Wall clock time and date at job start Wed Apr 1 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47360 * 2 1 4 4 N 1.46503 * 109.46990 * 119.99583 * 2 1 3 5 5 C 1.34769 * 120.00013 * 275.00151 * 4 2 1 6 6 O 1.21286 * 119.99993 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00062 * 180.02562 * 5 4 2 8 8 H 1.08995 * 109.74841 * 299.36612 * 7 5 4 9 9 C 1.53384 * 109.71758 * 178.73707 * 7 5 4 10 10 C 1.53032 * 109.72421 * 189.77378 * 9 7 5 11 11 C 1.53365 * 109.75367 * 71.70752 * 10 9 7 12 12 C 1.50947 * 108.20828 * 309.34322 * 11 10 9 13 13 N 1.30124 * 128.29433 * 196.78356 * 12 11 10 14 14 N 1.40305 * 108.13121 * 179.82381 * 13 12 11 15 15 H 0.97003 * 126.00812 * 180.02562 * 14 13 12 16 16 C 1.35204 * 107.99255 * 0.25645 * 14 13 12 17 17 C 1.34576 * 107.61360 * 359.67655 * 16 14 13 18 18 C 1.52999 * 109.47328 * 239.99571 * 2 1 3 19 19 C 1.53039 * 109.46223 * 180.02562 * 18 2 1 20 20 C 1.53191 * 109.31353 * 178.60368 * 19 18 2 21 21 N 1.46925 * 108.76707 * 54.65266 * 20 19 18 22 22 C 1.36940 * 120.62913 * 126.40805 * 21 20 19 23 23 H 1.07994 * 119.99859 * 332.60395 * 22 21 20 24 24 C 1.38808 * 119.99923 * 152.60489 * 22 21 20 25 25 N 1.31621 * 120.00230 * 159.35694 * 24 22 21 26 26 Si 1.86801 * 120.00173 * 339.36394 * 24 22 21 27 27 H 1.48494 * 109.47423 * 92.90567 * 26 24 22 28 28 H 1.48504 * 109.47125 * 212.91021 * 26 24 22 29 29 H 1.48504 * 109.46911 * 332.90901 * 26 24 22 30 30 C 1.46925 * 118.73963 * 306.38554 * 21 20 19 31 31 C 1.53042 * 109.46038 * 59.97275 * 18 2 1 32 32 H 1.08995 * 109.46685 * 60.00808 * 1 2 3 33 33 H 1.09002 * 109.46684 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47150 * 300.00400 * 1 2 3 35 35 H 0.96998 * 119.99566 * 95.00233 * 4 2 1 36 36 H 1.09002 * 109.43198 * 309.84754 * 9 7 5 37 37 H 1.08998 * 109.43340 * 69.74444 * 9 7 5 38 38 H 1.08998 * 109.42027 * 191.79854 * 10 9 7 39 39 H 1.09000 * 109.41891 * 311.62041 * 10 9 7 40 40 H 1.09002 * 109.71612 * 69.01937 * 11 10 9 41 41 H 1.09000 * 109.71421 * 189.62011 * 11 10 9 42 42 H 1.07998 * 126.19357 * 179.78717 * 16 14 13 43 43 H 1.09004 * 109.46149 * 299.99912 * 18 2 1 44 44 H 1.09006 * 109.49666 * 298.56517 * 19 18 2 45 45 H 1.08999 * 109.49682 * 58.66214 * 19 18 2 46 46 H 1.09002 * 109.59673 * 294.86626 * 20 19 18 47 47 H 1.09007 * 109.70079 * 174.50676 * 20 19 18 48 48 H 0.96999 * 120.00477 * 179.97438 * 25 24 22 49 49 H 1.09005 * 109.58517 * 293.82428 * 30 21 20 50 50 H 1.09002 * 109.58636 * 173.39548 * 30 21 20 51 51 H 1.08997 * 109.49698 * 301.33532 * 31 18 2 52 52 H 1.08999 * 109.49538 * 61.43702 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6499 -0.7283 3.5875 8 1 1.9746 -1.5448 3.8433 9 6 2.7334 0.2599 4.7576 10 6 3.4671 -0.3913 5.9322 11 6 4.9597 -0.5195 5.6041 12 6 5.0906 -1.1762 4.2513 13 7 6.1401 -1.7382 3.7259 14 7 5.7893 -2.2149 2.4538 15 1 6.3768 -2.6782 1.8364 16 6 4.4899 -1.9104 2.2374 17 6 4.0334 -1.2730 3.3312 18 6 2.0401 -0.7213 -1.2492 19 6 3.5704 -0.7217 -1.2486 20 6 4.0774 -1.4749 -2.4825 21 7 3.4748 -0.8772 -3.6818 22 6 4.2607 -0.4518 -4.7194 23 1 5.2759 -0.1342 -4.5328 24 6 3.7525 -0.4288 -6.0108 25 7 4.3156 0.3310 -6.9263 26 14 2.2692 -1.4760 -6.4497 27 1 1.0302 -0.6753 -6.2800 28 1 2.3797 -1.9239 -7.8613 29 1 2.2186 -2.6615 -5.5567 30 6 2.0130 -0.7450 -3.7469 31 6 1.5292 -0.0002 -2.4986 32 1 -0.3632 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 2.2490 -1.6317 1.1527 36 1 3.2750 1.1514 4.4413 37 1 1.7269 0.5387 5.0694 38 1 3.3432 0.2244 6.8231 39 1 3.0500 -1.3814 6.1160 40 1 5.4169 0.4697 5.5784 41 1 5.4511 -1.1320 6.3601 42 1 3.9208 -2.1390 1.3484 43 1 1.6767 -1.7490 -1.2489 44 1 3.9345 0.3054 -1.2741 45 1 3.9338 -1.2147 -0.3469 46 1 3.7905 -2.5243 -2.4137 47 1 5.1630 -1.3960 -2.5409 48 1 3.9607 0.3469 -7.8289 49 1 1.5577 -1.7348 -3.7811 50 1 1.7363 -0.1821 -4.6384 51 1 0.4395 0.0204 -2.4869 52 1 1.9128 1.0200 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997083249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:10 Heat of formation + Delta-G solvation = 45.106803 kcal Electronic energy + Delta-G solvation = -31924.666768 eV Core-core repulsion = 27925.494628 eV Total energy + Delta-G solvation = -3999.172140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.90285 -39.97303 -38.35541 -36.60163 -35.47189 -33.26747 -32.48948 -31.41465 -30.73559 -30.43589 -29.21538 -28.87794 -25.70961 -25.13406 -23.19194 -22.77087 -22.04477 -21.73596 -20.61134 -20.50380 -19.46271 -19.07122 -17.95239 -17.18453 -16.72168 -16.12244 -15.62113 -15.49359 -15.10294 -14.87266 -14.42340 -14.23157 -14.06010 -13.97212 -13.80148 -13.57132 -13.27884 -13.17411 -12.95166 -12.79618 -12.67550 -12.37263 -12.27946 -12.03859 -11.87156 -11.50203 -11.38228 -11.32565 -11.26390 -11.12958 -10.86652 -10.69437 -10.54619 -10.50767 -10.16556 -9.96942 -9.87881 -9.69674 -9.64152 -9.44883 -9.05583 -8.70802 -8.64090 -7.01240 -5.97858 -3.33871 1.63176 2.32868 2.55980 2.72966 3.15383 3.28529 3.44724 3.47166 4.12722 4.40348 4.49512 4.49708 4.56803 4.69879 4.78726 4.91650 4.98650 5.06991 5.11139 5.15350 5.19295 5.19916 5.32439 5.37077 5.44199 5.49765 5.55773 5.62320 5.68115 5.73357 5.77356 5.81499 5.83069 5.86409 6.01210 6.03017 6.10612 6.12398 6.14657 6.24399 6.33440 6.35520 6.46314 6.51682 6.58064 6.62362 6.66773 6.92707 7.02040 7.41251 7.44351 7.93188 8.18953 8.29834 8.91057 9.69004 10.06532 11.18206 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.002873 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.007014 B = 9745.091825 C =10845.586710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.088 0.912 4 N -0.723 5.723 5 C 0.523 3.477 6 O -0.536 6.536 7 C -0.026 4.026 8 H 0.101 0.899 9 C -0.099 4.099 10 C -0.115 4.115 11 C -0.041 4.041 12 C 0.090 3.910 13 N -0.286 5.286 14 N -0.477 5.477 15 H 0.443 0.557 16 C 0.071 3.929 17 C -0.236 4.236 18 C -0.086 4.086 19 C -0.127 4.127 20 C 0.149 3.851 21 N -0.605 5.605 22 C -0.261 4.261 23 H 0.084 0.916 24 C 0.023 3.977 25 N -0.908 5.908 26 Si 0.884 3.116 27 H -0.288 1.288 28 H -0.304 1.304 29 H -0.272 1.272 30 C 0.126 3.874 31 C -0.127 4.127 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.393 0.607 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.175 0.825 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.019 0.981 47 H 0.061 0.939 48 H 0.263 0.737 49 H 0.024 0.976 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 -5.907 25.020 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.106 0.894 4 N -0.375 5.375 5 C 0.309 3.691 6 O -0.413 6.413 7 C -0.048 4.048 8 H 0.119 0.881 9 C -0.137 4.137 10 C -0.153 4.153 11 C -0.080 4.080 12 C -0.078 4.078 13 N -0.109 5.109 14 N -0.184 5.184 15 H 0.287 0.713 16 C -0.076 4.076 17 C -0.248 4.248 18 C -0.105 4.105 19 C -0.166 4.166 20 C 0.023 3.977 21 N -0.329 5.329 22 C -0.389 4.389 23 H 0.102 0.898 24 C -0.176 4.176 25 N -0.551 5.551 26 Si 0.714 3.286 27 H -0.216 1.216 28 H -0.232 1.232 29 H -0.197 1.197 30 C 0.001 3.999 31 C -0.167 4.167 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.229 0.771 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.192 0.808 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.042 0.958 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.759 -5.299 25.014 25.844 hybrid contribution -1.261 -1.180 -1.198 2.102 sum -5.020 -6.479 23.816 25.187 Atomic orbital electron populations 1.22208 0.95512 1.01886 1.02486 1.21124 0.93744 0.97726 0.83425 0.89380 1.46271 1.67567 1.13703 1.09980 1.20515 0.76952 0.87270 0.84384 1.90697 1.49908 1.15788 1.84874 1.19738 0.92812 0.98373 0.93881 0.88135 1.21397 1.01584 0.97832 0.92884 1.21583 0.93851 1.01608 0.98224 1.20167 0.97602 1.00210 0.90016 1.22302 0.90402 0.97737 0.97398 1.77030 1.22517 1.18077 0.93229 1.46333 1.09419 1.47894 1.14789 0.71280 1.22207 0.86707 0.99070 0.99613 1.19626 0.97020 1.11884 0.96263 1.21338 0.96434 0.99287 0.93439 1.22083 0.94448 1.01929 0.98160 1.20908 0.97155 0.93691 0.85972 1.44330 1.00988 1.70556 1.16993 1.18913 0.97856 1.37165 0.84955 0.89828 1.25282 0.97982 0.98711 0.95623 1.69840 1.42905 1.38487 1.03876 0.86936 0.82872 0.82148 0.76594 1.21589 1.23214 1.19662 1.21337 0.85044 0.97010 0.96557 1.22087 0.99228 1.00464 0.94894 0.91103 0.92708 0.92486 0.77135 0.90510 0.90828 0.90561 0.91413 0.89618 0.89885 0.80836 0.91388 0.91731 0.93440 0.96276 0.92087 0.92749 0.95833 0.90890 0.92239 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.13 37.16 0.34 -1.50 16 2 C 0.14 1.77 2.16 -67.93 -0.15 1.62 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 4 N -0.72 -7.47 3.76 -53.80 -0.20 -7.67 16 5 C 0.52 6.14 7.05 -10.99 -0.08 6.07 16 6 O -0.54 -8.35 15.52 5.55 0.09 -8.26 16 7 C -0.03 -0.23 2.90 -92.63 -0.27 -0.50 16 8 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.10 -0.85 4.61 -26.52 -0.12 -0.98 16 10 C -0.11 -0.74 5.86 -26.53 -0.16 -0.89 16 11 C -0.04 -0.31 6.31 -27.57 -0.17 -0.49 16 12 C 0.09 0.95 7.10 -82.35 -0.58 0.36 16 13 N -0.29 -3.33 12.68 33.75 0.43 -2.90 16 14 N -0.48 -4.54 7.37 30.35 0.22 -4.31 16 15 H 0.44 3.08 8.96 -182.44 -1.64 1.45 16 16 C 0.07 0.65 10.90 -17.36 -0.19 0.46 16 17 C -0.24 -2.33 5.42 -104.98 -0.57 -2.89 16 18 C -0.09 -1.16 1.79 -90.58 -0.16 -1.32 16 19 C -0.13 -1.86 5.22 -26.61 -0.14 -2.00 16 20 C 0.15 2.70 6.52 -3.71 -0.02 2.68 16 21 N -0.60 -13.80 2.77 -172.32 -0.48 -14.28 16 22 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 23 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 24 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 25 N -0.91 -27.72 13.97 55.49 0.78 -26.95 16 26 Si 0.88 22.05 24.34 -169.99 -4.14 17.91 16 27 H -0.29 -6.92 6.62 56.52 0.37 -6.55 16 28 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.27 -6.60 6.64 56.52 0.38 -6.23 16 30 C 0.13 2.62 4.20 -3.71 -0.02 2.60 16 31 C -0.13 -2.08 5.04 -26.61 -0.13 -2.22 16 32 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 3.17 6.10 -40.82 -0.25 2.92 16 36 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.17 1.26 4.22 -52.49 -0.22 1.04 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.55 5.61 -51.93 -0.29 0.26 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.02 0.48 7.08 -51.93 -0.37 0.12 16 50 H 0.07 1.70 4.50 -51.93 -0.23 1.46 16 51 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 52 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -34.31 386.78 -9.69 -44.01 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.55 Total: 2.39 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.66 Total: -5.76 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.75 Total: -56.12 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.31 -9.69 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997083249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.115 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds