Wall clock time and date at job start Wed Apr 1 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47360 * 2 1 4 4 N 1.46503 * 109.46990 * 119.99583 * 2 1 3 5 5 C 1.34769 * 120.00013 * 275.00151 * 4 2 1 6 6 O 1.21286 * 119.99993 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00062 * 180.02562 * 5 4 2 8 8 H 1.08995 * 109.74841 * 299.36612 * 7 5 4 9 9 C 1.53384 * 109.71758 * 178.73707 * 7 5 4 10 10 C 1.53032 * 109.72421 * 189.77378 * 9 7 5 11 11 C 1.53365 * 109.75367 * 71.70752 * 10 9 7 12 12 C 1.50947 * 108.20828 * 309.34322 * 11 10 9 13 13 N 1.30124 * 128.29433 * 196.78356 * 12 11 10 14 14 N 1.40305 * 108.13121 * 179.82381 * 13 12 11 15 15 H 0.97003 * 126.00812 * 180.02562 * 14 13 12 16 16 C 1.35204 * 107.99255 * 0.25645 * 14 13 12 17 17 C 1.34576 * 107.61360 * 359.67655 * 16 14 13 18 18 C 1.52999 * 109.47328 * 239.99571 * 2 1 3 19 19 C 1.53039 * 109.46223 * 180.02562 * 18 2 1 20 20 C 1.53191 * 109.31353 * 178.60368 * 19 18 2 21 21 N 1.46925 * 108.76707 * 54.65266 * 20 19 18 22 22 C 1.36940 * 120.62913 * 126.40805 * 21 20 19 23 23 H 1.07994 * 119.99859 * 332.60395 * 22 21 20 24 24 C 1.38808 * 119.99923 * 152.60489 * 22 21 20 25 25 N 1.31621 * 120.00230 * 159.35694 * 24 22 21 26 26 Si 1.86801 * 120.00173 * 339.36394 * 24 22 21 27 27 H 1.48494 * 109.47423 * 92.90567 * 26 24 22 28 28 H 1.48504 * 109.47125 * 212.91021 * 26 24 22 29 29 H 1.48504 * 109.46911 * 332.90901 * 26 24 22 30 30 C 1.46925 * 118.73963 * 306.38554 * 21 20 19 31 31 C 1.53042 * 109.46038 * 59.97275 * 18 2 1 32 32 H 1.08995 * 109.46685 * 60.00808 * 1 2 3 33 33 H 1.09002 * 109.46684 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47150 * 300.00400 * 1 2 3 35 35 H 0.96998 * 119.99566 * 95.00233 * 4 2 1 36 36 H 1.09002 * 109.43198 * 309.84754 * 9 7 5 37 37 H 1.08998 * 109.43340 * 69.74444 * 9 7 5 38 38 H 1.08998 * 109.42027 * 191.79854 * 10 9 7 39 39 H 1.09000 * 109.41891 * 311.62041 * 10 9 7 40 40 H 1.09002 * 109.71612 * 69.01937 * 11 10 9 41 41 H 1.09000 * 109.71421 * 189.62011 * 11 10 9 42 42 H 1.07998 * 126.19357 * 179.78717 * 16 14 13 43 43 H 1.09004 * 109.46149 * 299.99912 * 18 2 1 44 44 H 1.09006 * 109.49666 * 298.56517 * 19 18 2 45 45 H 1.08999 * 109.49682 * 58.66214 * 19 18 2 46 46 H 1.09002 * 109.59673 * 294.86626 * 20 19 18 47 47 H 1.09007 * 109.70079 * 174.50676 * 20 19 18 48 48 H 0.96999 * 120.00477 * 179.97438 * 25 24 22 49 49 H 1.09005 * 109.58517 * 293.82428 * 30 21 20 50 50 H 1.09002 * 109.58636 * 173.39548 * 30 21 20 51 51 H 1.08997 * 109.49698 * 301.33532 * 31 18 2 52 52 H 1.08999 * 109.49538 * 61.43702 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6499 -0.7283 3.5875 8 1 1.9746 -1.5448 3.8433 9 6 2.7334 0.2599 4.7576 10 6 3.4671 -0.3913 5.9322 11 6 4.9597 -0.5195 5.6041 12 6 5.0906 -1.1762 4.2513 13 7 6.1401 -1.7382 3.7259 14 7 5.7893 -2.2149 2.4538 15 1 6.3768 -2.6782 1.8364 16 6 4.4899 -1.9104 2.2374 17 6 4.0334 -1.2730 3.3312 18 6 2.0401 -0.7213 -1.2492 19 6 3.5704 -0.7217 -1.2486 20 6 4.0774 -1.4749 -2.4825 21 7 3.4748 -0.8772 -3.6818 22 6 4.2607 -0.4518 -4.7194 23 1 5.2759 -0.1342 -4.5328 24 6 3.7525 -0.4288 -6.0108 25 7 4.3156 0.3310 -6.9263 26 14 2.2692 -1.4760 -6.4497 27 1 1.0302 -0.6753 -6.2800 28 1 2.3797 -1.9239 -7.8613 29 1 2.2186 -2.6615 -5.5567 30 6 2.0130 -0.7450 -3.7469 31 6 1.5292 -0.0002 -2.4986 32 1 -0.3632 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 2.2490 -1.6317 1.1527 36 1 3.2750 1.1514 4.4413 37 1 1.7269 0.5387 5.0694 38 1 3.3432 0.2244 6.8231 39 1 3.0500 -1.3814 6.1160 40 1 5.4169 0.4697 5.5784 41 1 5.4511 -1.1320 6.3601 42 1 3.9208 -2.1390 1.3484 43 1 1.6767 -1.7490 -1.2489 44 1 3.9345 0.3054 -1.2741 45 1 3.9338 -1.2147 -0.3469 46 1 3.7905 -2.5243 -2.4137 47 1 5.1630 -1.3960 -2.5409 48 1 3.9607 0.3469 -7.8289 49 1 1.5577 -1.7348 -3.7811 50 1 1.7363 -0.1821 -4.6384 51 1 0.4395 0.0204 -2.4869 52 1 1.9128 1.0200 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997083249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:08 Heat of formation + Delta-G solvation = 21.755777 kcal Electronic energy + Delta-G solvation = -31925.679344 eV Core-core repulsion = 27925.494628 eV Total energy + Delta-G solvation = -4000.184717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.63608 -40.95095 -39.63715 -37.42382 -36.68951 -34.61473 -33.72226 -32.70519 -31.99738 -31.50011 -30.36535 -29.59424 -27.17677 -26.03165 -24.50197 -24.23526 -22.98503 -22.54600 -21.64271 -21.54087 -20.77916 -19.74298 -18.85422 -18.65469 -17.93612 -17.34056 -16.88246 -16.37013 -16.09451 -15.93825 -15.65326 -15.35794 -15.26516 -15.13116 -14.88091 -14.71780 -14.43142 -14.28293 -14.19321 -13.86629 -13.69686 -13.58781 -13.44119 -13.26882 -12.92202 -12.72367 -12.57384 -12.41188 -12.20232 -12.16090 -12.01239 -11.99791 -11.70273 -11.64517 -11.50802 -11.41905 -11.27957 -11.18305 -10.79667 -10.63801 -10.37924 -10.01343 -9.43623 -8.91598 -8.16928 -5.48364 0.91063 1.30650 1.41322 1.51032 1.54238 1.80745 1.96751 2.29631 2.42023 3.05640 3.36776 3.45603 3.65715 3.73740 3.80678 3.89130 3.91854 3.98884 4.13015 4.34854 4.36918 4.39293 4.44737 4.49752 4.53450 4.53927 4.58841 4.60043 4.69698 4.71510 4.82565 4.84574 4.91097 5.00406 5.01147 5.05698 5.10515 5.11918 5.17167 5.19074 5.22046 5.26582 5.28348 5.40313 5.49217 5.53867 5.64238 5.66136 5.86781 6.12137 6.39461 6.60447 6.69210 6.93487 7.32423 7.64175 8.03303 9.03370 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.002873 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.007014 B = 9745.091825 C =10845.586710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.057 0.943 4 N -0.711 5.711 5 C 0.522 3.478 6 O -0.579 6.579 7 C -0.018 4.018 8 H 0.130 0.870 9 C -0.099 4.099 10 C -0.105 4.105 11 C -0.044 4.044 12 C 0.080 3.920 13 N -0.321 5.321 14 N -0.476 5.476 15 H 0.451 0.549 16 C 0.073 3.927 17 C -0.248 4.248 18 C -0.076 4.076 19 C -0.116 4.116 20 C 0.143 3.857 21 N -0.621 5.621 22 C -0.249 4.249 23 H 0.044 0.956 24 C -0.040 4.040 25 N -0.962 5.962 26 Si 0.953 3.047 27 H -0.274 1.274 28 H -0.315 1.315 29 H -0.254 1.254 30 C 0.119 3.881 31 C -0.121 4.121 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.409 0.591 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.195 0.805 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.261 0.739 49 H 0.042 0.958 50 H 0.044 0.956 51 H 0.089 0.911 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -8.576 27.484 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.075 0.925 4 N -0.364 5.364 5 C 0.309 3.691 6 O -0.458 6.458 7 C -0.040 4.040 8 H 0.147 0.853 9 C -0.137 4.137 10 C -0.143 4.143 11 C -0.083 4.083 12 C -0.088 4.088 13 N -0.143 5.143 14 N -0.185 5.185 15 H 0.297 0.703 16 C -0.075 4.075 17 C -0.260 4.260 18 C -0.095 4.095 19 C -0.155 4.155 20 C 0.019 3.981 21 N -0.346 5.346 22 C -0.379 4.379 23 H 0.062 0.938 24 C -0.235 4.235 25 N -0.608 5.608 26 Si 0.781 3.219 27 H -0.201 1.201 28 H -0.244 1.244 29 H -0.178 1.178 30 C -0.005 4.005 31 C -0.160 4.160 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.247 0.753 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.211 0.789 43 H 0.115 0.885 44 H 0.053 0.947 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.107 0.893 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.174 -8.021 27.532 29.334 hybrid contribution -0.402 -0.285 -1.914 1.976 sum -6.576 -8.306 25.619 27.723 Atomic orbital electron populations 1.22155 0.94172 1.03157 1.02083 1.20834 0.94637 0.96094 0.83555 0.92512 1.46115 1.66968 1.14291 1.09013 1.21013 0.76093 0.86779 0.85219 1.90689 1.51799 1.17792 1.85548 1.19759 0.92848 0.98859 0.92495 0.85293 1.21395 1.01741 0.96973 0.93617 1.21548 0.92503 1.02409 0.97811 1.20301 0.98734 1.00015 0.89217 1.22770 0.90266 0.97334 0.98452 1.76986 1.23585 1.19398 0.94374 1.46393 1.09838 1.47768 1.14487 0.70264 1.22514 0.86591 0.98375 0.99976 1.19782 0.97288 1.12360 0.96571 1.21252 0.95188 1.00515 0.92528 1.21944 0.95528 1.00023 0.97959 1.21124 0.96496 0.95210 0.85314 1.44477 1.01812 1.71271 1.17046 1.18844 0.96895 1.35622 0.86535 0.93789 1.25976 1.01802 1.00097 0.95598 1.69992 1.45715 1.40811 1.04304 0.85817 0.79710 0.80688 0.75644 1.20065 1.24412 1.17752 1.21427 0.83726 0.97919 0.97463 1.21982 1.00953 0.98811 0.94272 0.91162 0.90497 0.93340 0.75317 0.93178 0.90404 0.88773 0.90137 0.89914 0.88719 0.78886 0.88482 0.94724 0.89787 0.93546 0.93456 0.93046 0.94016 0.93783 0.89316 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.13 71.98 0.66 -2.38 16 2 C 0.15 3.37 2.16 44.99 0.10 3.47 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 4 N -0.71 -12.37 3.76 -442.53 -1.67 -14.04 16 5 C 0.52 11.16 7.05 87.66 0.62 11.78 16 6 O -0.58 -17.64 15.52 -3.05 -0.05 -17.68 16 7 C -0.02 -0.27 2.90 -12.10 -0.04 -0.31 16 8 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 9 C -0.10 -1.54 4.61 30.73 0.14 -1.40 16 10 C -0.10 -1.09 5.86 30.73 0.18 -0.91 16 11 C -0.04 -0.60 6.31 30.05 0.19 -0.41 16 12 C 0.08 1.56 7.10 43.44 0.31 1.86 16 13 N -0.32 -7.09 12.68 -47.13 -0.60 -7.69 16 14 N -0.48 -8.20 7.37 -57.88 -0.43 -8.63 16 15 H 0.45 5.53 8.96 -213.18 -1.91 3.62 16 16 C 0.07 1.13 10.90 83.33 0.91 2.04 16 17 C -0.25 -4.31 5.42 -20.10 -0.11 -4.41 16 18 C -0.08 -1.79 1.79 -10.77 -0.02 -1.81 16 19 C -0.12 -3.12 5.22 30.67 0.16 -2.96 16 20 C 0.14 4.93 6.52 86.36 0.56 5.49 16 21 N -0.62 -27.91 2.77 -699.09 -1.94 -29.84 16 22 C -0.25 -14.09 10.03 84.03 0.84 -13.25 16 23 H 0.04 2.76 8.06 -2.91 -0.02 2.74 16 24 C -0.04 -2.37 5.23 84.86 0.44 -1.92 16 25 N -0.96 -61.10 13.97 21.65 0.30 -60.80 16 26 Si 0.95 45.80 24.34 68.60 1.67 47.47 16 27 H -0.27 -12.41 6.62 99.48 0.66 -11.75 16 28 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 29 H -0.25 -11.29 6.64 99.48 0.66 -10.63 16 30 C 0.12 4.70 4.20 86.36 0.36 5.06 16 31 C -0.12 -3.68 5.04 30.67 0.15 -3.52 16 32 H 0.07 1.36 6.40 -2.39 -0.02 1.35 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.41 4.65 6.10 -92.71 -0.57 4.08 16 36 H 0.05 1.05 7.77 -2.39 -0.02 1.03 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.19 1.98 4.22 -2.91 -0.01 1.97 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.08 1.64 5.61 -2.39 -0.01 1.63 16 46 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.73 7.93 -2.38 -0.02 1.71 16 48 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 49 H 0.04 1.52 7.08 -2.38 -0.02 1.50 16 50 H 0.04 1.99 4.50 -2.39 -0.01 1.98 16 51 H 0.09 2.21 6.36 -2.39 -0.02 2.19 16 52 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -78.88 386.78 1.15 -77.73 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -1.62 Total: 17.07 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.46 Total: -3.59 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -4.32 Total: -121.00 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -78.88 1.15 -77.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997083249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.487 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds