Wall clock time and date at job start Wed Apr 1 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47117 * 2 1 4 4 N 1.46507 * 109.47170 * 120.00185 * 2 1 3 5 5 C 1.34775 * 119.99800 * 274.99988 * 4 2 1 6 6 O 1.21283 * 120.00229 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99835 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.71261 * 60.60308 * 7 5 4 9 9 C 1.53379 * 109.71691 * 181.25144 * 7 5 4 10 10 C 1.53022 * 109.75126 * 170.32487 * 9 7 5 11 11 C 1.53377 * 109.72073 * 288.27928 * 10 9 7 12 12 C 1.50878 * 108.20132 * 50.53714 * 11 10 9 13 13 C 1.34567 * 128.33432 * 163.25385 * 12 11 10 14 14 N 1.35195 * 107.62265 * 180.28803 * 13 12 11 15 15 H 0.97003 * 126.00564 * 179.97438 * 14 13 12 16 16 N 1.40312 * 107.99154 * 359.95604 * 14 13 12 17 17 C 1.30128 * 108.12128 * 359.97001 * 16 14 13 18 18 C 1.52997 * 109.47184 * 240.00104 * 2 1 3 19 19 C 1.53046 * 109.46250 * 180.02562 * 18 2 1 20 20 C 1.53189 * 109.31241 * 178.60303 * 19 18 2 21 21 N 1.46925 * 108.76874 * 54.65405 * 20 19 18 22 22 C 1.36939 * 120.62975 * 126.35972 * 21 20 19 23 23 H 1.07994 * 120.00138 * 331.85278 * 22 21 20 24 24 C 1.38816 * 119.99884 * 151.84766 * 22 21 20 25 25 N 1.31619 * 119.99956 * 343.07076 * 24 22 21 26 26 Si 1.86799 * 120.00090 * 163.06686 * 24 22 21 27 27 H 1.48503 * 109.47074 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46895 * 120.00196 * 26 24 22 29 29 H 1.48494 * 109.47219 * 240.00145 * 26 24 22 30 30 C 1.46918 * 118.73658 * 306.38428 * 21 20 19 31 31 C 1.53042 * 109.46121 * 59.97395 * 18 2 1 32 32 H 1.09002 * 109.47117 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47042 * 299.99945 * 1 2 3 34 34 H 1.08996 * 109.46949 * 60.00053 * 1 2 3 35 35 H 0.96994 * 120.00003 * 95.28061 * 4 2 1 36 36 H 1.08997 * 109.42011 * 290.41150 * 9 7 5 37 37 H 1.08994 * 109.42167 * 50.23903 * 9 7 5 38 38 H 1.08996 * 109.42876 * 168.19272 * 10 9 7 39 39 H 1.09010 * 109.42676 * 48.35394 * 10 9 7 40 40 H 1.08997 * 109.71939 * 290.85760 * 11 10 9 41 41 H 1.09003 * 109.71716 * 170.21187 * 11 10 9 42 42 H 1.08005 * 126.19108 * 0.31819 * 13 12 11 43 43 H 1.08999 * 109.46558 * 299.99734 * 18 2 1 44 44 H 1.09004 * 109.49641 * 298.56531 * 19 18 2 45 45 H 1.08999 * 109.49953 * 58.66051 * 19 18 2 46 46 H 1.09001 * 109.59897 * 294.86110 * 20 19 18 47 47 H 1.09009 * 109.70096 * 174.50355 * 20 19 18 48 48 H 0.96995 * 120.00048 * 179.97438 * 25 24 22 49 49 H 1.09005 * 109.58758 * 293.81906 * 30 21 20 50 50 H 1.09008 * 109.58503 * 173.39592 * 30 21 20 51 51 H 1.08995 * 109.49655 * 301.33528 * 31 18 2 52 52 H 1.08994 * 109.49700 * 61.43340 * 31 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6488 -0.7289 3.5877 8 1 3.6524 -1.1139 3.4064 9 6 2.6732 0.2440 4.7732 10 6 2.9486 -0.5247 6.0674 11 6 1.7164 -1.3546 6.4486 12 6 1.2925 -2.1515 5.2396 13 6 0.4774 -3.2210 5.1888 14 7 0.3901 -3.6080 3.8964 15 1 -0.1291 -4.3545 3.5584 16 7 1.1821 -2.7400 3.1296 17 6 1.7207 -1.8685 3.9319 18 6 2.0400 -0.7212 -1.2492 19 6 3.5705 -0.7216 -1.2487 20 6 4.0773 -1.4747 -2.4826 21 7 3.4747 -0.8769 -3.6819 22 6 4.2607 -0.4505 -4.7190 23 1 5.2717 -0.1209 -4.5304 24 6 3.7580 -0.4422 -6.0130 25 7 2.6785 -1.1366 -6.3040 26 14 4.6136 0.5547 -7.3410 27 1 5.7964 1.2400 -6.7608 28 1 5.0528 -0.3502 -8.4334 29 1 3.6721 1.5662 -7.8845 30 6 2.0130 -0.7447 -3.7469 31 6 1.5292 0.0001 -2.4986 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 2.2529 -1.6308 1.1516 36 1 3.4573 0.9850 4.6178 37 1 1.7095 0.7475 4.8487 38 1 3.1725 0.1808 6.8675 39 1 3.8013 -1.1879 5.9207 40 1 0.9070 -0.6919 6.7546 41 1 1.9672 -2.0313 7.2656 42 1 -0.0180 -3.6858 6.0285 43 1 1.6767 -1.7489 -1.2491 44 1 3.9346 0.3055 -1.2741 45 1 3.9338 -1.2147 -0.3471 46 1 3.7905 -2.5241 -2.4139 47 1 5.1629 -1.3958 -2.5411 48 1 2.3270 -1.1305 -7.2080 49 1 1.5577 -1.7345 -3.7813 50 1 1.7363 -0.1817 -4.6384 51 1 0.4395 0.0207 -2.4868 52 1 1.9127 1.0202 -2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997087184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:43 Heat of formation + Delta-G solvation = 15.462802 kcal Electronic energy + Delta-G solvation = -31413.917424 eV Core-core repulsion = 27413.459824 eV Total energy + Delta-G solvation = -4000.457601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.52911 -40.96707 -39.49013 -37.34258 -36.63091 -34.55405 -33.56354 -32.55274 -31.41243 -31.39259 -30.53738 -29.51197 -27.18763 -25.89248 -24.58708 -23.68978 -22.87374 -22.66138 -21.65435 -21.38228 -20.66156 -19.76133 -18.77368 -18.46669 -17.87963 -17.20593 -16.78580 -16.65924 -15.85257 -15.60698 -15.58147 -15.32933 -15.09316 -14.91472 -14.84655 -14.64829 -14.37515 -14.29460 -14.03541 -13.73645 -13.52482 -13.44167 -13.38809 -12.95121 -12.89493 -12.74311 -12.64328 -12.43291 -12.34714 -12.16232 -11.99611 -11.81268 -11.77237 -11.61287 -11.51039 -11.45539 -11.23077 -11.08871 -10.82370 -10.54624 -10.30265 -9.99729 -9.30460 -8.67243 -7.87664 -5.32742 0.97664 1.44585 1.46672 1.51585 1.57178 1.79083 2.03979 2.29177 2.50659 3.26375 3.44549 3.60874 3.67529 3.72192 3.89044 3.95681 4.03931 4.08090 4.18395 4.37770 4.42748 4.44456 4.46897 4.53756 4.55500 4.57238 4.66147 4.73042 4.78186 4.85090 4.88044 4.91880 4.97884 5.01449 5.09888 5.10103 5.16437 5.21089 5.27091 5.31123 5.34425 5.36141 5.41738 5.51689 5.53720 5.58950 5.65443 5.69085 5.78539 6.39631 6.49847 6.59368 6.71256 7.15337 7.26998 7.87103 8.38604 9.18654 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.002315 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.846719 B =12092.731319 C =12417.807905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 H 0.066 0.934 4 N -0.702 5.702 5 C 0.520 3.480 6 O -0.579 6.579 7 C -0.023 4.023 8 H 0.129 0.871 9 C -0.093 4.093 10 C -0.113 4.113 11 C -0.039 4.039 12 C -0.251 4.251 13 C 0.073 3.927 14 N -0.475 5.475 15 H 0.451 0.549 16 N -0.314 5.314 17 C 0.069 3.931 18 C -0.071 4.071 19 C -0.112 4.112 20 C 0.142 3.858 21 N -0.611 5.611 22 C -0.261 4.261 23 H 0.063 0.937 24 C -0.051 4.051 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.268 1.268 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.178 3.822 31 C -0.121 4.121 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.217 0.783 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.016 0.984 47 H 0.051 0.949 48 H 0.250 0.750 49 H -0.002 1.002 50 H 0.052 0.948 51 H 0.073 0.927 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -4.955 30.151 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.084 0.916 4 N -0.352 5.352 5 C 0.306 3.694 6 O -0.459 6.459 7 C -0.046 4.046 8 H 0.146 0.854 9 C -0.132 4.132 10 C -0.150 4.150 11 C -0.077 4.077 12 C -0.262 4.262 13 C -0.073 4.073 14 N -0.185 5.185 15 H 0.298 0.702 16 N -0.137 5.137 17 C -0.099 4.099 18 C -0.090 4.090 19 C -0.151 4.151 20 C 0.017 3.983 21 N -0.335 5.335 22 C -0.391 4.391 23 H 0.081 0.919 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.793 3.207 27 H -0.193 1.193 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.053 3.947 31 C -0.160 4.160 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.246 0.754 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.016 0.984 50 H 0.071 0.929 51 H 0.092 0.908 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.963 -4.554 28.830 29.606 hybrid contribution 0.057 -0.229 -0.930 0.959 sum -4.906 -4.783 27.900 28.729 Atomic orbital electron populations 1.22082 0.94943 1.02169 1.01723 1.20841 0.94142 0.96230 0.83647 0.91575 1.46017 1.65806 1.14473 1.08906 1.20782 0.76896 0.86672 0.85009 1.90668 1.52045 1.17600 1.85586 1.19981 0.98686 0.92421 0.93531 0.85355 1.21382 1.02861 0.96394 0.92539 1.21578 0.98252 0.99043 0.96128 1.20066 0.97323 0.97018 0.93337 1.20425 1.07463 1.02584 0.95723 1.22704 0.99163 0.96633 0.88788 1.46382 1.39553 1.27314 1.05288 0.70248 1.76905 1.11502 1.05310 1.19957 1.21902 0.98870 0.95913 0.93202 1.21153 0.95711 0.99311 0.92829 1.21873 0.95050 1.00293 0.97862 1.21036 0.96435 0.94165 0.86662 1.44332 1.02463 1.70479 1.16226 1.19528 0.97504 1.35517 0.86575 0.91889 1.25783 0.99414 1.00388 0.99087 1.70184 1.26129 1.42449 1.19306 0.85238 0.78115 0.78212 0.79086 1.19258 1.21789 1.21637 1.20575 0.82934 0.95740 0.95471 1.22060 1.00010 0.98921 0.95002 0.92038 0.93806 0.90862 0.75370 0.90550 0.92488 0.89386 0.91014 0.91126 0.88989 0.76674 0.91075 0.93482 0.90504 0.96618 0.93089 0.94118 0.98401 0.92944 0.90818 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.13 71.98 0.66 -3.58 16 2 C 0.16 4.66 2.16 44.99 0.10 4.76 16 3 H 0.07 2.26 7.58 -2.39 -0.02 2.25 16 4 N -0.70 -18.67 4.04 -442.53 -1.79 -20.46 16 5 C 0.52 14.40 7.11 87.66 0.62 15.02 16 6 O -0.58 -20.16 15.52 -3.04 -0.05 -20.20 16 7 C -0.02 -0.47 2.90 -12.08 -0.04 -0.51 16 8 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 9 C -0.09 -1.66 4.60 30.73 0.14 -1.52 16 10 C -0.11 -1.27 5.87 30.73 0.18 -1.09 16 11 C -0.04 -0.41 6.28 30.03 0.19 -0.22 16 12 C -0.25 -3.77 5.89 -20.10 -0.12 -3.89 16 13 C 0.07 0.79 11.95 83.33 1.00 1.78 16 14 N -0.48 -6.61 7.37 -57.89 -0.43 -7.03 16 15 H 0.45 3.69 8.96 -213.18 -1.91 1.78 16 16 N -0.31 -6.63 11.47 -47.13 -0.54 -7.17 16 17 C 0.07 1.39 6.38 43.44 0.28 1.67 16 18 C -0.07 -2.32 1.79 -10.77 -0.02 -2.34 16 19 C -0.11 -3.84 5.22 30.67 0.16 -3.68 16 20 C 0.14 6.02 6.52 86.36 0.56 6.58 16 21 N -0.61 -31.51 2.99 -699.09 -2.09 -33.60 16 22 C -0.26 -14.76 9.58 84.03 0.81 -13.96 16 23 H 0.06 3.50 7.88 -2.91 -0.02 3.48 16 24 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 25 N -0.93 -56.26 11.20 21.65 0.24 -56.01 16 26 Si 0.97 45.93 29.59 68.60 2.03 47.96 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 30 C 0.18 8.78 5.30 86.36 0.46 9.24 16 31 C -0.12 -4.62 5.04 30.67 0.15 -4.46 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.98 6.40 -2.39 -0.02 1.97 16 35 H 0.41 10.02 7.48 -92.71 -0.69 9.33 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.24 7.77 -2.39 -0.02 1.22 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.74 8.10 -2.38 -0.02 0.72 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.20 7.40 -2.39 -0.02 2.19 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.05 2.13 7.93 -2.38 -0.02 2.11 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 50 H 0.05 2.93 6.06 -2.38 -0.01 2.92 16 51 H 0.07 2.51 6.36 -2.39 -0.02 2.49 16 52 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -74.77 400.13 1.25 -73.52 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -1.67 Total: 21.72 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 5.55 Total: 1.29 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -4.60 Total: -124.29 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.77 1.25 -73.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997087184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.982 kcal (2) G-P(sol) polarization free energy of solvation -74.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds