Wall clock time and date at job start Wed Apr 1 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46721 * 2 1 4 4 N 1.46500 * 109.47169 * 119.99784 * 2 1 3 5 5 C 1.34778 * 119.99802 * 274.99827 * 4 2 1 6 6 O 1.21622 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.47326 * 119.99795 * 180.02562 * 5 4 2 8 8 C 1.36568 * 126.21057 * 180.02562 * 7 5 4 9 9 N 1.34871 * 106.78910 * 179.97438 * 8 7 5 10 10 C 1.36309 * 107.85989 * 0.07557 * 9 8 7 11 11 N 1.29792 * 108.92385 * 359.66369 * 10 9 8 12 12 C 1.51103 * 123.90294 * 179.86206 * 10 9 8 13 13 C 1.53381 * 108.19480 * 344.07785 * 12 10 9 14 14 C 1.53137 * 109.25318 * 48.94657 * 13 12 10 15 15 C 1.46577 * 127.50545 * 180.13270 * 9 8 7 16 16 C 1.52997 * 109.47226 * 240.00066 * 2 1 3 17 17 C 1.53041 * 109.46066 * 180.02562 * 16 2 1 18 18 C 1.53191 * 109.31394 * 178.61095 * 17 16 2 19 19 N 1.46928 * 108.77168 * 54.63812 * 18 17 16 20 20 C 1.36934 * 120.62844 * 126.41585 * 19 18 17 21 21 H 1.08002 * 120.00226 * 332.60438 * 20 19 18 22 22 C 1.38820 * 120.00306 * 152.60440 * 20 19 18 23 23 N 1.31616 * 120.00019 * 159.35941 * 22 20 19 24 24 Si 1.86803 * 119.99580 * 339.35919 * 22 20 19 25 25 H 1.48505 * 109.46987 * 92.90890 * 24 22 20 26 26 H 1.48492 * 109.46788 * 212.91153 * 24 22 20 27 27 H 1.48496 * 109.47055 * 332.91170 * 24 22 20 28 28 C 1.46926 * 118.74034 * 306.38901 * 19 18 17 29 29 C 1.53043 * 109.46093 * 59.99651 * 16 2 1 30 30 H 1.08994 * 109.47447 * 299.99903 * 1 2 3 31 31 H 1.09000 * 109.47534 * 60.00374 * 1 2 3 32 32 H 1.09006 * 109.46721 * 179.97438 * 1 2 3 33 33 H 0.96994 * 119.99941 * 95.00666 * 4 2 1 34 34 H 1.07997 * 126.60983 * 359.89908 * 8 7 5 35 35 H 1.09002 * 109.71851 * 224.39655 * 12 10 9 36 36 H 1.09004 * 109.75202 * 103.77240 * 12 10 9 37 37 H 1.08999 * 109.50824 * 289.01239 * 13 12 10 38 38 H 1.09005 * 109.50760 * 168.87802 * 13 12 10 39 39 H 1.08992 * 109.46573 * 170.17957 * 14 13 12 40 40 H 1.08996 * 109.46200 * 50.20255 * 14 13 12 41 41 H 1.09002 * 109.58537 * 282.57994 * 15 9 8 42 42 H 1.09000 * 109.58333 * 43.00060 * 15 9 8 43 43 H 1.09000 * 109.46328 * 300.02349 * 16 2 1 44 44 H 1.08995 * 109.50086 * 298.56741 * 17 16 2 45 45 H 1.08999 * 109.49333 * 58.66611 * 17 16 2 46 46 H 1.09003 * 109.59006 * 294.85156 * 18 17 16 47 47 H 1.08996 * 109.58938 * 174.42389 * 18 17 16 48 48 H 0.97003 * 119.99391 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58709 * 293.82468 * 28 19 18 50 50 H 1.08998 * 109.58395 * 173.40109 * 28 19 18 51 51 H 1.08996 * 109.49986 * 301.33493 * 29 16 2 52 52 H 1.09002 * 109.49652 * 61.43559 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8574 1.1618 2.4118 7 6 2.6387 -0.7124 3.5599 8 6 2.8167 -0.1582 4.7953 9 7 3.2778 -1.1381 5.5992 10 6 3.3795 -2.2758 4.8554 11 7 2.9926 -2.0219 3.6427 12 6 3.8654 -3.5986 5.4006 13 6 4.5715 -3.3356 6.7366 14 6 3.6801 -2.4515 7.6134 15 6 3.6187 -1.0393 7.0213 16 6 2.0400 -0.7212 -1.2492 17 6 3.5704 -0.7216 -1.2486 18 6 4.0774 -1.4745 -2.4827 19 7 3.4746 -0.8768 -3.6819 20 6 4.2603 -0.4514 -4.7195 21 1 5.2756 -0.1337 -4.5331 22 6 3.7520 -0.4284 -6.0111 23 7 4.3151 0.3315 -6.9265 24 14 2.2689 -1.4759 -6.4498 25 1 1.0297 -0.6753 -6.2800 26 1 2.3794 -1.9238 -7.8613 27 1 2.2185 -2.6613 -5.5568 28 6 2.0127 -0.7449 -3.7469 29 6 1.5297 0.0004 -2.4986 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1526 34 1 2.6263 0.8676 5.0745 35 1 4.5648 -4.0515 4.6977 36 1 3.0180 -4.2660 5.5576 37 1 5.5193 -2.8293 6.5539 38 1 4.7559 -4.2829 7.2435 39 1 4.0932 -2.4051 8.6209 40 1 2.6757 -2.8731 7.6517 41 1 4.5887 -0.5544 7.1317 42 1 2.8563 -0.4584 7.5403 43 1 1.6763 -1.7487 -1.2493 44 1 3.9346 0.3054 -1.2740 45 1 3.9337 -1.2148 -0.3470 46 1 3.7907 -2.5239 -2.4139 47 1 5.1628 -1.3932 -2.5400 48 1 3.9600 0.3472 -7.8291 49 1 1.5576 -1.7347 -3.7812 50 1 1.7359 -0.1821 -4.6384 51 1 0.4400 0.0214 -2.4871 52 1 1.9136 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997117966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:46 Heat of formation + Delta-G solvation = 7.557022 kcal Electronic energy + Delta-G solvation = -30758.083313 eV Core-core repulsion = 26757.282892 eV Total energy + Delta-G solvation = -4000.800421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.41031 -40.87602 -39.49452 -37.39965 -36.85548 -34.61295 -34.31395 -33.09002 -31.97466 -31.23080 -30.25250 -29.57741 -27.17673 -25.87339 -24.67264 -24.27027 -23.58486 -23.12275 -21.86908 -21.32435 -20.69721 -19.97340 -18.88319 -18.51253 -17.52446 -17.24018 -17.09322 -16.80180 -16.00411 -15.92119 -15.47636 -15.25487 -15.21658 -15.15179 -15.04053 -14.82883 -14.67294 -14.54367 -14.44182 -14.29227 -14.09035 -13.71483 -13.55301 -13.42787 -12.77697 -12.73547 -12.58380 -12.44672 -12.19586 -12.08473 -12.01690 -11.97908 -11.90504 -11.64949 -11.53074 -11.38189 -11.26397 -11.18107 -11.00585 -10.69558 -10.65040 -10.08096 -9.45439 -8.91357 -8.15433 -5.46816 0.55557 1.31443 1.36838 1.42370 1.52486 1.64946 2.29319 2.43300 2.52280 3.06806 3.16146 3.36896 3.56793 3.63894 3.67713 3.81420 3.88962 3.94722 4.01941 4.10635 4.34108 4.35464 4.37673 4.40656 4.45004 4.47161 4.50039 4.51453 4.58342 4.70361 4.81185 4.86087 4.86624 4.92870 4.97639 4.98615 4.99962 5.08425 5.09982 5.11310 5.15921 5.18295 5.26543 5.31537 5.36592 5.44665 5.49487 5.62371 5.87976 6.06646 6.13385 6.52721 6.87912 6.93740 7.26722 7.64423 8.04945 9.04710 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002176 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.153854 B =12865.301799 C =13478.004341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 H 0.064 0.936 4 N -0.699 5.699 5 C 0.601 3.399 6 O -0.584 6.584 7 C -0.098 4.098 8 C 0.041 3.959 9 N -0.448 5.448 10 C 0.208 3.792 11 N -0.488 5.488 12 C -0.036 4.036 13 C -0.122 4.122 14 C -0.131 4.131 15 C 0.090 3.910 16 C -0.074 4.074 17 C -0.115 4.115 18 C 0.145 3.855 19 N -0.621 5.621 20 C -0.249 4.249 21 H 0.046 0.954 22 C -0.040 4.040 23 N -0.959 5.959 24 Si 0.952 3.048 25 H -0.272 1.272 26 H -0.312 1.312 27 H -0.259 1.259 28 C 0.120 3.880 29 C -0.119 4.119 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.201 0.799 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.261 0.739 49 H 0.039 0.961 50 H 0.049 0.951 51 H 0.090 0.910 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -9.263 36.794 38.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.083 0.917 4 N -0.349 5.349 5 C 0.388 3.612 6 O -0.465 6.465 7 C -0.226 4.226 8 C -0.101 4.101 9 N -0.129 5.129 10 C -0.057 4.057 11 N -0.208 5.208 12 C -0.074 4.074 13 C -0.160 4.160 14 C -0.168 4.168 15 C -0.030 4.030 16 C -0.093 4.093 17 C -0.154 4.154 18 C 0.021 3.979 19 N -0.346 5.346 20 C -0.378 4.378 21 H 0.064 0.936 22 C -0.234 4.234 23 N -0.606 5.606 24 Si 0.780 3.220 25 H -0.199 1.199 26 H -0.241 1.241 27 H -0.183 1.183 28 C -0.005 4.005 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.248 0.752 34 H 0.218 0.782 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.108 0.892 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.183 -8.938 36.165 37.612 hybrid contribution -0.126 0.386 -0.622 0.742 sum -5.309 -8.552 35.543 36.941 Atomic orbital electron populations 1.22154 0.94028 1.02895 1.02335 1.20925 0.94766 0.96208 0.83197 0.91748 1.45798 1.65865 1.14584 1.08653 1.17182 0.76336 0.85143 0.82497 1.90749 1.53551 1.16610 1.85626 1.20541 1.15062 0.92207 0.94834 1.22659 1.01104 0.96180 0.90147 1.45610 1.46939 1.08460 1.11878 1.24243 1.03073 0.91862 0.86475 1.70311 1.17144 1.13774 1.19558 1.20469 1.01588 0.87666 0.97718 1.21703 0.98354 1.02265 0.93701 1.21943 1.01909 0.91943 1.01031 1.22545 1.03855 1.01435 0.75192 1.21213 0.95270 1.00147 0.92693 1.21881 0.95556 1.00106 0.97905 1.21070 0.96551 0.94940 0.85360 1.44502 1.01892 1.71227 1.17004 1.18852 0.96949 1.35571 0.86465 0.93630 1.25962 1.01802 1.00110 0.95541 1.69987 1.45612 1.40725 1.04257 0.85824 0.79842 0.80636 0.75650 1.19863 1.24059 1.18299 1.21424 0.83691 0.97836 0.97514 1.21986 1.01007 0.98965 0.93897 0.93390 0.90299 0.91155 0.75157 0.78235 0.88464 0.88032 0.91282 0.87600 0.86386 0.90646 0.88000 0.87161 0.89433 0.94153 0.90625 0.94195 0.93274 0.92998 0.94328 0.93331 0.89152 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.13 71.98 0.66 -3.20 16 2 C 0.15 4.37 2.16 44.99 0.10 4.47 16 3 H 0.06 2.17 7.58 -2.38 -0.02 2.15 16 4 N -0.70 -19.35 4.36 -445.89 -1.94 -21.29 16 5 C 0.60 18.46 7.78 86.63 0.67 19.14 16 6 O -0.58 -21.19 16.54 -4.10 -0.07 -21.26 16 7 C -0.10 -2.60 6.98 40.52 0.28 -2.32 16 8 C 0.04 0.82 11.32 83.84 0.95 1.77 16 9 N -0.45 -6.51 3.11 -512.74 -1.60 -8.10 16 10 C 0.21 3.66 7.64 138.05 1.05 4.72 16 11 N -0.49 -12.00 11.00 -176.07 -1.94 -13.94 16 12 C -0.04 -0.32 6.33 30.10 0.19 -0.13 16 13 C -0.12 -0.36 5.95 30.77 0.18 -0.18 16 14 C -0.13 -0.15 5.93 30.72 0.18 0.03 16 15 C 0.09 0.42 6.96 86.45 0.60 1.02 16 16 C -0.07 -2.23 1.79 -10.77 -0.02 -2.25 16 17 C -0.12 -3.92 5.22 30.67 0.16 -3.76 16 18 C 0.15 5.86 6.52 86.36 0.56 6.42 16 19 N -0.62 -30.32 2.77 -699.09 -1.94 -32.25 16 20 C -0.25 -14.71 10.03 84.04 0.84 -13.87 16 21 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 22 C -0.04 -2.41 5.23 84.86 0.44 -1.96 16 23 N -0.96 -62.22 13.97 21.65 0.30 -61.91 16 24 Si 0.95 47.69 24.35 68.60 1.67 49.36 16 25 H -0.27 -12.79 6.62 99.48 0.66 -12.13 16 26 H -0.31 -15.84 7.11 99.48 0.71 -15.14 16 27 H -0.26 -12.30 6.64 99.48 0.66 -11.64 16 28 C 0.12 5.15 4.20 86.36 0.36 5.51 16 29 C -0.12 -4.09 5.04 30.67 0.15 -3.93 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.82 6.40 -2.39 -0.02 1.80 16 32 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.41 10.48 8.10 -92.71 -0.75 9.73 16 34 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.07 0.28 8.12 -2.39 -0.02 0.26 16 38 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 39 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.07 0.16 8.11 -2.39 -0.02 0.14 16 41 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 2.26 7.41 -2.39 -0.02 2.24 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 48 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 49 H 0.04 1.56 7.08 -2.39 -0.02 1.55 16 50 H 0.05 2.31 4.50 -2.39 -0.01 2.30 16 51 H 0.09 2.55 6.36 -2.39 -0.02 2.53 16 52 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -81.07 398.38 1.95 -79.13 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.07 Total: 18.79 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 7.38 Total: 11.49 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -7.11 Total: -137.50 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.07 Total: -21.26 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.67 Total: 49.36 kcal Total: -81.07 1.95 -79.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997117966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.684 kcal (2) G-P(sol) polarization free energy of solvation -81.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds