Wall clock time and date at job start Wed Apr 1 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47444 * 2 1 4 4 N 1.46500 * 109.47299 * 119.99871 * 2 1 3 5 5 C 1.34773 * 120.00086 * 275.00136 * 4 2 1 6 6 O 1.21286 * 120.00136 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00389 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.71033 * 60.60770 * 7 5 4 9 9 C 1.53384 * 109.76003 * 181.24667 * 7 5 4 10 10 C 1.53030 * 109.71671 * 170.23362 * 9 7 5 11 11 C 1.53373 * 109.74660 * 288.25607 * 10 9 7 12 12 C 1.50953 * 108.20732 * 50.61997 * 11 10 9 13 13 N 1.30128 * 128.28262 * 163.28341 * 12 11 10 14 14 N 1.40319 * 108.12157 * 180.27544 * 13 12 11 15 15 H 0.97000 * 126.00542 * 179.97438 * 14 13 12 16 16 C 1.35198 * 107.99029 * 0.22753 * 14 13 12 17 17 C 1.34573 * 107.61757 * 359.52968 * 16 14 13 18 18 C 1.52998 * 109.47648 * 240.00108 * 2 1 3 19 19 C 1.53033 * 109.46480 * 180.02562 * 18 2 1 20 20 C 1.53195 * 109.31456 * 178.59820 * 19 18 2 21 21 N 1.46934 * 108.76115 * 54.65731 * 20 19 18 22 22 C 1.36940 * 120.62789 * 126.40776 * 21 20 19 23 23 H 1.07992 * 120.00280 * 332.60158 * 22 21 20 24 24 C 1.38812 * 119.99316 * 152.60544 * 22 21 20 25 25 N 1.31620 * 119.99415 * 159.34034 * 24 22 21 26 26 Si 1.86794 * 120.00524 * 339.34009 * 24 22 21 27 27 H 1.48495 * 109.47276 * 92.94592 * 26 24 22 28 28 H 1.48507 * 109.47221 * 212.94681 * 26 24 22 29 29 H 1.48505 * 109.47123 * 332.94461 * 26 24 22 30 30 C 1.46922 * 118.73523 * 306.37794 * 21 20 19 31 31 C 1.53038 * 109.46200 * 59.96838 * 18 2 1 32 32 H 1.09001 * 109.47370 * 60.00100 * 1 2 3 33 33 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47500 * 300.00096 * 1 2 3 35 35 H 0.97004 * 120.00159 * 95.00020 * 4 2 1 36 36 H 1.09000 * 109.42854 * 290.30963 * 9 7 5 37 37 H 1.09003 * 109.43093 * 50.16068 * 9 7 5 38 38 H 1.09007 * 109.41840 * 48.33706 * 10 9 7 39 39 H 1.08996 * 109.42663 * 168.22468 * 10 9 7 40 40 H 1.09006 * 109.71639 * 290.94988 * 11 10 9 41 41 H 1.08990 * 109.71744 * 170.30123 * 11 10 9 42 42 H 1.08002 * 126.18585 * 179.67942 * 16 14 13 43 43 H 1.09003 * 109.45630 * 299.99725 * 18 2 1 44 44 H 1.09005 * 109.49960 * 298.56265 * 19 18 2 45 45 H 1.09002 * 109.49744 * 58.66095 * 19 18 2 46 46 H 1.08990 * 109.59789 * 294.86924 * 20 19 18 47 47 H 1.08998 * 109.70074 * 174.50157 * 20 19 18 48 48 H 0.97002 * 120.00359 * 179.97438 * 25 24 22 49 49 H 1.08994 * 109.58871 * 293.82813 * 30 21 20 50 50 H 1.09004 * 109.69966 * 173.46754 * 30 21 20 51 51 H 1.09000 * 109.49916 * 301.34480 * 31 18 2 52 52 H 1.09006 * 109.49735 * 61.40463 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6489 -0.7287 3.5878 8 1 3.6524 -1.1136 3.4065 9 6 2.6737 0.2435 4.7739 10 6 2.9471 -0.5271 6.0674 11 6 1.7135 -1.3554 6.4477 12 6 1.2893 -2.1525 5.2380 13 7 0.4993 -3.1853 5.1896 14 7 0.4010 -3.5973 3.8518 15 1 -0.1220 -4.3449 3.5224 16 6 1.1677 -2.7726 3.1036 17 6 1.7211 -1.8678 3.9319 18 6 2.0401 -0.7212 -1.2492 19 6 3.5704 -0.7216 -1.2486 20 6 4.0774 -1.4748 -2.4825 21 7 3.4748 -0.8769 -3.6818 22 6 4.2608 -0.4514 -4.7193 23 1 5.2759 -0.1339 -4.5328 24 6 3.7524 -0.4283 -6.0108 25 7 4.3154 0.3319 -6.9260 26 14 2.2695 -1.4758 -6.4499 27 1 1.0303 -0.6752 -6.2809 28 1 2.3805 -1.9241 -7.8614 29 1 2.2188 -2.6611 -5.5567 30 6 2.0130 -0.7448 -3.7469 31 6 1.5292 -0.0001 -2.4986 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6318 1.1527 36 1 3.4590 0.9835 4.6198 37 1 1.7105 0.7483 4.8493 38 1 3.7986 -1.1916 5.9204 39 1 3.1709 0.1772 6.8686 40 1 0.9045 -0.6915 6.7527 41 1 1.9626 -2.0320 7.2651 42 1 1.3084 -2.8284 2.0342 43 1 1.6767 -1.7489 -1.2490 44 1 3.9345 0.3055 -1.2741 45 1 3.9337 -1.2147 -0.3469 46 1 3.7905 -2.5240 -2.4138 47 1 5.1629 -1.3958 -2.5409 48 1 3.9605 0.3479 -7.8287 49 1 1.5578 -1.7345 -3.7812 50 1 1.7341 -0.1831 -4.6385 51 1 0.4395 0.0206 -2.4868 52 1 1.9123 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997083246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:04 Heat of formation + Delta-G solvation = 21.631088 kcal Electronic energy + Delta-G solvation = -31569.780872 eV Core-core repulsion = 27569.590748 eV Total energy + Delta-G solvation = -4000.190124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.62286 -40.94857 -39.60766 -37.42192 -36.68586 -34.61311 -33.68214 -32.69574 -31.94390 -31.50435 -30.39414 -29.57223 -27.15839 -26.02911 -24.47776 -24.21479 -22.96464 -22.52938 -21.64924 -21.55996 -20.70486 -19.74303 -18.85396 -18.60112 -17.89177 -17.39697 -16.86287 -16.42482 -15.99426 -15.90562 -15.67179 -15.36673 -15.23125 -15.09342 -14.80906 -14.70618 -14.42076 -14.27721 -14.25973 -13.87050 -13.69292 -13.53748 -13.43537 -13.27154 -12.92417 -12.71352 -12.57453 -12.42760 -12.18478 -12.16135 -12.01274 -11.98255 -11.71089 -11.62461 -11.49691 -11.42435 -11.26108 -11.14651 -10.79154 -10.61545 -10.37200 -10.00516 -9.43297 -8.89353 -8.15092 -5.46067 0.91634 1.31156 1.41993 1.51637 1.55427 1.80375 1.96816 2.30706 2.43351 3.07721 3.39676 3.45689 3.67438 3.76523 3.82563 3.91553 3.93027 4.00770 4.13563 4.35765 4.38816 4.41083 4.43895 4.52353 4.53427 4.54160 4.59768 4.61026 4.69576 4.73630 4.84261 4.88039 4.89435 5.01346 5.03033 5.05209 5.11674 5.14350 5.17614 5.21367 5.23103 5.26333 5.31390 5.38940 5.48786 5.54837 5.64205 5.66984 5.89251 6.14370 6.41550 6.61451 6.69503 6.95586 7.33203 7.66343 8.05699 9.05185 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.002469 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.394195 B =11338.923090 C =11726.258024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.059 0.941 4 N -0.710 5.710 5 C 0.522 3.478 6 O -0.580 6.580 7 C -0.019 4.019 8 H 0.123 0.877 9 C -0.099 4.099 10 C -0.106 4.106 11 C -0.043 4.043 12 C 0.081 3.919 13 N -0.321 5.321 14 N -0.475 5.475 15 H 0.452 0.548 16 C 0.077 3.923 17 C -0.248 4.248 18 C -0.074 4.074 19 C -0.117 4.117 20 C 0.143 3.857 21 N -0.622 5.622 22 C -0.247 4.247 23 H 0.046 0.954 24 C -0.041 4.041 25 N -0.961 5.961 26 Si 0.952 3.048 27 H -0.275 1.275 28 H -0.315 1.315 29 H -0.255 1.255 30 C 0.120 3.880 31 C -0.121 4.121 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.409 0.591 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.199 0.801 43 H 0.095 0.905 44 H 0.037 0.963 45 H 0.089 0.911 46 H 0.044 0.956 47 H 0.048 0.952 48 H 0.260 0.740 49 H 0.040 0.960 50 H 0.044 0.956 51 H 0.086 0.914 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -8.869 27.685 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.078 0.922 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.459 6.459 7 C -0.042 4.042 8 H 0.141 0.859 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.082 4.082 12 C -0.088 4.088 13 N -0.143 5.143 14 N -0.184 5.184 15 H 0.299 0.701 16 C -0.070 4.070 17 C -0.260 4.260 18 C -0.093 4.093 19 C -0.156 4.156 20 C 0.018 3.982 21 N -0.347 5.347 22 C -0.377 4.377 23 H 0.064 0.936 24 C -0.235 4.235 25 N -0.608 5.608 26 Si 0.781 3.219 27 H -0.201 1.201 28 H -0.244 1.244 29 H -0.179 1.179 30 C -0.005 4.005 31 C -0.160 4.160 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.216 0.784 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.105 0.895 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.976 -8.818 28.244 30.920 hybrid contribution -0.070 -0.211 -1.957 1.970 sum -9.046 -9.029 26.287 29.230 Atomic orbital electron populations 1.22144 0.94568 1.02960 1.01810 1.20814 0.94252 0.96312 0.83601 0.92225 1.46099 1.66920 1.14333 1.08918 1.20989 0.76313 0.86668 0.85055 1.90689 1.51540 1.18048 1.85635 1.19737 0.99109 0.93027 0.92286 0.85891 1.21384 1.02508 0.96798 0.93039 1.21552 0.97023 0.98894 0.96948 1.20285 0.98701 0.96910 0.92287 1.22727 0.95017 0.94103 0.96907 1.76987 1.23086 1.16648 0.97627 1.46361 1.39672 1.28048 1.04339 0.70120 1.22496 0.94006 0.91604 0.98930 1.19742 1.10231 1.02741 0.93306 1.21227 0.95400 1.00319 0.92360 1.21920 0.95310 1.00198 0.98157 1.21126 0.96576 0.95117 0.85356 1.44504 1.01788 1.71258 1.17119 1.18863 0.96935 1.35430 0.86486 0.93599 1.25970 1.01752 1.00173 0.95647 1.69990 1.45679 1.40834 1.04280 0.85829 0.79780 0.80704 0.75620 1.20150 1.24421 1.17875 1.21404 0.83789 0.97838 0.97472 1.21983 1.00809 0.98912 0.94333 0.91117 0.90641 0.93931 0.75250 0.90938 0.92805 0.90437 0.88884 0.89667 0.88777 0.78446 0.88680 0.94368 0.89279 0.93849 0.93366 0.93087 0.94208 0.93822 0.89526 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.13 71.98 0.66 -2.43 16 2 C 0.16 3.36 2.16 44.99 0.10 3.46 16 3 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 4 N -0.71 -12.09 3.78 -442.54 -1.67 -13.76 16 5 C 0.52 11.12 7.05 87.66 0.62 11.73 16 6 O -0.58 -17.67 15.52 -3.05 -0.05 -17.72 16 7 C -0.02 -0.30 2.90 -12.10 -0.04 -0.34 16 8 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 9 C -0.10 -1.56 4.61 30.73 0.14 -1.42 16 10 C -0.11 -1.11 5.86 30.73 0.18 -0.93 16 11 C -0.04 -0.54 6.31 30.05 0.19 -0.35 16 12 C 0.08 1.40 7.10 43.44 0.31 1.71 16 13 N -0.32 -6.13 12.68 -47.14 -0.60 -6.73 16 14 N -0.48 -6.29 7.37 -57.88 -0.43 -6.72 16 15 H 0.45 3.27 8.96 -213.18 -1.91 1.36 16 16 C 0.08 0.94 10.99 83.33 0.92 1.86 16 17 C -0.25 -3.86 5.41 -20.10 -0.11 -3.97 16 18 C -0.07 -1.74 1.79 -10.77 -0.02 -1.76 16 19 C -0.12 -3.16 5.22 30.67 0.16 -3.00 16 20 C 0.14 4.99 6.52 86.36 0.56 5.55 16 21 N -0.62 -28.04 2.77 -699.11 -1.94 -29.98 16 22 C -0.25 -13.98 10.04 84.03 0.84 -13.14 16 23 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 24 C -0.04 -2.41 5.23 84.86 0.44 -1.97 16 25 N -0.96 -60.97 13.97 21.65 0.30 -60.67 16 26 Si 0.95 45.90 24.35 68.60 1.67 47.57 16 27 H -0.27 -12.49 6.62 99.48 0.66 -11.83 16 28 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 29 H -0.25 -11.42 6.64 99.48 0.66 -10.76 16 30 C 0.12 4.73 4.20 86.36 0.36 5.09 16 31 C -0.12 -3.68 5.04 30.67 0.15 -3.52 16 32 H 0.07 1.40 6.40 -2.39 -0.02 1.39 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.41 4.42 6.05 -92.71 -0.56 3.86 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.08 7.77 -2.39 -0.02 1.06 16 38 H 0.08 0.70 8.10 -2.38 -0.02 0.68 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.20 1.21 5.94 -2.91 -0.02 1.20 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.09 1.78 7.41 -2.39 -0.02 1.77 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 48 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 49 H 0.04 1.46 7.07 -2.39 -0.02 1.44 16 50 H 0.04 1.98 4.50 -2.38 -0.01 1.97 16 51 H 0.09 2.16 6.36 -2.39 -0.02 2.15 16 52 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -78.82 390.36 1.14 -77.67 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -1.62 Total: 13.74 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.47 Total: -3.42 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -4.33 Total: -117.85 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.05 Total: -17.72 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -78.82 1.14 -77.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997083246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.306 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds