Wall clock time and date at job start Wed Apr 1 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47444 * 2 1 4 4 N 1.46500 * 109.47299 * 119.99871 * 2 1 3 5 5 C 1.34773 * 120.00086 * 275.00136 * 4 2 1 6 6 O 1.21286 * 120.00136 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00389 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.71033 * 60.60770 * 7 5 4 9 9 C 1.53384 * 109.76003 * 181.24667 * 7 5 4 10 10 C 1.53030 * 109.71671 * 170.23362 * 9 7 5 11 11 C 1.53373 * 109.74660 * 288.25607 * 10 9 7 12 12 C 1.50953 * 108.20732 * 50.61997 * 11 10 9 13 13 N 1.30128 * 128.28262 * 163.28341 * 12 11 10 14 14 N 1.40319 * 108.12157 * 180.27544 * 13 12 11 15 15 H 0.97000 * 126.00542 * 179.97438 * 14 13 12 16 16 C 1.35198 * 107.99029 * 0.22753 * 14 13 12 17 17 C 1.34573 * 107.61757 * 359.52968 * 16 14 13 18 18 C 1.52998 * 109.47648 * 240.00108 * 2 1 3 19 19 C 1.53033 * 109.46480 * 180.02562 * 18 2 1 20 20 C 1.53195 * 109.31456 * 178.59820 * 19 18 2 21 21 N 1.46934 * 108.76115 * 54.65731 * 20 19 18 22 22 C 1.36940 * 120.62789 * 126.40776 * 21 20 19 23 23 H 1.07992 * 120.00280 * 332.60158 * 22 21 20 24 24 C 1.38812 * 119.99316 * 152.60544 * 22 21 20 25 25 N 1.31620 * 119.99415 * 159.34034 * 24 22 21 26 26 Si 1.86794 * 120.00524 * 339.34009 * 24 22 21 27 27 H 1.48495 * 109.47276 * 92.94592 * 26 24 22 28 28 H 1.48507 * 109.47221 * 212.94681 * 26 24 22 29 29 H 1.48505 * 109.47123 * 332.94461 * 26 24 22 30 30 C 1.46922 * 118.73523 * 306.37794 * 21 20 19 31 31 C 1.53038 * 109.46200 * 59.96838 * 18 2 1 32 32 H 1.09001 * 109.47370 * 60.00100 * 1 2 3 33 33 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47500 * 300.00096 * 1 2 3 35 35 H 0.97004 * 120.00159 * 95.00020 * 4 2 1 36 36 H 1.09000 * 109.42854 * 290.30963 * 9 7 5 37 37 H 1.09003 * 109.43093 * 50.16068 * 9 7 5 38 38 H 1.09007 * 109.41840 * 48.33706 * 10 9 7 39 39 H 1.08996 * 109.42663 * 168.22468 * 10 9 7 40 40 H 1.09006 * 109.71639 * 290.94988 * 11 10 9 41 41 H 1.08990 * 109.71744 * 170.30123 * 11 10 9 42 42 H 1.08002 * 126.18585 * 179.67942 * 16 14 13 43 43 H 1.09003 * 109.45630 * 299.99725 * 18 2 1 44 44 H 1.09005 * 109.49960 * 298.56265 * 19 18 2 45 45 H 1.09002 * 109.49744 * 58.66095 * 19 18 2 46 46 H 1.08990 * 109.59789 * 294.86924 * 20 19 18 47 47 H 1.08998 * 109.70074 * 174.50157 * 20 19 18 48 48 H 0.97002 * 120.00359 * 179.97438 * 25 24 22 49 49 H 1.08994 * 109.58871 * 293.82813 * 30 21 20 50 50 H 1.09004 * 109.69966 * 173.46754 * 30 21 20 51 51 H 1.09000 * 109.49916 * 301.34480 * 31 18 2 52 52 H 1.09006 * 109.49735 * 61.40463 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6489 -0.7287 3.5878 8 1 3.6524 -1.1136 3.4065 9 6 2.6737 0.2435 4.7739 10 6 2.9471 -0.5271 6.0674 11 6 1.7135 -1.3554 6.4477 12 6 1.2893 -2.1525 5.2380 13 7 0.4993 -3.1853 5.1896 14 7 0.4010 -3.5973 3.8518 15 1 -0.1220 -4.3449 3.5224 16 6 1.1677 -2.7726 3.1036 17 6 1.7211 -1.8678 3.9319 18 6 2.0401 -0.7212 -1.2492 19 6 3.5704 -0.7216 -1.2486 20 6 4.0774 -1.4748 -2.4825 21 7 3.4748 -0.8769 -3.6818 22 6 4.2608 -0.4514 -4.7193 23 1 5.2759 -0.1339 -4.5328 24 6 3.7524 -0.4283 -6.0108 25 7 4.3154 0.3319 -6.9260 26 14 2.2695 -1.4758 -6.4499 27 1 1.0303 -0.6752 -6.2809 28 1 2.3805 -1.9241 -7.8614 29 1 2.2188 -2.6611 -5.5567 30 6 2.0130 -0.7448 -3.7469 31 6 1.5292 -0.0001 -2.4986 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6318 1.1527 36 1 3.4590 0.9835 4.6198 37 1 1.7105 0.7483 4.8493 38 1 3.7986 -1.1916 5.9204 39 1 3.1709 0.1772 6.8686 40 1 0.9045 -0.6915 6.7527 41 1 1.9626 -2.0320 7.2651 42 1 1.3084 -2.8284 2.0342 43 1 1.6767 -1.7489 -1.2490 44 1 3.9345 0.3055 -1.2741 45 1 3.9337 -1.2147 -0.3469 46 1 3.7905 -2.5240 -2.4138 47 1 5.1629 -1.3958 -2.5409 48 1 3.9605 0.3479 -7.8287 49 1 1.5578 -1.7345 -3.7812 50 1 1.7341 -0.1831 -4.6385 51 1 0.4395 0.0206 -2.4868 52 1 1.9123 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997083246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:05 Heat of formation + Delta-G solvation = 44.937678 kcal Electronic energy + Delta-G solvation = -31568.770222 eV Core-core repulsion = 27569.590748 eV Total energy + Delta-G solvation = -3999.179474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.98164 -39.99078 -38.32934 -36.64231 -35.46916 -33.29923 -32.46756 -31.44580 -30.78223 -30.39359 -29.25373 -28.91913 -25.69499 -25.16988 -23.20031 -22.71666 -22.07625 -21.79482 -20.64177 -20.51508 -19.40899 -19.13510 -18.02620 -17.16664 -16.69580 -16.21041 -15.71137 -15.43962 -15.11811 -14.92094 -14.44516 -14.20671 -14.04122 -13.93781 -13.77951 -13.61753 -13.39383 -13.12125 -13.01032 -12.77749 -12.67003 -12.41971 -12.26085 -12.02311 -11.87591 -11.58097 -11.38589 -11.34723 -11.25133 -11.15718 -10.84105 -10.75255 -10.51556 -10.48840 -10.14415 -9.97249 -9.85835 -9.74554 -9.67790 -9.42842 -9.04939 -8.78621 -8.62739 -6.98546 -5.95876 -3.31406 1.52132 2.26072 2.45544 2.69250 3.14355 3.29668 3.45934 3.48461 4.06193 4.33918 4.46434 4.51343 4.54272 4.66149 4.80470 4.93379 4.96493 5.04551 5.10484 5.12677 5.18251 5.18790 5.24953 5.38989 5.43733 5.45060 5.55823 5.59032 5.68978 5.70189 5.77636 5.79654 5.84203 5.84690 6.02983 6.05047 6.09993 6.11897 6.18206 6.24562 6.28999 6.38002 6.49001 6.52528 6.62953 6.64916 6.69668 6.90073 6.95761 7.30582 7.43980 7.95783 8.18522 8.32196 8.93622 9.71346 10.09244 11.20264 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.002469 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.394195 B =11338.923090 C =11726.258024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.089 0.911 4 N -0.723 5.723 5 C 0.523 3.477 6 O -0.536 6.536 7 C -0.028 4.028 8 H 0.103 0.897 9 C -0.099 4.099 10 C -0.115 4.115 11 C -0.041 4.041 12 C 0.092 3.908 13 N -0.288 5.288 14 N -0.480 5.480 15 H 0.441 0.559 16 C 0.069 3.931 17 C -0.231 4.231 18 C -0.085 4.085 19 C -0.128 4.128 20 C 0.149 3.851 21 N -0.606 5.606 22 C -0.259 4.259 23 H 0.085 0.915 24 C 0.022 3.978 25 N -0.909 5.909 26 Si 0.884 3.116 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.272 1.272 30 C 0.126 3.874 31 C -0.127 4.127 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.174 0.826 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.019 0.981 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.023 0.977 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -6.315 25.618 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.107 0.893 4 N -0.375 5.375 5 C 0.309 3.691 6 O -0.413 6.413 7 C -0.050 4.050 8 H 0.121 0.879 9 C -0.137 4.137 10 C -0.153 4.153 11 C -0.080 4.080 12 C -0.077 4.077 13 N -0.110 5.110 14 N -0.188 5.188 15 H 0.285 0.715 16 C -0.078 4.078 17 C -0.243 4.243 18 C -0.104 4.104 19 C -0.167 4.167 20 C 0.023 3.977 21 N -0.329 5.329 22 C -0.387 4.387 23 H 0.102 0.898 24 C -0.177 4.177 25 N -0.552 5.552 26 Si 0.714 3.286 27 H -0.217 1.217 28 H -0.232 1.232 29 H -0.197 1.197 30 C 0.001 3.999 31 C -0.167 4.167 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.229 0.771 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.191 0.809 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.091 0.909 51 H 0.076 0.924 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.404 -6.203 26.118 27.846 hybrid contribution -0.617 -1.049 -1.366 1.830 sum -8.022 -7.252 24.752 27.011 Atomic orbital electron populations 1.22199 0.95642 1.01699 1.02466 1.21122 0.93593 0.97808 0.83468 0.89307 1.46267 1.67528 1.13739 1.09932 1.20489 0.77210 0.87162 0.84215 1.90699 1.49649 1.15967 1.84946 1.19764 0.98293 0.93245 0.93695 0.87886 1.21395 1.03813 0.96663 0.91828 1.21595 0.97181 0.98841 0.97730 1.20185 0.98398 0.96845 0.92586 1.22338 0.95312 0.94179 0.95878 1.77034 1.22057 1.15737 0.96163 1.46312 1.39793 1.27774 1.04957 0.71498 1.22132 0.95125 0.92509 0.98009 1.19659 1.09318 1.02193 0.93092 1.21326 0.96661 0.99107 0.93309 1.22044 0.94218 1.01901 0.98506 1.20911 0.97242 0.93694 0.85860 1.44350 1.00950 1.70570 1.17073 1.18926 0.97856 1.37007 0.84941 0.89762 1.25285 0.97964 0.98771 0.95646 1.69841 1.42910 1.38541 1.03865 0.86938 0.82886 0.82175 0.76575 1.21650 1.23236 1.19687 1.21317 0.85123 0.96955 0.96517 1.22089 0.99126 1.00496 0.94977 0.91078 0.92949 0.92569 0.77114 0.90639 0.90613 0.91298 0.90483 0.89639 0.89842 0.80931 0.91564 0.91760 0.92927 0.96283 0.91964 0.92786 0.95939 0.90939 0.92374 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.13 37.15 0.34 -1.52 16 2 C 0.14 1.76 2.16 -67.93 -0.15 1.62 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -7.36 3.78 -53.81 -0.20 -7.57 16 5 C 0.52 6.08 7.05 -10.99 -0.08 6.01 16 6 O -0.54 -8.30 15.52 5.55 0.09 -8.22 16 7 C -0.03 -0.25 2.90 -92.63 -0.27 -0.52 16 8 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 9 C -0.10 -0.84 4.61 -26.52 -0.12 -0.96 16 10 C -0.12 -0.72 5.86 -26.52 -0.16 -0.87 16 11 C -0.04 -0.29 6.31 -27.57 -0.17 -0.46 16 12 C 0.09 0.88 7.10 -82.35 -0.58 0.30 16 13 N -0.29 -3.01 12.68 33.75 0.43 -2.58 16 14 N -0.48 -3.84 7.37 30.35 0.22 -3.62 16 15 H 0.44 2.21 8.96 -182.43 -1.64 0.58 16 16 C 0.07 0.54 10.99 -17.37 -0.19 0.35 16 17 C -0.23 -2.09 5.41 -104.98 -0.57 -2.66 16 18 C -0.08 -1.15 1.79 -90.58 -0.16 -1.31 16 19 C -0.13 -1.90 5.22 -26.61 -0.14 -2.04 16 20 C 0.15 2.76 6.52 -3.70 -0.02 2.73 16 21 N -0.61 -13.92 2.77 -172.32 -0.48 -14.40 16 22 C -0.26 -7.15 10.04 -15.06 -0.15 -7.30 16 23 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 24 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 25 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 26 Si 0.88 22.12 24.35 -169.99 -4.14 17.98 16 27 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 28 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 29 H -0.27 -6.64 6.64 56.52 0.38 -6.27 16 30 C 0.13 2.64 4.20 -3.71 -0.02 2.63 16 31 C -0.13 -2.09 5.04 -26.61 -0.13 -2.23 16 32 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 3.10 6.05 -40.82 -0.25 2.85 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 38 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.17 0.97 5.94 -52.49 -0.31 0.65 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.64 7.41 -51.93 -0.38 0.25 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.02 0.46 7.07 -51.93 -0.37 0.10 16 50 H 0.07 1.69 4.50 -51.93 -0.23 1.46 16 51 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 52 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -34.48 390.36 -9.82 -44.30 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -9.73 Total: 0.89 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.67 Total: -5.70 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.75 Total: -55.14 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.48 -9.82 -44.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997083246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.239 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds