Wall clock time and date at job start Wed Apr 1 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 N 1.46503 * 109.46982 * 120.00048 * 2 1 3 5 5 C 1.34772 * 120.00072 * 274.99701 * 4 2 1 6 6 O 1.21578 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.47707 * 120.00476 * 179.72407 * 5 4 2 8 8 C 1.41633 * 126.50241 * 180.02562 * 7 5 4 9 9 C 1.34701 * 105.34214 * 179.97438 * 8 7 5 10 10 N 1.35516 * 107.70857 * 0.04348 * 9 8 7 11 11 N 1.28421 * 109.71552 * 359.68313 * 10 9 8 12 12 C 1.46994 * 123.90027 * 179.97438 * 10 9 8 13 13 C 1.53146 * 108.88892 * 342.33875 * 12 10 9 14 14 C 1.53155 * 109.60084 * 51.12099 * 13 12 10 15 15 C 1.50790 * 127.54384 * 180.02562 * 9 8 7 16 16 C 1.53007 * 109.47269 * 239.99782 * 2 1 3 17 17 C 1.53034 * 109.46012 * 180.02562 * 16 2 1 18 18 C 1.53192 * 109.31217 * 178.61311 * 17 16 2 19 19 N 1.46931 * 108.77278 * 54.63936 * 18 17 16 20 20 C 1.36931 * 120.63141 * 126.41275 * 19 18 17 21 21 H 1.08002 * 120.00191 * 207.66256 * 20 19 18 22 22 C 1.38813 * 120.00287 * 27.66631 * 20 19 18 23 23 N 1.31619 * 120.00036 * 17.35995 * 22 20 19 24 24 Si 1.86801 * 120.00100 * 197.36985 * 22 20 19 25 25 H 1.48492 * 109.47202 * 59.99441 * 24 22 20 26 26 H 1.48502 * 109.46969 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46833 * 299.99254 * 24 22 20 28 28 C 1.46925 * 118.73565 * 306.38962 * 19 18 17 29 29 C 1.53046 * 109.45604 * 59.99864 * 16 2 1 30 30 H 1.08994 * 109.47079 * 299.99801 * 1 2 3 31 31 H 1.09001 * 109.46893 * 60.00202 * 1 2 3 32 32 H 1.09001 * 109.46809 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00221 * 95.00323 * 4 2 1 34 34 H 1.08001 * 127.32964 * 359.93856 * 8 7 5 35 35 H 1.09002 * 109.56811 * 222.51425 * 12 10 9 36 36 H 1.09002 * 109.66303 * 102.21840 * 12 10 9 37 37 H 1.08996 * 109.44664 * 291.07954 * 13 12 10 38 38 H 1.08999 * 109.44925 * 171.16041 * 13 12 10 39 39 H 1.09000 * 109.53783 * 170.53762 * 14 13 12 40 40 H 1.08997 * 109.54041 * 50.28155 * 14 13 12 41 41 H 1.09000 * 109.72149 * 284.13955 * 15 9 8 42 42 H 1.09000 * 109.71681 * 44.78089 * 15 9 8 43 43 H 1.08995 * 109.45898 * 300.03045 * 16 2 1 44 44 H 1.08998 * 109.50259 * 298.56860 * 17 16 2 45 45 H 1.09004 * 109.49898 * 58.66900 * 17 16 2 46 46 H 1.08999 * 109.59001 * 294.85123 * 18 17 16 47 47 H 1.09001 * 109.58979 * 174.41994 * 18 17 16 48 48 H 0.96998 * 120.00391 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.58954 * 293.82118 * 28 19 18 50 50 H 1.09005 * 109.58430 * 173.39372 * 28 19 18 51 51 H 1.08995 * 109.49772 * 301.34108 * 29 16 2 52 52 H 1.09004 * 109.49709 * 61.43683 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 6 2.6336 -0.7160 3.5647 8 6 2.8197 -0.1477 4.8486 9 6 3.2720 -1.1539 5.6216 10 7 3.3543 -2.2633 4.8476 11 7 2.9718 -1.9876 3.6532 12 6 3.8110 -3.5721 5.3367 13 6 4.5658 -3.3732 6.6543 14 6 3.7137 -2.5366 7.6133 15 6 3.6327 -1.0979 7.0846 16 6 2.0401 -0.7213 -1.2493 17 6 3.5704 -0.7217 -1.2486 18 6 4.0774 -1.4747 -2.4827 19 7 3.4746 -0.8769 -3.6820 20 6 4.2603 -0.4514 -4.7196 21 1 3.9213 0.3488 -5.3608 22 6 5.4925 -1.0487 -4.9475 23 7 5.7654 -2.2196 -4.4119 24 14 6.7635 -0.1904 -6.0139 25 1 7.1072 1.1237 -5.4138 26 1 7.9856 -1.0296 -6.0999 27 1 6.2083 0.0172 -7.3755 28 6 2.0127 -0.7450 -3.7469 29 6 1.5297 0.0003 -2.4987 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 2.6382 0.8749 5.1447 35 1 4.4748 -4.0256 4.6006 36 1 2.9517 -4.2218 5.5027 37 1 5.5059 -2.8570 6.4597 38 1 4.7718 -4.3441 7.1048 39 1 4.1720 -2.5360 8.6023 40 1 2.7114 -2.9606 7.6749 41 1 4.5969 -0.6045 7.2071 42 1 2.8661 -0.5492 7.6317 43 1 1.6762 -1.7487 -1.2493 44 1 3.9346 0.3053 -1.2740 45 1 3.9338 -1.2149 -0.3470 46 1 3.7907 -2.5240 -2.4139 47 1 5.1628 -1.3933 -2.5401 48 1 6.6265 -2.6368 -4.5708 49 1 1.5576 -1.7349 -3.7811 50 1 1.7359 -0.1821 -4.6384 51 1 0.4401 0.0214 -2.4870 52 1 1.9137 1.0204 -2.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997163503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:07 Heat of formation + Delta-G solvation = 23.413485 kcal Electronic energy + Delta-G solvation = -30785.671885 eV Core-core repulsion = 26785.559052 eV Total energy + Delta-G solvation = -4000.112833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.81258 -40.91809 -39.36627 -37.49892 -36.80313 -34.56129 -34.05923 -32.80177 -31.85358 -31.30797 -30.13708 -29.61472 -27.19172 -25.97489 -24.83353 -24.03141 -23.58588 -23.01597 -21.86213 -21.49612 -20.78222 -20.00200 -18.71473 -18.04448 -17.75824 -17.27250 -17.02684 -16.81774 -15.96855 -15.84250 -15.40429 -15.31520 -15.25798 -15.00729 -14.89882 -14.86374 -14.66890 -14.56811 -14.32418 -14.01260 -13.75047 -13.52386 -13.21358 -13.08399 -12.86661 -12.72874 -12.66824 -12.39578 -12.24138 -12.20620 -11.98637 -11.96877 -11.87533 -11.81473 -11.63180 -11.49614 -11.38546 -11.12438 -11.01923 -10.52998 -10.25304 -9.94795 -9.93295 -8.67403 -7.87348 -5.31720 0.50058 1.11255 1.44590 1.47445 1.47809 1.54080 2.16844 2.35545 2.50824 3.24448 3.26367 3.56142 3.66533 3.71214 3.77180 3.78663 3.89234 3.96534 4.04565 4.27636 4.30781 4.40577 4.41423 4.47742 4.50519 4.56143 4.57828 4.68862 4.73787 4.74428 4.81628 4.86066 4.90923 4.98351 5.00694 5.03299 5.04892 5.09998 5.14157 5.21365 5.27884 5.30327 5.32689 5.37579 5.42761 5.48021 5.56332 5.65816 5.76509 5.85920 6.39334 6.44292 6.90328 7.15125 7.15870 7.87763 8.38969 9.18706 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002380 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.515631 B =11761.070319 C =13039.210586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.067 0.933 4 N -0.700 5.700 5 C 0.602 3.398 6 O -0.572 6.572 7 C -0.043 4.043 8 C -0.203 4.203 9 C 0.023 3.977 10 N -0.277 5.277 11 N -0.275 5.275 12 C 0.106 3.894 13 C -0.131 4.131 14 C -0.123 4.123 15 C -0.053 4.053 16 C -0.072 4.072 17 C -0.119 4.119 18 C 0.180 3.820 19 N -0.612 5.612 20 C -0.262 4.262 21 H 0.066 0.934 22 C -0.053 4.053 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.141 3.859 29 C -0.114 4.114 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.057 0.943 46 H -0.001 1.001 47 H 0.048 0.952 48 H 0.249 0.751 49 H 0.019 0.981 50 H 0.055 0.945 51 H 0.093 0.907 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -3.572 28.134 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.085 0.915 4 N -0.350 5.350 5 C 0.388 3.612 6 O -0.450 6.450 7 C -0.202 4.202 8 C -0.231 4.231 9 C -0.101 4.101 10 N -0.067 5.067 11 N -0.112 5.112 12 C -0.012 4.012 13 C -0.169 4.169 14 C -0.161 4.161 15 C -0.091 4.091 16 C -0.091 4.091 17 C -0.158 4.158 18 C 0.054 3.946 19 N -0.336 5.336 20 C -0.392 4.392 21 H 0.083 0.917 22 C -0.248 4.248 23 N -0.581 5.581 24 Si 0.793 3.207 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.015 3.985 29 C -0.154 4.154 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.246 0.754 34 H 0.180 0.820 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.017 0.983 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.037 0.963 50 H 0.073 0.927 51 H 0.111 0.889 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.902 -3.953 27.498 28.625 hybrid contribution 1.032 0.573 -0.703 1.374 sum -5.870 -3.381 26.795 27.638 Atomic orbital electron populations 1.22147 0.93534 1.02903 1.02635 1.21026 0.95048 0.96220 0.82894 0.91451 1.45920 1.65735 1.14513 1.08879 1.17133 0.76637 0.85321 0.82102 1.90737 1.52627 1.16370 1.85293 1.21874 1.10682 0.91493 0.96182 1.21502 1.08720 1.01324 0.91549 1.21846 1.04373 0.86407 0.97495 1.46208 1.44552 1.11280 1.04681 1.73354 1.16482 1.16632 1.04698 1.22625 1.01424 0.78838 0.98300 1.21990 0.98591 1.04018 0.92302 1.21729 1.01178 0.92995 1.00179 1.20582 1.03889 0.99780 0.84880 1.21197 0.94730 0.99773 0.93446 1.21988 0.96022 0.99773 0.97992 1.20534 0.97328 0.92355 0.84336 1.44338 1.01423 1.72092 1.15728 1.19491 0.99919 1.11904 1.07912 0.91663 1.25783 1.01875 0.95997 1.01177 1.70179 1.22821 1.15430 1.49679 0.85372 0.78535 0.77713 0.79055 1.20804 1.21936 1.19859 1.21083 0.83617 0.97019 0.96745 1.21964 1.00889 0.98751 0.93748 0.93325 0.89656 0.91330 0.75411 0.82004 0.87842 0.87365 0.90786 0.85863 0.87642 0.90978 0.88322 0.87812 0.90566 0.94298 0.92411 0.98286 0.93332 0.94185 0.96349 0.92675 0.88874 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.13 71.98 0.66 -3.20 16 2 C 0.15 4.58 2.16 44.99 0.10 4.68 16 3 H 0.07 2.33 7.58 -2.39 -0.02 2.31 16 4 N -0.70 -21.12 4.36 -445.51 -1.94 -23.06 16 5 C 0.60 20.13 7.79 86.75 0.68 20.80 16 6 O -0.57 -22.23 16.59 -3.96 -0.07 -22.30 16 7 C -0.04 -1.30 7.13 42.48 0.30 -0.99 16 8 C -0.20 -5.12 10.75 22.30 0.24 -4.88 16 9 C 0.02 0.44 6.57 41.21 0.27 0.71 16 10 N -0.28 -5.53 3.74 -333.33 -1.25 -6.77 16 11 N -0.28 -7.39 11.72 -48.06 -0.56 -7.95 16 12 C 0.11 1.11 7.17 86.33 0.62 1.73 16 13 C -0.13 -0.59 5.91 30.70 0.18 -0.41 16 14 C -0.12 -0.51 5.98 30.81 0.18 -0.32 16 15 C -0.05 -0.47 6.28 30.04 0.19 -0.28 16 16 C -0.07 -2.37 1.79 -10.76 -0.02 -2.39 16 17 C -0.12 -4.76 5.22 30.67 0.16 -4.60 16 18 C 0.18 9.04 5.31 86.36 0.46 9.50 16 19 N -0.61 -31.71 2.99 -699.07 -2.09 -33.81 16 20 C -0.26 -14.89 9.58 84.03 0.81 -14.08 16 21 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 22 C -0.05 -3.06 4.91 84.86 0.42 -2.65 16 23 N -0.93 -56.78 11.19 21.65 0.24 -56.54 16 24 Si 0.97 46.28 29.59 68.60 2.03 48.31 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 28 C 0.14 5.86 6.52 86.36 0.56 6.42 16 29 C -0.11 -3.80 5.04 30.67 0.15 -3.64 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.89 6.40 -2.39 -0.02 1.87 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 11.56 8.11 -92.71 -0.75 10.81 16 34 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.45 8.11 -2.39 -0.02 0.43 16 38 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.07 0.33 8.12 -2.39 -0.02 0.31 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 2.17 7.41 -2.38 -0.02 2.15 16 46 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 48 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 49 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.05 2.25 7.93 -2.38 -0.02 2.23 16 51 H 0.09 2.44 6.36 -2.39 -0.02 2.42 16 52 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -76.90 404.90 2.48 -74.42 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.16 Total: 21.32 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.96 Total: 6.38 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -5.60 Total: -128.12 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -76.90 2.48 -74.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997163503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.832 kcal (2) G-P(sol) polarization free energy of solvation -76.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds