Wall clock time and date at job start Wed Apr 1 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 N 1.46503 * 109.46982 * 120.00048 * 2 1 3 5 5 C 1.34772 * 120.00072 * 274.99701 * 4 2 1 6 6 O 1.21578 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.47707 * 120.00476 * 179.72407 * 5 4 2 8 8 C 1.41633 * 126.50241 * 180.02562 * 7 5 4 9 9 C 1.34701 * 105.34214 * 179.97438 * 8 7 5 10 10 N 1.35516 * 107.70857 * 0.04348 * 9 8 7 11 11 N 1.28421 * 109.71552 * 359.68313 * 10 9 8 12 12 C 1.46994 * 123.90027 * 179.97438 * 10 9 8 13 13 C 1.53146 * 108.88892 * 342.33875 * 12 10 9 14 14 C 1.53155 * 109.60084 * 51.12099 * 13 12 10 15 15 C 1.50790 * 127.54384 * 180.02562 * 9 8 7 16 16 C 1.53007 * 109.47269 * 239.99782 * 2 1 3 17 17 C 1.53034 * 109.46012 * 180.02562 * 16 2 1 18 18 C 1.53192 * 109.31217 * 178.61311 * 17 16 2 19 19 N 1.46931 * 108.77278 * 54.63936 * 18 17 16 20 20 C 1.36931 * 120.63141 * 126.41275 * 19 18 17 21 21 H 1.08002 * 120.00191 * 207.66256 * 20 19 18 22 22 C 1.38813 * 120.00287 * 27.66631 * 20 19 18 23 23 N 1.31619 * 120.00036 * 17.35995 * 22 20 19 24 24 Si 1.86801 * 120.00100 * 197.36985 * 22 20 19 25 25 H 1.48492 * 109.47202 * 59.99441 * 24 22 20 26 26 H 1.48502 * 109.46969 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46833 * 299.99254 * 24 22 20 28 28 C 1.46925 * 118.73565 * 306.38962 * 19 18 17 29 29 C 1.53046 * 109.45604 * 59.99864 * 16 2 1 30 30 H 1.08994 * 109.47079 * 299.99801 * 1 2 3 31 31 H 1.09001 * 109.46893 * 60.00202 * 1 2 3 32 32 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00221 * 95.00323 * 4 2 1 34 34 H 1.08001 * 127.32964 * 359.93856 * 8 7 5 35 35 H 1.09002 * 109.56811 * 222.51425 * 12 10 9 36 36 H 1.09002 * 109.66303 * 102.21840 * 12 10 9 37 37 H 1.08996 * 109.44664 * 291.07954 * 13 12 10 38 38 H 1.08999 * 109.44925 * 171.16041 * 13 12 10 39 39 H 1.09000 * 109.53783 * 170.53762 * 14 13 12 40 40 H 1.08997 * 109.54041 * 50.28155 * 14 13 12 41 41 H 1.09000 * 109.72149 * 284.13955 * 15 9 8 42 42 H 1.09000 * 109.71681 * 44.78089 * 15 9 8 43 43 H 1.08995 * 109.45898 * 300.03045 * 16 2 1 44 44 H 1.08998 * 109.50259 * 298.56860 * 17 16 2 45 45 H 1.09004 * 109.49898 * 58.66900 * 17 16 2 46 46 H 1.08999 * 109.59001 * 294.85123 * 18 17 16 47 47 H 1.09001 * 109.58979 * 174.41994 * 18 17 16 48 48 H 0.96998 * 120.00391 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.58954 * 293.82118 * 28 19 18 50 50 H 1.09005 * 109.58430 * 173.39372 * 28 19 18 51 51 H 1.08995 * 109.49772 * 301.34108 * 29 16 2 52 52 H 1.09004 * 109.49709 * 61.43683 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 6 2.6336 -0.7160 3.5647 8 6 2.8197 -0.1477 4.8486 9 6 3.2720 -1.1539 5.6216 10 7 3.3543 -2.2633 4.8476 11 7 2.9718 -1.9876 3.6532 12 6 3.8110 -3.5721 5.3367 13 6 4.5658 -3.3732 6.6543 14 6 3.7137 -2.5366 7.6133 15 6 3.6327 -1.0979 7.0846 16 6 2.0401 -0.7213 -1.2493 17 6 3.5704 -0.7217 -1.2486 18 6 4.0774 -1.4747 -2.4827 19 7 3.4746 -0.8769 -3.6820 20 6 4.2603 -0.4514 -4.7196 21 1 3.9213 0.3488 -5.3608 22 6 5.4925 -1.0487 -4.9475 23 7 5.7654 -2.2196 -4.4119 24 14 6.7635 -0.1904 -6.0139 25 1 7.1072 1.1237 -5.4138 26 1 7.9856 -1.0296 -6.0999 27 1 6.2083 0.0172 -7.3755 28 6 2.0127 -0.7450 -3.7469 29 6 1.5297 0.0003 -2.4987 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 2.6382 0.8749 5.1447 35 1 4.4748 -4.0256 4.6006 36 1 2.9517 -4.2218 5.5027 37 1 5.5059 -2.8570 6.4597 38 1 4.7718 -4.3441 7.1048 39 1 4.1720 -2.5360 8.6023 40 1 2.7114 -2.9606 7.6749 41 1 4.5969 -0.6045 7.2071 42 1 2.8661 -0.5492 7.6317 43 1 1.6762 -1.7487 -1.2493 44 1 3.9346 0.3053 -1.2740 45 1 3.9338 -1.2149 -0.3470 46 1 3.7907 -2.5240 -2.4139 47 1 5.1628 -1.3933 -2.5401 48 1 6.6265 -2.6368 -4.5708 49 1 1.5576 -1.7349 -3.7811 50 1 1.7359 -0.1821 -4.6384 51 1 0.4401 0.0214 -2.4870 52 1 1.9137 1.0204 -2.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997163503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:08 Heat of formation + Delta-G solvation = 44.435159 kcal Electronic energy + Delta-G solvation = -30784.760317 eV Core-core repulsion = 26785.559052 eV Total energy + Delta-G solvation = -3999.201265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.96219 -39.61699 -37.82635 -36.95412 -35.21498 -33.36872 -32.85293 -31.29522 -30.24162 -30.14051 -28.98306 -28.65503 -25.49995 -25.01074 -23.83734 -22.74208 -22.24310 -21.88328 -20.55234 -20.30918 -19.50740 -18.84263 -17.21011 -16.98163 -16.63183 -16.34749 -15.82455 -15.07920 -14.84599 -14.68729 -14.61183 -14.37599 -14.12447 -13.88755 -13.71680 -13.43969 -13.29669 -13.24182 -13.06788 -12.83688 -12.38246 -12.29370 -12.09407 -11.71073 -11.61979 -11.58499 -11.51733 -11.41632 -11.12979 -10.90646 -10.88120 -10.62844 -10.37389 -10.19467 -10.08254 -9.98156 -9.81398 -9.43302 -9.37920 -9.23051 -9.09770 -8.77472 -8.40392 -6.60579 -5.73154 -3.14573 1.53398 1.98783 2.18194 3.32645 3.42205 3.47490 3.49621 3.52448 3.86163 4.08626 4.15523 4.27390 4.54753 4.56157 4.68762 4.83165 4.93746 5.04510 5.10052 5.16818 5.22237 5.30247 5.32988 5.41050 5.42239 5.46499 5.51625 5.58925 5.60457 5.71693 5.75964 5.84453 5.92058 6.08681 6.18078 6.21032 6.29146 6.37783 6.41813 6.56552 6.57601 6.67830 6.74849 6.78419 6.86961 6.93573 7.06703 7.45397 7.60917 7.72572 7.84841 7.88950 8.37752 8.51263 9.27585 9.91710 10.48523 11.35216 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002380 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.515631 B =11761.070319 C =13039.210586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.087 0.913 4 N -0.705 5.705 5 C 0.604 3.396 6 O -0.539 6.539 7 C -0.013 4.013 8 C -0.176 4.176 9 C 0.009 3.991 10 N -0.281 5.281 11 N -0.257 5.257 12 C 0.120 3.880 13 C -0.137 4.137 14 C -0.127 4.127 15 C -0.052 4.052 16 C -0.084 4.084 17 C -0.134 4.134 18 C 0.172 3.828 19 N -0.593 5.593 20 C -0.250 4.250 21 H 0.064 0.936 22 C 0.000 4.000 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.146 3.854 29 C -0.126 4.126 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.161 0.839 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.053 0.947 51 H 0.055 0.945 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -3.058 26.096 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 N -0.356 5.356 5 C 0.388 3.612 6 O -0.414 6.414 7 C -0.174 4.174 8 C -0.204 4.204 9 C -0.114 4.114 10 N -0.071 5.071 11 N -0.092 5.092 12 C 0.001 3.999 13 C -0.175 4.175 14 C -0.165 4.165 15 C -0.090 4.090 16 C -0.103 4.103 17 C -0.173 4.173 18 C 0.046 3.954 19 N -0.315 5.315 20 C -0.379 4.379 21 H 0.082 0.918 22 C -0.198 4.198 23 N -0.549 5.549 24 Si 0.731 3.269 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.020 3.980 29 C -0.165 4.165 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.179 0.821 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.179 -3.426 25.463 26.425 hybrid contribution 0.809 0.492 -0.119 0.955 sum -5.370 -2.934 25.344 26.072 Atomic orbital electron populations 1.22210 0.95644 1.01896 1.02249 1.21188 0.93557 0.97625 0.83603 0.89523 1.45961 1.66012 1.14406 1.09174 1.16865 0.77224 0.85628 0.81444 1.90774 1.50981 1.15002 1.84648 1.22002 1.08677 0.90591 0.96083 1.21297 1.07122 1.00338 0.91682 1.21258 1.06767 0.87518 0.95853 1.45706 1.46130 1.09791 1.05483 1.73433 1.15739 1.17130 1.02920 1.22144 1.00397 0.80414 0.96990 1.21943 0.99388 1.02471 0.93694 1.21703 1.00844 0.94689 0.99242 1.20349 1.03016 0.97810 0.87829 1.21322 0.97240 0.99014 0.92692 1.22217 0.93628 1.01568 0.99884 1.20760 0.99387 0.92635 0.82594 1.44058 0.99554 1.72024 1.15910 1.19150 0.99192 1.12039 1.07565 0.91792 1.25020 1.00049 0.95345 0.99369 1.70029 1.22722 1.14088 1.48031 0.86384 0.81174 0.78998 0.80327 1.21075 1.21700 1.20912 1.20892 0.86068 0.96391 0.94682 1.22083 0.98717 1.00013 0.95705 0.92662 0.91098 0.92694 0.75968 0.82147 0.87969 0.88941 0.90279 0.88674 0.90060 0.91067 0.89458 0.89085 0.91506 0.92715 0.93457 0.96631 0.89610 0.93697 0.96587 0.92842 0.92658 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.13 37.16 0.34 -1.85 16 2 C 0.14 2.22 2.16 -67.92 -0.15 2.08 16 3 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 4 N -0.71 -10.62 4.36 -54.79 -0.24 -10.86 16 5 C 0.60 9.85 7.79 -12.39 -0.10 9.75 16 6 O -0.54 -10.15 16.59 5.30 0.09 -10.06 16 7 C -0.01 -0.19 7.13 -82.69 -0.59 -0.78 16 8 C -0.18 -2.20 10.75 -39.54 -0.43 -2.63 16 9 C 0.01 0.09 6.57 -82.17 -0.54 -0.45 16 10 N -0.28 -2.95 3.74 -56.71 -0.21 -3.16 16 11 N -0.26 -3.46 11.72 33.46 0.39 -3.06 16 12 C 0.12 0.75 7.17 -3.70 -0.03 0.72 16 13 C -0.14 -0.52 5.91 -26.58 -0.16 -0.68 16 14 C -0.13 -0.48 5.98 -26.40 -0.16 -0.64 16 15 C -0.05 -0.29 6.28 -27.59 -0.17 -0.47 16 16 C -0.08 -1.41 1.79 -90.57 -0.16 -1.57 16 17 C -0.13 -2.64 5.22 -26.61 -0.14 -2.78 16 18 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 19 N -0.59 -15.12 2.99 -172.31 -0.52 -15.64 16 20 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 21 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 22 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 23 N -0.90 -26.68 11.19 55.49 0.62 -26.06 16 24 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 29 C -0.13 -2.19 5.04 -26.61 -0.13 -2.32 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 5.75 8.11 -40.82 -0.33 5.42 16 34 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 38 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.87 7.41 -51.93 -0.38 0.49 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 51 H 0.05 0.82 6.36 -51.93 -0.33 0.49 16 52 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -34.12 404.90 -10.28 -44.40 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.81 Total: 2.81 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.68 Total: -1.59 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.05 Total: -58.79 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.12 -10.28 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997163503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.837 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds