1.1881 -3.4892 26 7 2.6830 -0.5848 -3.8616 27 14 0.5667 -2.1450 -4.7378 28 1 -0.7952 -1.5600 -4.8278 29 1 1.2262 -2.0720 -6.0663 30 1 0.4687 -3.5641 -4.3117 31 1 -0.3633 -1.0277 0.0052 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8924 34 1 1.5104 0.9800 2.3844 35 1 1.9153 0.9450 5.0486 36 1 0.1960 0.6317 4.7111 37 1 -0.9913 -1.2591 6.0897 38 1 3.6735 0.3554 6.5095 39 1 4.0771 -1.2598 5.8734 40 1 3.9460 -0.3924 8.7965 41 1 5.3762 -0.9533 7.8975 42 1 4.6010 -2.8152 9.2331 43 1 4.1596 -3.1630 7.5444 44 1 2.3416 -2.1012 9.7536 45 1 2.2143 -3.6608 8.8998 46 1 3.9430 -1.3407 2.0635 47 1 4.0069 0.1520 1.0963 48 1 5.0446 -1.7625 -0.1085 49 1 3.5036 -2.6488 -0.0086 50 1 3.9886 0.0075 -1.4346 51 1 3.6523 -1.5667 -2.2003 52 1 2.9770 -0.6367 -4.7845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993622087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:36 Heat of formation + Delta-G solvation = 13.547185 kcal Electronic energy + Delta-G solvation = -31426.599175 eV Core-core repulsion = 27426.058507 eV Total energy + Delta-G solvation = -4000.540668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.29003 -41.05136 -39.27046 -37.50992 -35.95735 -35.16994 -34.28932 -33.43883 -31.61747 -30.91438 -29.83768 -28.76881 -27.62072 -26.81912 -24.48629 -24.01316 -22.88112 -22.39551 -22.16298 -21.39721 -20.98149 -19.77648 -18.63579 -18.25118 -18.00146 -17.16067 -16.54689 -16.52481 -16.28132 -15.67313 -15.62620 -15.59600 -15.40806 -14.95976 -14.80131 -14.65911 -14.63024 -14.35756 -14.28655 -14.12981 -13.44307 -13.38566 -13.28829 -13.17620 -12.81935 -12.80376 -12.73002 -12.54940 -12.39913 -12.04925 -11.86526 -11.81733 -11.80736 -11.76419 -11.73561 -11.65299 -11.31030 -11.14622 -10.75769 -10.54169 -10.36930 -10.06693 -9.00875 -8.65989 -7.87743 -5.33678 0.97639 1.44951 1.48257 1.51101 1.53481 1.70036 2.14484 2.26005 2.52535 3.28182 3.50928 3.55964 3.70321 3.75776 3.82262 3.89737 3.99540 4.00625 4.03324 4.13868 4.18380 4.24634 4.34467 4.38488 4.50563 4.58814 4.60901 4.64168 4.72160 4.75404 4.82045 4.85903 4.91795 5.00916 5.02758 5.10424 5.11069 5.17825 5.19384 5.26903 5.27429 5.44809 5.45484 5.46724 5.49838 5.57219 5.68875 5.74352 5.87960 6.23655 6.40463 6.54576 7.14640 7.15912 7.21232 7.85573 8.36436 9.19032 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002377 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.371868 B =11775.286580 C =12300.103255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.039 0.961 4 C 0.150 3.850 5 H 0.051 0.949 6 N -0.699 5.699 7 C 0.495 3.505 8 O -0.576 6.576 9 C 0.089 3.911 10 N -0.436 5.436 11 C 0.174 3.826 12 N -0.527 5.527 13 C -0.034 4.034 14 C -0.018 4.018 15 C -0.043 4.043 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.032 4.032 19 C -0.107 4.107 20 C -0.131 4.131 21 C 0.177 3.823 22 N -0.601 5.601 23 C -0.255 4.255 24 H 0.070 0.930 25 C -0.046 4.046 26 N -0.932 5.932 27 Si 0.958 3.042 28 H -0.273 1.273 29 H -0.295 1.295 30 H -0.285 1.285 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.418 0.582 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.229 0.771 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.038 0.962 50 H 0.007 0.993 51 H 0.051 0.949 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 7.089 23.357 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.057 0.943 4 C 0.043 3.957 5 H 0.069 0.931 6 N -0.351 5.351 7 C 0.280 3.720 8 O -0.455 6.455 9 C -0.037 4.037 10 N -0.118 5.118 11 C -0.107 4.107 12 N -0.245 5.245 13 C -0.162 4.162 14 C -0.134 4.134 15 C -0.081 4.081 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.070 4.070 19 C -0.145 4.145 20 C -0.171 4.171 21 C 0.051 3.949 22 N -0.325 5.325 23 C -0.385 4.385 24 H 0.088 0.912 25 C -0.242 4.242 26 N -0.577 5.577 27 Si 0.787 3.213 28 H -0.199 1.199 29 H -0.221 1.221 30 H -0.211 1.211 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.256 0.744 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.245 0.755 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.069 0.931 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.981 5.882 23.581 24.323 hybrid contribution -0.134 -0.104 -2.059 2.066 sum 0.847 5.779 21.522 22.300 Atomic orbital electron populations 1.21739 0.94400 1.00872 1.01561 1.20736 0.94299 0.93622 0.85489 0.94340 1.21259 0.94718 0.95383 0.84383 0.93094 1.45787 1.69485 1.13091 1.06749 1.21321 0.76977 0.88026 0.85627 1.90798 1.51290 1.17357 1.86018 1.22007 1.09601 0.91287 0.80761 1.44710 1.07933 1.36130 1.23026 1.25481 0.94158 0.96129 0.94911 1.69904 1.14518 1.22373 1.17686 1.20926 0.90744 1.03040 1.01511 1.21268 0.92272 1.03894 0.95929 1.20192 0.86503 1.01803 0.99622 1.21538 1.00914 0.96492 0.95528 1.21598 0.94693 0.97326 1.01774 1.19973 0.92949 0.99292 0.94803 1.21658 0.95436 1.00420 0.97029 1.22028 1.00243 0.98634 0.96171 1.20612 0.83294 0.96147 0.94837 1.44260 1.03009 1.66008 1.19222 1.19369 0.95553 1.36954 0.86623 0.91210 1.25740 0.99077 1.00680 0.98706 1.70142 1.25743 1.45184 1.16672 0.85488 0.78616 0.78927 0.78305 1.19909 1.22093 1.21113 0.94547 0.89992 0.93364 0.74390 0.82912 0.81630 0.75500 0.88922 0.92034 0.90616 0.89146 0.88959 0.93322 0.90000 0.91854 0.92980 0.91043 0.91039 0.94282 0.97462 0.93080 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 7.84 71.98 0.56 -3.64 16 2 C 0.17 5.97 3.03 44.97 0.14 6.11 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 4.76 2.00 45.07 0.09 4.85 16 5 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 6 N -0.70 -14.74 4.59 -442.14 -2.03 -16.77 16 7 C 0.49 11.19 7.86 87.66 0.69 11.88 16 8 O -0.58 -20.09 16.09 -3.05 -0.05 -20.13 16 9 C 0.09 1.12 6.48 85.63 0.56 1.68 16 10 N -0.44 -9.05 2.23 -518.57 -1.16 -10.21 16 11 C 0.17 4.09 12.57 180.10 2.26 6.35 16 12 N -0.53 -15.44 11.25 -187.90 -2.11 -17.55 16 13 C -0.03 -0.89 6.98 41.60 0.29 -0.60 16 14 C -0.02 -0.42 6.72 41.14 0.28 -0.14 16 15 C -0.04 -0.73 6.06 29.97 0.18 -0.55 16 16 C -0.11 -1.42 5.91 30.77 0.18 -1.23 16 17 C -0.12 -1.85 5.89 30.75 0.18 -1.66 16 18 C -0.03 -0.66 6.30 30.02 0.19 -0.47 16 19 C -0.11 -3.44 5.46 30.63 0.17 -3.27 16 20 C -0.13 -4.99 6.08 30.68 0.19 -4.80 16 21 C 0.18 8.24 5.28 86.36 0.46 8.70 16 22 N -0.60 -28.41 2.99 -675.22 -2.02 -30.43 16 23 C -0.25 -13.37 8.57 84.04 0.72 -12.65 16 24 H 0.07 3.58 6.24 -2.91 -0.02 3.56 16 25 C -0.05 -2.52 4.94 84.86 0.42 -2.10 16 26 N -0.93 -53.55 11.23 21.65 0.24 -53.31 16 27 Si 0.96 44.30 29.58 68.60 2.03 46.33 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 29 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 30 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 31 H 0.04 1.31 7.43 -2.39 -0.02 1.29 16 32 H 0.08 1.92 7.81 -2.39 -0.02 1.91 16 33 H 0.05 1.75 7.63 -2.39 -0.02 1.73 16 34 H 0.42 5.50 8.60 -92.71 -0.80 4.71 16 35 H 0.15 0.92 7.96 -2.39 -0.02 0.90 16 36 H 0.17 0.76 8.13 -2.39 -0.02 0.74 16 37 H 0.23 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.09 1.11 7.99 -2.38 -0.02 1.09 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 0.94 8.11 -2.39 -0.02 0.92 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.05 2.74 6.15 -2.38 -0.01 2.73 16 52 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -78.46 404.94 2.57 -75.90 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.11 Total: 17.75 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 7.55 Total: 8.43 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -7.07 Total: -128.27 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -78.46 2.57 -75.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993622087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.443 kcal (2) G-P(sol) polarization free energy of solvation -78.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds