Wall clock time and date at job start Wed Apr 1 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47117 * 2 1 4 4 N 1.46507 * 109.47170 * 120.00185 * 2 1 3 5 5 C 1.34775 * 119.99800 * 274.99988 * 4 2 1 6 6 O 1.21283 * 120.00229 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99835 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.71261 * 60.60308 * 7 5 4 9 9 C 1.53379 * 109.71691 * 181.25144 * 7 5 4 10 10 C 1.53022 * 109.75126 * 170.32487 * 9 7 5 11 11 C 1.53377 * 109.72073 * 288.27928 * 10 9 7 12 12 C 1.50878 * 108.20132 * 50.53714 * 11 10 9 13 13 C 1.34567 * 128.33432 * 163.25385 * 12 11 10 14 14 N 1.35195 * 107.62265 * 180.28803 * 13 12 11 15 15 H 0.97003 * 126.00564 * 179.97438 * 14 13 12 16 16 N 1.40312 * 107.99154 * 359.95604 * 14 13 12 17 17 C 1.30128 * 108.12128 * 359.97001 * 16 14 13 18 18 C 1.52997 * 109.47184 * 240.00104 * 2 1 3 19 19 C 1.53046 * 109.46250 * 180.02562 * 18 2 1 20 20 C 1.53189 * 109.31241 * 178.60303 * 19 18 2 21 21 N 1.46925 * 108.76874 * 54.65405 * 20 19 18 22 22 C 1.36939 * 120.62975 * 126.35972 * 21 20 19 23 23 H 1.07994 * 120.00138 * 331.85278 * 22 21 20 24 24 C 1.38816 * 119.99884 * 151.84766 * 22 21 20 25 25 N 1.31619 * 119.99956 * 343.07076 * 24 22 21 26 26 Si 1.86799 * 120.00090 * 163.06686 * 24 22 21 27 27 H 1.48503 * 109.47074 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46895 * 120.00196 * 26 24 22 29 29 H 1.48494 * 109.47219 * 240.00145 * 26 24 22 30 30 C 1.46918 * 118.73658 * 306.38428 * 21 20 19 31 31 C 1.53042 * 109.46121 * 59.97395 * 18 2 1 32 32 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47042 * 299.99945 * 1 2 3 34 34 H 1.08996 * 109.46949 * 60.00053 * 1 2 3 35 35 H 0.96994 * 120.00003 * 95.28061 * 4 2 1 36 36 H 1.08997 * 109.42011 * 290.41150 * 9 7 5 37 37 H 1.08994 * 109.42167 * 50.23903 * 9 7 5 38 38 H 1.08996 * 109.42876 * 168.19272 * 10 9 7 39 39 H 1.09010 * 109.42676 * 48.35394 * 10 9 7 40 40 H 1.08997 * 109.71939 * 290.85760 * 11 10 9 41 41 H 1.09003 * 109.71716 * 170.21187 * 11 10 9 42 42 H 1.08005 * 126.19108 * 0.31819 * 13 12 11 43 43 H 1.08999 * 109.46558 * 299.99734 * 18 2 1 44 44 H 1.09004 * 109.49641 * 298.56531 * 19 18 2 45 45 H 1.08999 * 109.49953 * 58.66051 * 19 18 2 46 46 H 1.09001 * 109.59897 * 294.86110 * 20 19 18 47 47 H 1.09009 * 109.70096 * 174.50355 * 20 19 18 48 48 H 0.96995 * 120.00048 * 179.97438 * 25 24 22 49 49 H 1.09005 * 109.58758 * 293.81906 * 30 21 20 50 50 H 1.09008 * 109.58503 * 173.39592 * 30 21 20 51 51 H 1.08995 * 109.49655 * 301.33528 * 31 18 2 52 52 H 1.08994 * 109.49700 * 61.43340 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6488 -0.7289 3.5877 8 1 3.6524 -1.1139 3.4064 9 6 2.6732 0.2440 4.7732 10 6 2.9486 -0.5247 6.0674 11 6 1.7164 -1.3546 6.4486 12 6 1.2925 -2.1515 5.2396 13 6 0.4774 -3.2210 5.1888 14 7 0.3901 -3.6080 3.8964 15 1 -0.1291 -4.3545 3.5584 16 7 1.1821 -2.7400 3.1296 17 6 1.7207 -1.8685 3.9319 18 6 2.0400 -0.7212 -1.2492 19 6 3.5705 -0.7216 -1.2487 20 6 4.0773 -1.4747 -2.4826 21 7 3.4747 -0.8769 -3.6819 22 6 4.2607 -0.4505 -4.7190 23 1 5.2717 -0.1209 -4.5304 24 6 3.7580 -0.4422 -6.0130 25 7 2.6785 -1.1366 -6.3040 26 14 4.6136 0.5547 -7.3410 27 1 5.7964 1.2400 -6.7608 28 1 5.0528 -0.3502 -8.4334 29 1 3.6721 1.5662 -7.8845 30 6 2.0130 -0.7447 -3.7469 31 6 1.5292 0.0001 -2.4986 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 2.2529 -1.6308 1.1516 36 1 3.4573 0.9850 4.6178 37 1 1.7095 0.7475 4.8487 38 1 3.1725 0.1808 6.8675 39 1 3.8013 -1.1879 5.9207 40 1 0.9070 -0.6919 6.7546 41 1 1.9672 -2.0313 7.2656 42 1 -0.0180 -3.6858 6.0285 43 1 1.6767 -1.7489 -1.2491 44 1 3.9346 0.3055 -1.2741 45 1 3.9338 -1.2147 -0.3471 46 1 3.7905 -2.5241 -2.4139 47 1 5.1629 -1.3958 -2.5411 48 1 2.3270 -1.1305 -7.2080 49 1 1.5577 -1.7345 -3.7813 50 1 1.7363 -0.1817 -4.6384 51 1 0.4395 0.0207 -2.4868 52 1 1.9127 1.0202 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997087184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:45 Heat of formation + Delta-G solvation = 36.314033 kcal Electronic energy + Delta-G solvation = -31413.013247 eV Core-core repulsion = 27413.459824 eV Total energy + Delta-G solvation = -3999.553423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.86990 -39.82330 -38.00579 -36.50132 -35.17420 -33.12562 -32.39798 -31.09858 -30.74271 -29.65396 -29.22341 -28.66505 -25.46243 -24.99772 -23.13628 -22.04420 -22.01709 -21.77787 -20.43037 -20.27028 -19.21869 -18.88776 -17.90023 -17.06085 -16.55316 -16.00248 -15.81606 -14.99628 -14.78706 -14.67125 -14.44144 -14.06410 -13.81526 -13.63232 -13.51423 -13.35452 -13.24504 -12.94913 -12.91534 -12.71252 -12.30353 -12.26850 -12.08876 -11.74626 -11.70382 -11.24961 -11.15699 -11.05583 -11.01937 -10.93886 -10.72114 -10.68376 -10.35004 -10.16413 -10.07606 -10.00744 -9.84406 -9.55259 -9.44270 -9.30711 -8.77811 -8.72204 -8.42696 -6.61163 -5.74546 -3.16522 1.59122 2.31374 2.48872 2.83432 3.34731 3.39859 3.47716 3.50195 4.12088 4.31282 4.53647 4.61176 4.66187 4.78820 4.97544 5.05050 5.13804 5.16620 5.22658 5.33414 5.41555 5.42488 5.45786 5.48109 5.61879 5.66860 5.76107 5.77219 5.82902 5.84504 5.93380 5.96727 6.06810 6.13691 6.18016 6.27489 6.30373 6.38227 6.40545 6.56419 6.66099 6.68980 6.81997 6.86260 6.92606 6.98013 7.06659 7.34294 7.43299 7.71203 7.71254 7.84254 8.36804 8.50191 9.26473 9.90229 10.47298 11.33902 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.002315 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.846719 B =12092.731319 C =12417.807905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.084 0.916 4 N -0.708 5.708 5 C 0.523 3.477 6 O -0.543 6.543 7 C -0.027 4.027 8 H 0.114 0.886 9 C -0.096 4.096 10 C -0.118 4.118 11 C -0.042 4.042 12 C -0.230 4.230 13 C 0.060 3.940 14 N -0.479 5.479 15 H 0.441 0.559 16 N -0.276 5.276 17 C 0.086 3.914 18 C -0.083 4.083 19 C -0.125 4.125 20 C 0.146 3.854 21 N -0.592 5.592 22 C -0.249 4.249 23 H 0.065 0.935 24 C 0.000 4.000 25 N -0.904 5.904 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.289 1.289 30 C 0.172 3.828 31 C -0.133 4.133 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.176 0.824 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.015 0.985 47 H 0.051 0.949 48 H 0.252 0.748 49 H 0.016 0.984 50 H 0.087 0.913 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -4.196 27.504 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.102 0.898 4 N -0.358 5.358 5 C 0.307 3.693 6 O -0.420 6.420 7 C -0.051 4.051 8 H 0.132 0.868 9 C -0.135 4.135 10 C -0.155 4.155 11 C -0.080 4.080 12 C -0.242 4.242 13 C -0.086 4.086 14 N -0.188 5.188 15 H 0.285 0.715 16 N -0.098 5.098 17 C -0.083 4.083 18 C -0.102 4.102 19 C -0.164 4.164 20 C 0.020 3.980 21 N -0.315 5.315 22 C -0.378 4.378 23 H 0.082 0.918 24 C -0.198 4.198 25 N -0.548 5.548 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.046 3.954 31 C -0.173 4.173 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.193 0.807 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.105 0.895 51 H 0.071 0.929 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.081 -3.771 26.157 26.912 hybrid contribution 0.112 -0.394 -0.134 0.431 sum -4.969 -4.165 26.023 26.818 Atomic orbital electron populations 1.22160 0.95780 1.01782 1.01953 1.21135 0.93626 0.97392 0.83715 0.89776 1.46097 1.66019 1.14313 1.09364 1.20164 0.77813 0.87055 0.84259 1.90689 1.50437 1.15899 1.84981 1.19968 0.98002 0.92169 0.94923 0.86826 1.21396 1.04086 0.96464 0.91528 1.21590 0.97818 0.98855 0.97287 1.20018 0.97571 0.96902 0.93526 1.20070 1.06703 1.01534 0.95852 1.22060 1.00472 0.97614 0.88445 1.46311 1.40117 1.27473 1.04888 0.71520 1.77008 1.10057 1.04177 1.18562 1.21840 0.98454 0.95934 0.92032 1.21313 0.96342 0.99278 0.93254 1.22031 0.94607 1.01279 0.98511 1.20887 0.96468 0.93900 0.86787 1.44059 1.02057 1.69869 1.15538 1.19231 0.97223 1.35786 0.85602 0.91760 1.25039 0.98470 0.99243 0.97040 1.70042 1.24660 1.41043 1.19103 0.86246 0.78962 0.79829 0.81894 1.20277 1.21805 1.21581 1.20764 0.83266 0.96765 0.94585 1.22260 0.98809 1.00057 0.96164 0.92796 0.93026 0.91213 0.76137 0.90296 0.90429 0.90994 0.91594 0.91167 0.91170 0.80668 0.91584 0.92360 0.93432 0.96718 0.93006 0.93768 0.96574 0.89505 0.92879 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.13 37.16 0.34 -1.96 16 2 C 0.15 2.22 2.16 -67.93 -0.15 2.08 16 3 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 4 N -0.71 -9.74 4.04 -53.81 -0.22 -9.96 16 5 C 0.52 7.35 7.11 -10.99 -0.08 7.27 16 6 O -0.54 -9.36 15.52 5.56 0.09 -9.28 16 7 C -0.03 -0.29 2.90 -92.61 -0.27 -0.56 16 8 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 9 C -0.10 -0.90 4.60 -26.52 -0.12 -1.02 16 10 C -0.12 -0.79 5.87 -26.52 -0.16 -0.95 16 11 C -0.04 -0.28 6.28 -27.60 -0.17 -0.45 16 12 C -0.23 -2.01 5.89 -104.99 -0.62 -2.63 16 13 C 0.06 0.42 11.95 -17.37 -0.21 0.21 16 14 N -0.48 -3.86 7.37 30.35 0.22 -3.64 16 15 H 0.44 2.27 8.96 -182.43 -1.64 0.64 16 16 N -0.28 -3.12 11.47 33.75 0.39 -2.73 16 17 C 0.09 0.93 6.38 -82.35 -0.53 0.41 16 18 C -0.08 -1.39 1.79 -90.58 -0.16 -1.55 16 19 C -0.12 -2.21 5.22 -26.61 -0.14 -2.35 16 20 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 21 N -0.59 -15.03 2.99 -172.32 -0.52 -15.55 16 22 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 23 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 24 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 25 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 26 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 31 C -0.13 -2.56 5.04 -26.61 -0.13 -2.69 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 35 H 0.40 5.22 7.48 -40.82 -0.31 4.91 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.85 7.77 -51.93 -0.40 0.44 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.43 8.10 -51.92 -0.42 0.01 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.18 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.73 7.40 -51.93 -0.38 0.34 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.09 7.93 -51.92 -0.41 0.68 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.34 6.06 -51.92 -0.31 2.03 16 51 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -33.73 400.13 -11.06 -44.79 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -9.98 Total: 3.43 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.67 Total: -4.16 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.50 Total: -57.80 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.73 -11.06 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997087184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.101 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds