Wall clock time and date at job start Wed Apr 1 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46721 * 2 1 4 4 N 1.46500 * 109.47169 * 119.99784 * 2 1 3 5 5 C 1.34778 * 119.99802 * 274.99827 * 4 2 1 6 6 O 1.21622 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.47326 * 119.99795 * 180.02562 * 5 4 2 8 8 C 1.36568 * 126.21057 * 180.02562 * 7 5 4 9 9 N 1.34871 * 106.78910 * 179.97438 * 8 7 5 10 10 C 1.36309 * 107.85989 * 0.07557 * 9 8 7 11 11 N 1.29792 * 108.92385 * 359.66369 * 10 9 8 12 12 C 1.51103 * 123.90294 * 179.86206 * 10 9 8 13 13 C 1.53381 * 108.19480 * 344.07785 * 12 10 9 14 14 C 1.53137 * 109.25318 * 48.94657 * 13 12 10 15 15 C 1.46577 * 127.50545 * 180.13270 * 9 8 7 16 16 C 1.52997 * 109.47226 * 240.00066 * 2 1 3 17 17 C 1.53041 * 109.46066 * 180.02562 * 16 2 1 18 18 C 1.53191 * 109.31394 * 178.61095 * 17 16 2 19 19 N 1.46928 * 108.77168 * 54.63812 * 18 17 16 20 20 C 1.36934 * 120.62844 * 126.41585 * 19 18 17 21 21 H 1.08002 * 120.00226 * 332.60438 * 20 19 18 22 22 C 1.38820 * 120.00306 * 152.60440 * 20 19 18 23 23 N 1.31616 * 120.00019 * 159.35941 * 22 20 19 24 24 Si 1.86803 * 119.99580 * 339.35919 * 22 20 19 25 25 H 1.48505 * 109.46987 * 92.90890 * 24 22 20 26 26 H 1.48492 * 109.46788 * 212.91153 * 24 22 20 27 27 H 1.48496 * 109.47055 * 332.91170 * 24 22 20 28 28 C 1.46926 * 118.74034 * 306.38901 * 19 18 17 29 29 C 1.53043 * 109.46093 * 59.99651 * 16 2 1 30 30 H 1.08994 * 109.47447 * 299.99903 * 1 2 3 31 31 H 1.09000 * 109.47534 * 60.00374 * 1 2 3 32 32 H 1.09006 * 109.46721 * 179.97438 * 1 2 3 33 33 H 0.96994 * 119.99941 * 95.00666 * 4 2 1 34 34 H 1.07997 * 126.60983 * 359.89908 * 8 7 5 35 35 H 1.09002 * 109.71851 * 224.39655 * 12 10 9 36 36 H 1.09004 * 109.75202 * 103.77240 * 12 10 9 37 37 H 1.08999 * 109.50824 * 289.01239 * 13 12 10 38 38 H 1.09005 * 109.50760 * 168.87802 * 13 12 10 39 39 H 1.08992 * 109.46573 * 170.17957 * 14 13 12 40 40 H 1.08996 * 109.46200 * 50.20255 * 14 13 12 41 41 H 1.09002 * 109.58537 * 282.57994 * 15 9 8 42 42 H 1.09000 * 109.58333 * 43.00060 * 15 9 8 43 43 H 1.09000 * 109.46328 * 300.02349 * 16 2 1 44 44 H 1.08995 * 109.50086 * 298.56741 * 17 16 2 45 45 H 1.08999 * 109.49333 * 58.66611 * 17 16 2 46 46 H 1.09003 * 109.59006 * 294.85156 * 18 17 16 47 47 H 1.08996 * 109.58938 * 174.42389 * 18 17 16 48 48 H 0.97003 * 119.99391 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58709 * 293.82468 * 28 19 18 50 50 H 1.08998 * 109.58395 * 173.40109 * 28 19 18 51 51 H 1.08996 * 109.49986 * 301.33493 * 29 16 2 52 52 H 1.09002 * 109.49652 * 61.43559 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8574 1.1618 2.4118 7 6 2.6387 -0.7124 3.5599 8 6 2.8167 -0.1582 4.7953 9 7 3.2778 -1.1381 5.5992 10 6 3.3795 -2.2758 4.8554 11 7 2.9926 -2.0219 3.6427 12 6 3.8654 -3.5986 5.4006 13 6 4.5715 -3.3356 6.7366 14 6 3.6801 -2.4515 7.6134 15 6 3.6187 -1.0393 7.0213 16 6 2.0400 -0.7212 -1.2492 17 6 3.5704 -0.7216 -1.2486 18 6 4.0774 -1.4745 -2.4827 19 7 3.4746 -0.8768 -3.6819 20 6 4.2603 -0.4514 -4.7195 21 1 5.2756 -0.1337 -4.5331 22 6 3.7520 -0.4284 -6.0111 23 7 4.3151 0.3315 -6.9265 24 14 2.2689 -1.4759 -6.4498 25 1 1.0297 -0.6753 -6.2800 26 1 2.3794 -1.9238 -7.8613 27 1 2.2185 -2.6613 -5.5568 28 6 2.0127 -0.7449 -3.7469 29 6 1.5297 0.0004 -2.4986 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1526 34 1 2.6263 0.8676 5.0745 35 1 4.5648 -4.0515 4.6977 36 1 3.0180 -4.2660 5.5576 37 1 5.5193 -2.8293 6.5539 38 1 4.7559 -4.2829 7.2435 39 1 4.0932 -2.4051 8.6209 40 1 2.6757 -2.8731 7.6517 41 1 4.5887 -0.5544 7.1317 42 1 2.8563 -0.4584 7.5403 43 1 1.6763 -1.7487 -1.2493 44 1 3.9346 0.3054 -1.2740 45 1 3.9337 -1.2148 -0.3470 46 1 3.7907 -2.5239 -2.4139 47 1 5.1628 -1.3932 -2.5400 48 1 3.9600 0.3472 -7.8291 49 1 1.5576 -1.7347 -3.7812 50 1 1.7359 -0.1821 -4.6384 51 1 0.4400 0.0214 -2.4871 52 1 1.9136 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997117966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:47 Heat of formation + Delta-G solvation = 30.852409 kcal Electronic energy + Delta-G solvation = -30757.073149 eV Core-core repulsion = 26757.282892 eV Total energy + Delta-G solvation = -3999.790257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.70242 -39.65771 -38.03644 -36.92891 -35.36142 -33.85675 -32.73158 -31.46353 -30.39023 -30.22571 -29.15207 -28.90537 -25.57453 -25.07362 -23.61947 -22.69924 -22.58508 -22.23183 -20.49705 -20.14246 -19.48240 -19.25119 -17.81300 -16.78665 -16.59846 -16.42690 -15.93762 -15.19220 -15.06565 -14.82550 -14.52451 -14.30083 -14.16150 -14.07599 -14.03222 -13.80830 -13.54608 -13.48776 -13.16966 -12.86613 -12.54997 -12.39546 -12.17976 -11.90358 -11.80583 -11.76964 -11.71438 -11.63043 -11.23514 -11.12307 -10.72444 -10.51114 -10.38877 -10.34041 -10.03367 -10.02184 -9.97944 -9.73935 -9.57079 -9.32699 -8.92224 -8.62528 -8.53464 -6.88192 -5.87676 -3.22249 1.41984 2.18003 2.23633 3.34850 3.37812 3.53579 3.55433 3.57291 3.74296 3.93892 4.01674 4.06433 4.47677 4.59924 4.61257 4.72629 4.75719 4.87746 4.99176 5.04562 5.07260 5.09369 5.22717 5.24138 5.26026 5.34194 5.42828 5.50048 5.52819 5.60025 5.72032 5.78982 5.85068 5.95087 6.00114 6.14606 6.19367 6.23447 6.28126 6.33682 6.46127 6.53472 6.64198 6.66774 6.70747 6.77501 6.77908 6.82589 7.09575 7.49133 7.80524 8.05115 8.38579 8.40638 9.02982 9.80366 10.19366 11.28568 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002176 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.153854 B =12865.301799 C =13478.004341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.088 0.912 4 N -0.705 5.705 5 C 0.604 3.396 6 O -0.550 6.550 7 C -0.060 4.060 8 C 0.034 3.966 9 N -0.455 5.455 10 C 0.209 3.791 11 N -0.456 5.456 12 C -0.034 4.034 13 C -0.127 4.127 14 C -0.136 4.136 15 C 0.101 3.899 16 C -0.085 4.085 17 C -0.128 4.128 18 C 0.149 3.851 19 N -0.607 5.607 20 C -0.256 4.256 21 H 0.084 0.916 22 C 0.020 3.980 23 N -0.910 5.910 24 Si 0.884 3.116 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.271 1.271 28 C 0.127 3.873 29 C -0.127 4.127 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.407 0.593 34 H 0.188 0.812 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.061 0.939 48 H 0.261 0.739 49 H 0.024 0.976 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -7.108 33.378 34.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.106 0.894 4 N -0.355 5.355 5 C 0.390 3.610 6 O -0.428 6.428 7 C -0.189 4.189 8 C -0.105 4.105 9 N -0.137 5.137 10 C -0.055 4.055 11 N -0.175 5.175 12 C -0.073 4.073 13 C -0.165 4.165 14 C -0.173 4.173 15 C -0.021 4.021 16 C -0.104 4.104 17 C -0.167 4.167 18 C 0.023 3.977 19 N -0.330 5.330 20 C -0.384 4.384 21 H 0.102 0.898 22 C -0.178 4.178 23 N -0.554 5.554 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.196 1.196 28 C 0.001 3.999 29 C -0.166 4.166 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.205 0.795 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.041 0.959 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.602 -6.745 32.681 33.564 hybrid contribution -0.741 -0.297 0.295 0.851 sum -4.343 -7.042 32.977 33.999 Atomic orbital electron populations 1.22212 0.95598 1.01923 1.02335 1.21129 0.93675 0.97621 0.83466 0.89421 1.45881 1.66067 1.14479 1.09049 1.16861 0.76952 0.85456 0.81773 1.90783 1.51838 1.15193 1.84987 1.20675 1.12373 0.91267 0.94621 1.22428 1.02260 0.95282 0.90540 1.45324 1.48414 1.09551 1.10447 1.23505 1.04599 0.90357 0.87007 1.70388 1.15614 1.13988 1.17527 1.20249 1.01052 0.89526 0.96456 1.21690 0.98833 1.00997 0.94955 1.21908 1.01962 0.93377 1.00082 1.22104 1.02643 0.99724 0.77658 1.21318 0.96657 0.99287 0.93112 1.22034 0.94286 1.01721 0.98630 1.20914 0.97126 0.93817 0.85795 1.44367 1.00988 1.70619 1.17068 1.18935 0.97827 1.36708 0.84949 0.89819 1.25288 0.98003 0.98880 0.95636 1.69847 1.42981 1.38732 1.03809 0.86929 0.82888 0.82268 0.76481 1.21654 1.23304 1.19620 1.21325 0.85108 0.96985 0.96478 1.22090 0.99128 1.00421 0.95010 0.92589 0.91082 0.92688 0.75811 0.79542 0.88311 0.89068 0.90934 0.89709 0.89042 0.90453 0.89304 0.88818 0.91341 0.91952 0.92719 0.96134 0.92055 0.92877 0.95856 0.90984 0.92349 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.13 37.16 0.34 -1.84 16 2 C 0.15 2.15 2.16 -67.93 -0.15 2.01 16 3 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 4 N -0.71 -10.03 4.36 -54.91 -0.24 -10.27 16 5 C 0.60 9.25 7.78 -12.56 -0.10 9.15 16 6 O -0.55 -9.80 16.54 5.26 0.09 -9.71 16 7 C -0.06 -0.81 6.98 -82.97 -0.58 -1.39 16 8 C 0.03 0.36 11.32 -16.82 -0.19 0.17 16 9 N -0.45 -3.72 3.11 -113.42 -0.35 -4.07 16 10 C 0.21 1.99 7.64 -154.63 -1.18 0.81 16 11 N -0.46 -5.76 11.00 -7.00 -0.08 -5.83 16 12 C -0.03 -0.19 6.33 -27.49 -0.17 -0.36 16 13 C -0.13 -0.39 5.95 -26.46 -0.16 -0.54 16 14 C -0.14 -0.32 5.93 -26.53 -0.16 -0.48 16 15 C 0.10 0.38 6.96 -3.87 -0.03 0.36 16 16 C -0.08 -1.35 1.79 -90.58 -0.16 -1.52 16 17 C -0.13 -2.21 5.22 -26.61 -0.14 -2.35 16 18 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 19 N -0.61 -14.83 2.77 -172.32 -0.48 -15.30 16 20 C -0.26 -7.35 10.03 -15.06 -0.15 -7.50 16 21 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 22 C 0.02 0.60 5.23 -17.43 -0.09 0.51 16 23 N -0.91 -28.54 13.97 55.49 0.78 -27.76 16 24 Si 0.88 22.93 24.35 -169.99 -4.14 18.79 16 25 H -0.29 -7.22 6.62 56.52 0.37 -6.84 16 26 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 27 H -0.27 -6.91 6.64 56.52 0.38 -6.54 16 28 C 0.13 2.82 4.20 -3.71 -0.02 2.81 16 29 C -0.13 -2.29 5.04 -26.61 -0.13 -2.42 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.41 5.44 8.10 -40.82 -0.33 5.11 16 34 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 38 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.08 0.22 8.11 -51.93 -0.42 -0.21 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.85 7.41 -51.93 -0.38 0.47 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.02 0.52 7.08 -51.93 -0.37 0.15 16 50 H 0.07 1.76 4.50 -51.93 -0.23 1.53 16 51 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 52 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -35.77 398.38 -10.24 -46.02 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.73 Total: 1.70 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.09 Total: 0.44 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.37 Total: -63.24 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.77 -10.24 -46.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997117966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds